Experiment set19IT030 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_21; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.6 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.3 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -5.2 -7.2 tryptophan synthase alpha chain compare
PP_4678 -5.0 -16.7 Ketol-acid reductoisomerase compare
PP_3511 -4.9 -9.9 Branched-chain-amino-acid aminotransferase compare
PP_5014 -4.2 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0967 -4.2 -9.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0083 -4.1 -7.2 tryptophan synthase beta chain compare
PP_1986 -4.0 -3.8 3-isopropylmalate dehydratase small subunit compare
PP_5185 -3.9 -6.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -3.9 -6.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -3.8 -13.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -3.7 -10.4 Transaldolase compare
PP_1988 -3.7 -8.2 3-isopropylmalate dehydrogenase compare
PP_0184 -3.6 -7.6 Argininosuccinate lyase compare
PP_1985 -3.5 -3.6 3-isopropylmalate dehydratase large subunit compare
PP_5098 -3.5 -8.3 methionine biosynthesis protein MetW compare
PP_1088 -3.5 -11.3 Argininosuccinate synthase compare
PP_0630 -3.4 -1.8 DNA gyrase inhibitor YacG compare
PP_4696 -3.3 -7.0 Nitrogen regulation protein NR(I) compare
PP_0966 -3.3 -8.9 Histidinol dehydrogenase compare
PP_4679 -3.3 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -3.2 -8.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5128 -3.2 -8.7 Dihydroxy-acid dehydratase compare
PP_0421 -3.2 -5.8 Anthranilate phosphoribosyltransferase compare
PP_5348 -3.2 -8.6 Transcriptional regulator, LysR family compare
PP_0289 -3.2 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4909 -3.1 -8.1 phosphoserine phosphatase compare
PP_5097 -3.0 -9.7 homoserine O-acetyltransferase compare
PP_1912 -3.0 -6.9 Phosphate acyltransferase compare
PP_4902 -3.0 -3.8 Oligoribonuclease compare
PP_1022 -3.0 -6.3 glucose 6-phosphate-1-dehydrogenase compare
PP_1079 -2.8 -6.1 Ornithine carbamoyltransferase compare
PP_5346 -2.8 -6.6 pyruvate carboxylase subunit B compare
PP_2001 -2.8 -8.1 O-succinylhomoserine sulfhydrylase compare
PP_5303 -2.8 -6.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3999 -2.8 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1428 -2.7 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_5015 -2.7 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5347 -2.6 -8.4 pyruvate carboxylase subunit A compare
PP_2371 -2.6 -6.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0417 -2.6 -11.9 Anthranilate synthase component 1 compare
PP_1898 -2.6 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_2402 -2.5 -3.3 putative Sensor histidine kinase compare
PP_5095 -2.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_1025 -2.5 -8.5 2-isopropylmalate synthase compare
PP_1654 -2.4 -3.6 cysteine synthase B compare
PP_2390 -2.4 -9.8 Transcriptional regulator, LysR family compare
PP_0420 -2.4 -8.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -2.3 -4.4 Indole-3-glycerol phosphate synthase compare
PP_5090 -2.2 -2.3 putative cell division protein compare
PP_0232 -2.2 -1.8 ATP-binding taurine transporter subunit compare
PP_4785 -2.1 -7.5 conserved exported protein of unknown function compare
PP_4700 -2.1 -2.4 pantothenate synthetase compare
PP_4890 -2.0 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0965 -2.0 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4199 -1.9 -1.6 putative Lipoprotein compare
PP_4874 -1.9 -1.5 50S ribosomal protein L9 compare
PP_0593 -1.9 -1.3 putative ribosome-binding factor compare
PP_2370 -1.8 -2.7 conserved protein of unknown function compare
PP_4895 -1.8 -2.4 tRNA dimethylallyltransferase compare
PP_0022 -1.8 -1.4 hypothetical protein compare
PP_0122 -1.7 -2.6 conserved exported protein of unknown function compare
PP_0719 -1.7 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4994 -1.7 -4.0 conserved protein of unknown function compare
PP_5155 -1.6 -3.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0362 -1.6 -7.7 Biotin synthase compare
PP_1362 -1.6 -3.5 pyruvate kinase II compare
PP_5289 -1.5 -2.1 Acetylglutamate kinase compare
PP_0366 -1.5 -4.3 dethiobiotin synthetase compare
PP_2378 -1.5 -2.6 Fe/S biogenesis protein NfuA compare
PP_1656 -1.5 -5.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_5216 -1.5 -1.4 exopolyphosphatase compare
PP_0291 -1.5 -2.1 conserved protein of unknown function compare
PP_2327 -1.5 -4.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0364 -1.5 -5.0 pimeloyl-[acp] methyl ester esterase compare
PP_3946 -1.4 -1.8 HTH-type transcriptional repressor NicR compare
PP_2302 -1.4 -4.0 DNA-binding, ATP-dependent protease compare
PP_2328 -1.4 -3.9 Phosphoadenosine phosphosulfate reductase compare
PP_5202 -1.4 -2.8 putative cell division protein compare
PP_0363 -1.4 -8.3 8-amino-7-oxononanoate synthase compare
PP_0365 -1.4 -4.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1096 -1.4 -2.8 putative electron transport complex protein compare
PP_4480 -1.4 -5.6 arginine N-succinyltransferase, subunit alpha compare
PP_1739 -1.4 -2.4 conserved membrane protein of unknown function compare
PP_5217 -1.3 -7.2 Polyphosphate kinase compare
PP_4699 -1.3 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4804 -1.3 -2.3 RlpA-like lipoprotein compare
PP_1764 -1.3 -2.7 Phosphoglycolate phosphatase 2 compare
PP_3603 -1.3 -4.3 Transcriptional regulator, GntR family compare
PP_4121 -1.3 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_2820 -1.3 -2.6 HTH-type transcriptional regulator nfxB compare
PP_4520 -1.2 -3.9 conserved protein of unknown function compare
PP_4129 -1.2 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3417 -1.2 -3.6 D-gluconate transporter compare
PP_2336 -1.2 -3.3 aconitate hydratase 1 compare
PP_0547 -1.2 -4.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2883 -1.2 -1.2 conserved protein of unknown function compare
PP_4964 -1.2 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1198 -1.1 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_t29 -1.1 -1.6 tRNA-Ala compare
PP_1011 -1.1 -5.9 glucokinase compare
PP_2899 -1.1 -1.5 conserved exported protein of unknown function compare
PP_5505 -1.1 -2.9 conserved transmembrane protein of unknown function compare
PP_5168 -1.1 -1.4 sulfate/thiosulfate import ATP-binding protein compare
PP_1231 -1.0 -3.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0789 -1.0 -3.6 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4693 -1.0 -2.5 RNA polymerase-binding transcription factor DksA compare
PP_1655 -1.0 -2.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4797 -1.0 -2.0 conserved protein of unknown function compare
PP_5639 -1.0 -5.1 conserved exported protein of unknown function compare
PP_0406 -1.0 -1.6 Nucleotidyltransferase family protein compare
PP_5058 -1.0 -3.3 Carboxy-terminal-processing protease compare
PP_4984 -1.0 -4.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0138 -1.0 -5.5 conserved membrane protein of unknown function compare
PP_0405 -1.0 -4.4 conserved protein of unknown function compare
PP_1632 -0.9 -1.0 conserved protein of unknown function compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_5104 -0.9 -3.9 thiazole synthase compare
PP_1528 -0.9 -1.5 conserved protein of unknown function compare
PP_1404 -0.9 -2.4 conserved protein of unknown function compare
PP_1304 -0.9 -4.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5007 -0.9 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0025 -0.9 -1.0 hypothetical protein compare
PP_2388 -0.9 -1.7 Transporter, LysE family compare
PP_4340 -0.9 -2.1 response regulator for chemotactic signal transduction compare
PP_3892 -0.9 -1.1 conserved protein of unknown function compare
PP_4214 -0.9 -2.4 pyoverdine biosynthesis related protein compare
PP_0393 -0.8 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2497 -0.8 -1.5 conserved protein of unknown function compare
PP_2137 -0.8 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_1679 -0.8 -2.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4254 -0.8 -1.4 conserved protein of unknown function compare
PP_5227 -0.8 -3.7 diaminopimelate decarboxylase compare
PP_4131 -0.8 -2.7 NADH-quinone oxidoreductase subunit N compare
PP_0434 -0.8 -2.5 Anhydro-N-acetylmuramic acid kinase compare
PP_2530 -0.8 -1.9 conserved protein of unknown function compare
PP_0963 -0.8 -2.2 putative BolA family protein compare
PP_3198 -0.8 -1.7 Ferredoxin, 2Fe-2S compare
PP_1128 -0.8 -1.6 OmpA family protein compare
PP_3328 -0.8 -1.3 putative Ring-cleaving dioxygenase compare
PP_4392 -0.8 -4.0 chemotaxis protein methyltransferase compare
PP_4058 -0.8 -3.7 1,4-alpha-glucan branching enzyme compare
PP_4178 -0.8 -3.5 Dienelactone hydrolase family protein compare
PP_0872 -0.8 -3.4 Peptide chain release factor 3 compare
PP_2441 -0.8 -1.5 conserved protein of unknown function compare
PP_5229 -0.8 -2.5 conserved protein of unknown function compare
PP_5075 -0.8 -5.2 glutamate synthase (NADPH) beta subunit compare
PP_4332 -0.8 -2.8 Chemotaxis protein CheW compare
PP_0905 -0.8 -0.7 conserved exported protein of unknown function compare
PP_2525 -0.8 -3.0 conserved protein of unknown function compare
PP_3672 -0.7 -1.8 conserved protein of unknown function compare
PP_3056 -0.7 -2.9 putative Pyocin R2_PP, tail fiber protein compare
PP_2132 -0.7 -2.5 Universal stress protein compare
PP_2070 -0.7 -1.7 Transcriptional regulator, AraC family compare
PP_5453 -0.7 -1.3 conserved protein of unknown function compare
PP_2214 -0.7 -2.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1153 -0.7 -1.8 putative lipoprotein compare
PP_0035 -0.7 -2.0 putative bactoprenol-linked glycose transferase compare
PP_2060 -0.7 -1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5390 -0.7 -2.5 conserved hypothetical protein compare
PP_0003 -0.7 -1.5 16S RNA methyltransferase compare
PP_5230 -0.7 -1.8 Tyrosine recombinase XerC compare
PP_5393 -0.7 -1.0 putative metal-binding chaperone compare
PP_4942 -0.7 -1.0 conserved protein of unknown function compare
PP_2745 -0.7 -1.4 Universal stress protein family compare
PP_3460 -0.7 -1.7 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_3790 -0.7 -4.1 diaminopimelate epimerase compare
PP_4228 -0.7 -2.4 conserved protein of unknown function compare
PP_4099 -0.7 -6.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1770 -0.7 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2274 -0.7 -1.3 conserved protein of unknown function compare
PP_3102 -0.7 -2.6 conserved protein of unknown function compare
PP_4120 -0.7 -1.7 NADH-quinone oxidoreductase subunit B compare
PP_2013 -0.7 -3.3 conserved protein of unknown function compare
PP_5609 -0.7 -1.6 conserved protein of unknown function compare
PP_3449 -0.7 -1.4 conserved exported protein of unknown function compare
PP_0846 -0.7 -0.6 DnaK-like molecular chaperone specific for IscU compare
PP_0368 -0.7 -4.9 putative Acyl-CoA dehydrogenase compare
PP_2414 -0.7 -1.0 conserved exported protein of unknown function compare
PP_3930 -0.7 -1.5 conserved exported protein of unknown function compare
PP_4743 -0.7 -2.7 conserved protein of unknown function compare
PP_5507 -0.7 -1.9 protein of unknown function compare
PP_5456 -0.7 -0.9 conserved protein of unknown function compare
PP_5659 -0.7 -1.7 protein of unknown function compare
PP_3695 -0.7 -3.9 conserved protein of unknown function compare
PP_4782 -0.6 -1.7 Phosphomethylpyrimidine kinase compare
PP_t49 -0.6 -1.9 tRNA-Met compare
PP_5628 -0.6 -1.8 conserved protein of unknown function compare
PP_1808 -0.6 -1.5 glucose-6-phosphate isomerase compare
PP_2878 -0.6 -1.2 conserved protein of unknown function compare
PP_5295 -0.6 -1.1 conserved protein of unknown function compare
PP_0821 -0.6 -1.2 conserved exported protein of unknown function compare
PP_1736 -0.6 -2.4 conserved protein of unknown function compare
PP_1926 -0.6 -1.6 putative phosphotyrosine-protein phosphatase compare
PP_2500 -0.6 -2.8 conserved protein of unknown function compare
PP_0150 -0.6 -2.0 conserved exported protein of unknown function compare
PP_4124 -0.6 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_5422 -0.6 -2.3 hypothetical protein compare
PP_3105 -0.6 -0.9 conserved membrane protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms