Experiment set19IT030 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most detrimental genes:

  gene name fitness t score description  
PS417_15695 +2.7 4.2 molybdenum cofactor biosynthesis protein A compare
PS417_15710 +1.6 2.1 nitrate reductase compare
PS417_26875 +1.5 6.9 histidine kinase compare
PS417_04380 +1.5 1.3 ABC transporter permease compare
PS417_20855 +1.4 1.2 hypothetical protein compare
PS417_00455 +1.4 2.1 hypothetical protein compare
PS417_01115 +1.4 2.2 serine acetyltransferase compare
PS417_08435 +1.4 1.8 pilus assembly protein PilZ compare
PS417_25270 +1.3 4.8 NrdR family transcriptional regulator compare
PS417_01965 +1.3 2.7 fimbriae biosynthesis protein compare
PS417_27605 +1.3 6.0 hypothetical protein compare
PS417_27610 +1.3 4.7 hypothetical protein compare
PS417_07470 +1.2 1.7 hypothetical protein compare
PS417_27655 +1.2 2.6 LysR family transcriptional regulator compare
PS417_27815 +1.2 1.1 hypothetical protein compare
PS417_22705 +1.2 3.1 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_23855 +1.2 2.6 ABC transporter substrate-binding protein compare
PS417_21850 +1.1 1.6 LysR family transcriptional regulator compare
PS417_28325 +1.1 2.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_10040 +1.1 1.5 MFS transporter compare
PS417_25225 +1.1 2.0 MFS transporter compare
PS417_19505 +1.1 1.8 2,4-diaminobutyrate 4-aminotransferase compare
PS417_18425 +1.1 1.9 sporulation protein compare
PS417_24355 +1.0 1.9 MFS transporter compare
PS417_23315 +1.0 1.4 transcriptional regulator compare
PS417_19125 +1.0 1.7 LysR family transcriptional regulator compare
PS417_15090 +1.0 0.7 hypothetical protein compare
PS417_19720 +1.0 0.8 DNA-binding protein compare
PS417_27045 +1.0 2.4 ATPase compare
PS417_10910 +1.0 2.6 FAD-dependent oxidoreductase compare
PS417_27710 +0.9 4.2 AsnC family transcriptional regulator compare
PS417_10220 +0.9 2.8 hypothetical protein compare
PS417_15705 +0.9 1.9 nitrate reductase compare
PS417_26220 +0.9 1.8 Rieske (2Fe-2S) protein compare
PS417_15715 +0.9 2.7 nitrate reductase compare
PS417_27445 +0.9 3.6 membrane protein compare
PS417_20185 +0.9 2.4 ketosteroid isomerase compare
PS417_18400 +0.9 3.2 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_01080 +0.9 3.5 acyl-CoA dehydrogenase compare
PS417_21255 +0.9 1.2 hypothetical protein compare
PS417_02045 +0.9 2.3 3-oxoacyl-ACP synthase compare
PS417_26900 +0.9 1.4 L-cystine transporter tcyP compare
PS417_22085 +0.9 2.2 aldehyde dehydrogenase compare
PS417_22630 +0.9 1.6 hypothetical protein compare
PS417_02070 +0.9 0.9 membrane protein compare
PS417_27295 +0.9 3.4 hypothetical protein compare
PS417_18235 +0.9 2.1 nitrile hydratase compare
PS417_16815 +0.8 1.4 acyl-CoA dehydrogenase compare
PS417_05325 +0.8 2.3 fimbrial protein compare
PS417_13575 +0.8 1.6 succinylglutamate desuccinylase compare
PS417_23605 +0.8 2.3 permease DsdX compare
PS417_07140 +0.8 3.0 peptidase M48 compare
PS417_26010 +0.8 1.5 amidophosphoribosyltransferase compare
PS417_18360 +0.8 2.3 hypothetical protein compare
PS417_23135 +0.8 1.3 GTP-binding protein compare
PS417_01645 +0.8 1.6 cupin compare
PS417_23095 +0.8 0.8 exodeoxyribonuclease compare
PS417_02385 +0.8 1.1 esterase compare
PS417_28250 +0.8 4.9 cell wall assembly protein compare
PS417_03380 +0.8 0.6 hypothetical protein compare
PS417_07820 +0.8 1.6 transposase compare
PS417_06500 +0.8 1.2 hypothetical protein compare
PS417_23725 +0.8 2.0 methylmalonate-semialdehyde dehydrogenase compare
PS417_18630 +0.8 2.1 tRNA-dihydrouridine synthase C compare
PS417_20140 +0.8 0.8 nucleoprotein/polynucleotide-associated enzyme compare
PS417_08030 +0.8 2.1 transcriptional regulator compare
PS417_26805 +0.8 0.8 cell division protein FtsE compare
PS417_19910 +0.8 3.2 aromatic amino acid aminotransferase compare
PS417_01715 +0.7 1.0 hypothetical protein compare
PS417_11725 +0.7 1.3 peptidase M19 compare
PS417_19360 +0.7 1.6 hypothetical protein compare
PS417_06845 +0.7 1.1 lipoprotein compare
PS417_03145 +0.7 1.4 acetyl-CoA acetyltransferase compare
PS417_05785 +0.7 1.9 tail protein compare
PS417_16665 +0.7 1.4 hypothetical protein compare
PS417_05790 +0.7 1.5 hypothetical protein compare
PS417_06875 +0.7 2.7 iron dicitrate transport regulator FecR compare
PS417_02915 +0.7 2.4 precorrin-3B C17-methyltransferase compare
PS417_15690 +0.7 2.0 ribonucleoside-triphosphate reductase compare
PS417_24650 +0.7 1.4 membrane protein compare
PS417_13660 +0.7 2.4 AsnC family transcriptional regulator compare
PS417_24265 +0.7 2.5 ABC transporter ATP-binding protein compare
PS417_25905 +0.7 1.2 AsnC family transcriptional regulator compare
PS417_12055 +0.7 2.3 xylitol ABC transporter, substrate-binding component (from data) compare
PS417_05830 +0.7 1.3 hypothetical protein compare
PS417_15875 +0.7 0.8 LuxR family transcriptional regulator compare
PS417_04215 +0.7 3.2 malate transporter compare
PS417_25175 +0.7 1.1 hypothetical protein compare
PS417_18965 +0.7 1.8 dienelactone hydrolase compare
PS417_23150 +0.7 1.4 Cro/Cl family transcriptional regulator compare
PS417_06140 +0.7 2.1 cold-shock protein compare
PS417_20025 +0.7 1.1 alpha-ribazole phosphatase compare
PS417_00535 +0.7 1.1 Holliday junction resolvase compare
PS417_06635 +0.7 0.8 ferredoxin compare
PS417_03045 +0.7 1.3 hypothetical protein compare
PS417_02680 +0.7 1.8 hypothetical protein compare
PS417_14980 +0.7 0.8 universal stress protein UspA compare
PS417_10225 +0.7 2.0 chitinase compare
PS417_15895 +0.7 1.5 iron dicitrate transport regulator FecR compare
PS417_23510 +0.7 1.7 HopJ type III effector protein compare
PS417_25310 +0.7 1.9 hypothetical protein compare
PS417_19010 +0.7 2.6 LysR family transcriptional regulator compare
PS417_15975 +0.7 0.8 glutamate carboxypeptidase compare
PS417_13055 +0.7 1.7 aminotransferase compare
PS417_10205 +0.7 2.2 hypothetical protein compare
PS417_19255 +0.7 2.3 short-chain dehydrogenase compare
PS417_22375 +0.7 0.6 cold-shock protein compare
PS417_26510 +0.7 2.8 5,10-methylenetetrahydrofolate reductase compare
PS417_03000 +0.7 1.5 translation initiation factor Sui1 compare
PS417_14530 +0.7 1.3 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_10710 +0.7 1.8 GNAT family acetyltransferase compare
PS417_16520 +0.7 1.6 cold-shock protein compare
PS417_16000 +0.7 1.3 chemotaxis protein CheY compare
PS417_18495 +0.6 1.0 hypothetical protein compare
PS417_10715 +0.6 1.2 Cro/Cl family transcriptional regulator compare
PS417_23630 +0.6 2.8 NADPH quinone reductase MdaB compare
PS417_05120 +0.6 1.1 RNA polymerase subunit sigma-24 compare
PS417_24235 +0.6 1.1 hypothetical protein compare
PS417_05560 +0.6 1.1 ABC transporter compare
PS417_18040 +0.6 1.0 general secretion pathway protein GspN compare
PS417_25985 +0.6 1.2 dethiobiotin synthetase compare
PS417_01705 +0.6 2.3 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) compare
PS417_01630 +0.6 0.7 hypothetical protein compare
PS417_04500 +0.6 0.9 hypothetical protein compare
PS417_12735 +0.6 1.2 peroxidase compare
PS417_21955 +0.6 1.9 dehydrogenase compare
PS417_01815 +0.6 1.6 peptide ABC transporter ATP-binding protein compare
PS417_02845 +0.6 1.8 ABC transporter permease compare
PS417_26350 +0.6 1.1 peptidase C69 compare
PS417_22800 +0.6 1.9 heme iron utilization protein compare
PS417_27460 +0.6 1.9 hypothetical protein compare
PS417_17430 +0.6 2.0 aldehyde dehydrogenase compare
PS417_06965 +0.6 1.6 cysteine methyltransferase compare
PS417_21695 +0.6 1.6 succinylglutamate-semialdehyde dehydrogenase compare
PS417_11930 +0.6 2.4 hypothetical protein compare
PS417_27490 +0.6 1.5 hypothetical protein compare
PS417_08380 +0.6 2.0 ABC transporter ATP-binding protein compare
PS417_18475 +0.6 2.0 Pyrrolidone-carboxylate peptidase compare
PS417_08740 +0.6 1.5 ribose-phosphate pyrophosphokinase compare
PS417_03455 +0.6 1.1 type III secretion protein compare
PS417_13085 +0.6 1.5 FMN-dependent NADH-azoreductase compare
PS417_10985 +0.6 0.6 NADH:flavin oxidoreductase compare
PS417_23155 +0.6 3.3 pilus assembly protein PilW compare
PS417_15885 +0.6 0.6 GCN5 family acetyltransferase compare
PS417_15650 +0.6 1.0 glutamine amidotransferase compare
PS417_14255 +0.6 1.1 phosphate import ATP-binding protein PstB compare
PS417_27950 +0.6 3.5 hypothetical protein compare
PS417_21360 +0.6 0.7 termination factor Rho compare
PS417_18010 +0.6 2.1 acid phosphatase compare
PS417_11190 +0.6 1.7 oxidoreductase compare
PS417_20840 +0.6 2.3 hypothetical protein compare
PS417_12740 +0.6 1.5 secretion protein HlyD compare
PS417_10930 +0.6 1.8 D-xylose ABC transporter permease compare
PS417_03350 +0.6 1.2 cytochrome C peroxidase compare
PS417_06985 +0.6 1.8 metal ABC transporter ATPase compare
PS417_28040 +0.6 0.9 histidine kinase compare
PS417_19560 +0.6 3.1 amino acid ABC transporter substrate-binding protein compare
PS417_14680 +0.6 2.1 LysR family transcriptional regulator compare
PS417_10175 +0.6 1.5 hypothetical protein compare
PS417_08090 +0.6 0.5 3-oxoacyl-ACP reductase compare
PS417_12985 +0.6 2.0 DNA-binding protein compare
PS417_20035 +0.6 2.3 adenosylcobinamide kinase compare
PS417_17590 +0.6 0.6 ABC transporter substrate-binding protein compare
PS417_07635 +0.6 3.3 transcription-repair coupling factor compare
PS417_21375 +0.6 1.7 ADP-ribosylglycohydrolase compare
PS417_11280 +0.6 1.2 HxcX atypical pseudopilin compare
PS417_01920 +0.6 0.6 ATP-dependent protease subunit HslV compare
PS417_27290 +0.6 0.9 hypothetical protein compare
PS417_05965 +0.6 1.5 chemotaxis protein CheW compare
PS417_14855 +0.6 1.6 gluconolactonase compare
PS417_24495 +0.6 2.6 NAD(FAD)-utilizing dehydrogenase compare
PS417_06710 +0.6 0.5 beta-ketoadipyl CoA thiolase compare
PS417_16175 +0.5 1.7 porin compare
PS417_17160 +0.5 0.8 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_27810 +0.5 2.7 ribonuclease PH compare
PS417_13830 +0.5 1.9 hypothetical protein compare
PS417_06145 +0.5 0.5 hypothetical protein compare
PS417_01545 +0.5 1.3 adenine glycosylase compare
PS417_04735 +0.5 2.4 LysR family transcriptional regulator compare
PS417_10320 +0.5 0.8 hypothetical protein compare
PS417_28405 +0.5 1.0 hypothetical protein compare
PS417_26635 +0.5 1.0 hypothetical protein compare
PS417_08510 +0.5 1.1 LysR family transcriptional regulator compare
PS417_11925 +0.5 1.0 hypothetical protein compare
PS417_21120 +0.5 1.6 phosphoserine phosphatase compare
PS417_04935 +0.5 1.0 hypothetical protein compare
PS417_04010 +0.5 2.4 glycine/betaine ABC transporter ATP-binding protein compare
PS417_07795 +0.5 1.2 hypothetical protein compare
PS417_04300 +0.5 1.0 FagA protein compare
PS417_19535 +0.5 2.2 dihydroneopterin aldolase compare
PS417_02180 +0.5 2.0 proline:sodium symporter PutP compare
PS417_28235 +0.5 2.6 diguanylate cyclase compare
PS417_04675 +0.5 2.6 deoxyribonuclease compare
PS417_07985 +0.5 0.8 AbrB family transcriptional regulator compare
PS417_11140 +0.5 1.9 peptide ABC transporter permease compare
PS417_21100 +0.5 2.2 alpha-L-glutamate ligase compare
PS417_03785 +0.5 0.9 pilus assembly protein PilV compare
PS417_22810 +0.5 0.9 DNA base-flipping protein YbaZ compare
PS417_06955 +0.5 1.4 membrane protein compare
PS417_01090 +0.5 2.5 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment