Experiment set19IT029 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_25710 -4.4 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_18310 -3.8 -2.9 hypothetical protein compare
PS417_00185 -3.6 -4.0 tryptophan synthase subunit beta compare
PS417_01605 -3.5 -2.2 phosphoglycerate mutase compare
PS417_00180 -3.0 -3.6 tryptophan synthase subunit alpha compare
PS417_01560 -3.0 -3.9 imidazoleglycerol-phosphate dehydratase compare
PS417_27195 -2.9 -1.9 N-acetylglutamate synthase compare
PS417_19850 -2.8 -9.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_08125 -2.8 -0.9 prephenate dehydratase compare
PS417_23545 -2.8 -3.0 gamma-glutamyl kinase compare
PS417_21575 -2.8 -5.8 chemotaxis protein compare
PS417_01580 -2.7 -2.1 imidazole glycerol phosphate synthase compare
PS417_23805 -2.7 -5.0 acetolactate synthase 3 regulatory subunit compare
PS417_08135 -2.7 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26730 -2.7 -1.2 pyrroline-5-carboxylate reductase compare
PS417_05535 -2.6 -3.0 Fis family transcriptional regulator compare
PS417_19860 -2.6 -15.8 flagellar hook protein FlgL compare
PS417_19885 -2.6 -4.4 flagellar basal body rod protein FlgG compare
PS417_21430 -2.6 -2.7 3-oxoacyl-ACP synthase compare
PS417_19755 -2.5 -2.9 flagellar motor switch protein FliM compare
PS417_23995 -2.5 -1.1 preprotein translocase subunit SecG compare
PS417_08155 -2.4 -2.0 integration host factor subunit beta compare
PS417_19790 -2.4 -5.0 ATP synthase compare
PS417_19690 -2.4 -8.0 histidine kinase compare
PS417_00705 -2.4 -1.7 MarR family transcriptional regulator compare
PS417_12855 -2.4 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01855 -2.4 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_19785 -2.4 -5.0 flagellar biogenesis protein compare
PS417_19880 -2.4 -8.8 flagellar basal body L-ring protein compare
PS417_23810 -2.4 -12.8 acetolactate synthase 3 catalytic subunit compare
PS417_02415 -2.3 -4.1 phosphoserine phosphatase compare
PS417_25720 -2.3 -9.7 anthranilate synthase component II compare
PS417_27865 -2.3 -3.0 LysR family transcriptional regulator compare
PS417_24370 -2.3 -1.3 (2Fe-2S)-binding protein compare
PS417_06680 -2.3 -7.1 nuclease PIN compare
PS417_21585 -2.2 -9.8 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19835 -2.2 -1.9 flagellar biosynthesis protein FliS compare
PS417_19650 -2.2 -4.4 chemotaxis protein CheW compare
PS417_21570 -2.1 -7.5 flagellar basal body rod protein FlgB compare
PS417_02000 -2.1 -9.8 glutamate synthase compare
PS417_23770 -2.1 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_19865 -2.1 -11.9 flagellar hook protein FlgK compare
PS417_19695 -2.1 -7.1 flagellar biosynthesis sigma factor compare
PS417_08090 -2.1 -1.3 3-oxoacyl-ACP reductase compare
PS417_19795 -2.1 -9.6 flagellar assembly protein FliH compare
PS417_04375 -2.1 -2.7 ABC transporter ATP-binding protein compare
PS417_27800 -2.1 -3.2 exodeoxyribonuclease III compare
PS417_19840 -2.1 -8.0 flagellar cap protein FliD compare
PS417_02975 -2.1 -2.7 3-dehydroquinate dehydratase compare
PS417_20985 -2.1 -2.5 porin compare
PS417_02005 -2.1 -8.7 glutamate synthase compare
PS417_19870 -2.0 -7.0 flagellar rod assembly protein FlgJ compare
PS417_27135 -2.0 -1.1 glutamine synthetase compare
PS417_22445 -2.0 -3.8 ATP-dependent DNA helicase RuvB compare
PS417_24745 -2.0 -2.9 gamma-glutamyl phosphate reductase compare
PS417_21565 -2.0 -7.2 flagellar basal body rod protein FlgC compare
PS417_16555 -2.0 -2.3 cupin compare
PS417_07710 -2.0 -5.0 membrane protein compare
PS417_19765 -2.0 -8.6 flagellar hook-length control protein compare
PS417_18560 -1.9 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_19745 -1.9 -8.1 flagellar assembly protein FliO compare
PS417_19805 -1.9 -2.1 flagellar M-ring protein FliF compare
PS417_19740 -1.9 -9.5 flagellar biosynthesis protein flip compare
PS417_19825 -1.9 -11.2 ATPase AAA compare
PS417_19725 -1.9 -4.7 flagellar biosynthesis protein FlhB compare
PS417_19735 -1.9 -8.0 flagellar biosynthesis protein FliQ compare
PS417_04420 -1.9 -7.0 histidinol dehydrogenase compare
PS417_27795 -1.9 -1.0 orotate phosphoribosyltransferase compare
PS417_21595 -1.8 -3.1 flagellar biosynthesis protein FlgN compare
PS417_21555 -1.8 -9.0 flagellar hook protein FlgE compare
PS417_21480 -1.8 -1.1 23S rRNA pseudouridylate synthase compare
PS417_19710 -1.8 -9.3 flagellar biosynthesis protein FlhA compare
PS417_04365 -1.8 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01565 -1.8 -4.1 imidazole glycerol phosphate synthase compare
PS417_22565 -1.7 -1.1 formyltetrahydrofolate deformylase compare
PS417_22570 -1.7 -1.1 H-NS histone compare
PS417_24155 -1.7 -1.7 ATP-binding protein compare
PS417_04585 -1.7 -2.0 hypothetical protein compare
PS417_25725 -1.7 -8.8 anthranilate synthase component I compare
PS417_08540 -1.7 -2.7 RNA helicase compare
PS417_04415 -1.7 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26985 -1.7 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19730 -1.7 -2.7 flagellar biosynthesis protein FliR compare
PS417_02510 -1.7 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_24500 -1.6 -3.5 DEAD/DEAH box helicase compare
PS417_04380 -1.6 -1.1 ABC transporter permease compare
PS417_15885 -1.6 -2.0 GCN5 family acetyltransferase compare
PS417_22690 -1.5 -2.3 phosphogluconate dehydratase compare
PS417_02280 -1.5 -2.0 GlcNAc-PI de-N-acetylase compare
PS417_06375 -1.5 -0.8 deoxycytidine triphosphate deaminase compare
PS417_01635 -1.5 -4.4 nitrogen regulation protein NR(I) compare
PS417_16510 -1.5 -2.7 Clp protease ClpX compare
PS417_21630 -1.5 -2.0 magnesium transporter compare
PS417_27305 -1.5 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_03560 -1.5 -1.9 GTP-binding protein compare
PS417_21560 -1.5 -4.2 flagellar basal body rod modification protein FlgD compare
PS417_03465 -1.4 -1.6 type III secretion protein compare
PS417_01575 -1.4 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19660 -1.4 -4.2 cobalamin biosynthesis protein CobQ compare
PS417_02555 -1.4 -8.4 exoribonuclease R compare
PS417_18585 -1.4 -5.2 3-isopropylmalate dehydrogenase compare
PS417_01570 -1.4 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_03300 -1.4 -3.1 alanine acetyltransferase compare
PS417_28070 -1.4 -5.6 phosphate ABC transporter ATP-binding protein compare
PS417_27040 -1.4 -2.3 3-phosphoglycerate dehydrogenase compare
PS417_26990 -1.4 -0.7 RNA pyrophosphohydrolase compare
PS417_23025 -1.3 -4.8 murein transglycosylase compare
PS417_19675 -1.3 -3.6 chemotaxis protein CheY compare
PS417_10675 -1.3 -1.2 TetR family transcriptional regulator compare
PS417_26815 -1.3 -2.4 peptidase M16 compare
PS417_28080 -1.3 -8.7 phosphate ABC transporter permease compare
PS417_19350 -1.3 -4.2 GTP cyclohydrolase compare
PS417_26890 -1.3 -4.0 dihydroxy-acid dehydratase compare
PS417_22350 -1.3 -2.3 Fis family transcriptional regulator compare
PS417_06205 -1.3 -6.3 methionine aminopeptidase compare
PS417_04595 -1.2 -2.1 cell division protein MraZ compare
PS417_15105 -1.2 -3.8 membrane protein compare
PS417_19705 -1.2 -2.7 flagellar biosynthesis regulator FlhF compare
PS417_01640 -1.2 -4.2 histidine kinase compare
PS417_26745 -1.2 -3.7 methionine biosynthesis protein MetW compare
PS417_12310 -1.2 -4.2 methionine synthase compare
PS417_15085 -1.2 -4.0 ATPase AAA compare
PS417_23950 -1.2 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_25380 -1.2 -3.3 hypothetical protein compare
PS417_08685 -1.2 -1.7 flagellar hook-length control protein FliK compare
PS417_08220 -1.2 -0.8 epimerase compare
PS417_23475 -1.2 -1.5 hypothetical protein compare
PS417_02560 -1.2 -1.5 23S rRNA methyltransferase compare
PS417_06200 -1.2 -4.5 protein-PII uridylyltransferase compare
PS417_04390 -1.2 -4.0 toluene tolerance protein compare
PS417_24705 -1.2 -2.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_27875 -1.2 -5.4 histidine kinase compare
PS417_22210 -1.2 -1.2 AraC family transcriptional regulator compare
PS417_04410 -1.1 -1.7 hypothetical protein compare
PS417_18595 -1.1 -4.0 3-isopropylmalate dehydratase compare
PS417_01920 -1.1 -1.0 ATP-dependent protease subunit HslV compare
PS417_23800 -1.1 -5.6 ketol-acid reductoisomerase compare
PS417_21760 -1.1 -1.5 hypothetical protein compare
PS417_05815 -1.1 -3.3 recombinase RecA compare
PS417_07455 -1.1 -2.0 glutamine amidotransferase compare
PS417_02485 -1.1 -3.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_26370 -1.1 -2.9 RNA helicase compare
PS417_27425 -1.1 -3.6 exopolyphosphatase compare
PS417_15820 -1.1 -1.7 universal stress protein UspA compare
PS417_15495 -1.1 -1.4 FAD-dependent oxidoreductase compare
PS417_22360 -1.0 -3.7 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) compare
PS417_20125 -1.0 -3.0 phosphoribosylglycinamide formyltransferase compare
PS417_12290 -1.0 -4.0 sulfite reductase compare
PS417_18000 -1.0 -2.1 hypothetical protein compare
PS417_01915 -1.0 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01850 -1.0 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18420 -1.0 -2.5 deoxyribonuclease compare
PS417_27835 -1.0 -3.3 endoribonuclease compare
PS417_02575 -1.0 -3.0 membrane protein compare
PS417_22370 -1.0 -3.8 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
PS417_26740 -1.0 -3.7 homoserine acetyltransferase compare
PS417_28145 -1.0 -2.7 AraC family transcriptional regulator compare
PS417_05595 -1.0 -5.1 ornithine carbamoyltransferase compare
PS417_01620 -1.0 -1.7 preprotein translocase subunit SecB compare
PS417_12805 -1.0 -5.8 glycogen branching protein compare
PS417_06530 -0.9 -2.2 membrane protein compare
PS417_01590 -0.9 -1.3 polysaccharide deacetylase compare
PS417_18755 -0.9 -1.3 CrtK compare
PS417_09725 -0.9 -4.2 transporter compare
PS417_19605 -0.9 -0.8 hypothetical protein compare
PS417_22355 -0.9 -4.1 glycine cleavage system protein H compare
PS417_04225 -0.9 -1.8 conjugal transfer protein TraR compare
PS417_18530 -0.9 -3.9 O-succinylhomoserine sulfhydrylase compare
PS417_15875 -0.9 -1.5 LuxR family transcriptional regulator compare
PS417_23110 -0.9 -4.7 2-isopropylmalate synthase compare
PS417_18775 -0.9 -2.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_13510 -0.9 -0.8 polyketide cyclase compare
PS417_15095 -0.9 -2.5 hypothetical protein compare
PS417_25715 -0.9 -2.1 anthranilate phosphoribosyltransferase compare
PS417_02705 -0.9 -1.9 urease accessory protein UreF compare
PS417_24630 -0.9 -1.7 ATP-binding protein compare
PS417_16715 -0.9 -1.3 DoxX family protein compare
PS417_28220 -0.9 -1.5 LysR family transcriptional regulator compare
PS417_10305 -0.9 -1.6 hypothetical protein compare
PS417_02160 -0.9 -1.0 hypothetical protein compare
PS417_03100 -0.9 -0.9 pilus assembly protein compare
PS417_18600 -0.8 -1.2 isopropylmalate isomerase compare
PS417_20040 -0.8 -3.2 cobyric acid synthase compare
PS417_16195 -0.8 -0.9 AraC family transcriptional regulator compare
PS417_19655 -0.8 -1.5 chemotaxis protein CheW compare
PS417_03260 -0.8 -1.1 5S ribosomal RNA compare
PS417_17610 -0.8 -1.4 AsnC family transcriptional regulator compare
PS417_27870 -0.8 -1.8 ATP-dependent DNA helicase RecG compare
PS417_15975 -0.8 -1.1 glutamate carboxypeptidase compare
PS417_13165 -0.8 -1.2 peroxidase compare
PS417_05635 -0.8 -4.3 membrane protein compare
PS417_23900 -0.8 -3.5 poly(A) polymerase compare
PS417_17125 -0.8 -2.2 transcriptional regulator compare
PS417_18250 -0.8 -1.2 chemotaxis protein compare
PS417_26175 -0.8 -0.8 sarcosine oxidase subunit gamma compare
PS417_17450 -0.8 -3.0 amino acid ABC transporter substrate-binding protein compare
PS417_04440 -0.8 -1.7 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_22630 -0.8 -2.0 hypothetical protein compare
PS417_04650 -0.8 -0.6 D-alanine--D-alanine ligase compare
PS417_27615 -0.8 -3.1 ammonia channel protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments