Experiment set19IT028 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_21; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0290 -6.2 -7.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -4.7 -9.0 tryptophan synthase beta chain compare
PP_2370 -4.4 -5.0 conserved protein of unknown function compare
PP_4678 -4.4 -14.3 Ketol-acid reductoisomerase compare
PP_4696 -4.3 -6.6 Nitrogen regulation protein NR(I) compare
PP_0082 -4.3 -9.0 tryptophan synthase alpha chain compare
PP_0292 -4.2 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2168 -4.2 -11.5 Transaldolase compare
PP_0289 -4.0 -8.0 Imidazoleglycerol-phosphate dehydratase compare
PP_1985 -3.9 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_0967 -3.9 -9.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -3.8 -13.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -3.5 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -3.5 -6.7 Branched-chain-amino-acid aminotransferase compare
PP_4679 -3.4 -5.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5347 -3.3 -10.7 pyruvate carboxylase subunit A compare
PP_0184 -3.3 -8.9 Argininosuccinate lyase compare
PP_4909 -3.1 -8.2 phosphoserine phosphatase compare
PP_1995 -3.0 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5289 -3.0 -4.6 Acetylglutamate kinase compare
PP_5098 -2.9 -6.2 methionine biosynthesis protein MetW compare
PP_5128 -2.9 -6.6 Dihydroxy-acid dehydratase compare
PP_0420 -2.9 -9.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -2.9 -13.7 Anthranilate synthase component 1 compare
PP_1079 -2.9 -6.3 Ornithine carbamoyltransferase compare
PP_1988 -2.8 -6.7 3-isopropylmalate dehydrogenase compare
PP_0965 -2.8 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -2.8 -9.5 homoserine O-acetyltransferase compare
PP_1025 -2.8 -9.4 2-isopropylmalate synthase compare
PP_3999 -2.8 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5303 -2.7 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5095 -2.7 -1.8 pyrroline-5-carboxylate reductase compare
PP_4994 -2.6 -4.9 conserved protein of unknown function compare
PP_1986 -2.6 -2.5 3-isopropylmalate dehydratase small subunit compare
PP_5346 -2.5 -5.4 pyruvate carboxylase subunit B compare
PP_0421 -2.5 -5.7 Anthranilate phosphoribosyltransferase compare
PP_2001 -2.4 -7.2 O-succinylhomoserine sulfhydrylase compare
PP_1088 -2.4 -6.9 Argininosuccinate synthase compare
PP_2999 -2.4 -2.1 Glyoxalase family protein compare
PP_0422 -2.4 -3.2 Indole-3-glycerol phosphate synthase compare
PP_4785 -2.3 -8.8 conserved exported protein of unknown function compare
PP_5155 -2.3 -3.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5014 -2.3 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_5185 -2.2 -4.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0966 -2.2 -6.1 Histidinol dehydrogenase compare
PP_4890 -2.2 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_2371 -2.2 -5.4 Sulphite reductase hemoprotein, beta subunit compare
PP_2328 -2.0 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_0787 -1.9 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5350 -1.9 -4.0 Transcriptional regulator, RpiR family compare
PP_1237 -1.8 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4804 -1.8 -3.8 RlpA-like lipoprotein compare
PP_1022 -1.8 -5.1 glucose 6-phosphate-1-dehydrogenase compare
PP_1366 -1.8 -1.5 Transcriptional regulator MvaT, P16 subunit compare
PP_3808 -1.7 -2.6 Antibiotic synthesis protein MbtH compare
PP_4700 -1.7 -2.7 pantothenate synthetase compare
PP_4984 -1.7 -7.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5348 -1.7 -4.8 Transcriptional regulator, LysR family compare
PP_2378 -1.7 -3.0 Fe/S biogenesis protein NfuA compare
PP_2388 -1.7 -4.5 Transporter, LysE family compare
PP_0366 -1.7 -4.8 dethiobiotin synthetase compare
PP_5445 -1.7 -2.1 conserved protein of unknown function compare
PP_3105 -1.7 -2.0 conserved membrane protein of unknown function compare
PP_1783 -1.6 -2.1 dTDP-glucose pyrophosphorylase compare
PP_2390 -1.6 -6.2 Transcriptional regulator, LysR family compare
PP_0547 -1.6 -5.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0719 -1.6 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4480 -1.6 -6.6 arginine N-succinyltransferase, subunit alpha compare
PP_5015 -1.5 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1994 -1.5 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_2302 -1.5 -4.1 DNA-binding, ATP-dependent protease compare
PP_1215 -1.5 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_1528 -1.5 -2.1 conserved protein of unknown function compare
PP_2899 -1.4 -1.3 conserved exported protein of unknown function compare
PP_2327 -1.4 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5453 -1.4 -1.8 conserved protein of unknown function compare
PP_0362 -1.4 -7.0 Biotin synthase compare
PP_0363 -1.4 -7.1 8-amino-7-oxononanoate synthase compare
PP_1656 -1.4 -5.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1898 -1.4 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_4693 -1.3 -3.8 RNA polymerase-binding transcription factor DksA compare
PP_1654 -1.3 -3.2 cysteine synthase B compare
PP_4964 -1.3 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1655 -1.2 -2.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1912 -1.2 -3.0 Phosphate acyltransferase compare
PP_5528 -1.2 -1.3 conserved protein of unknown function compare
PP_1362 -1.2 -2.7 pyruvate kinase II compare
PP_3417 -1.2 -3.4 D-gluconate transporter compare
PP_0393 -1.2 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4120 -1.2 -2.7 NADH-quinone oxidoreductase subunit B compare
PP_3946 -1.2 -1.7 HTH-type transcriptional repressor NicR compare
PP_5216 -1.1 -1.5 exopolyphosphatase compare
PP_5594 -1.1 -1.9 conserved protein of unknown function compare
PP_2253 -1.1 -1.5 Transcriptional regulator, GntR family compare
PP_0365 -1.1 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1231 -1.1 -3.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4320 -1.1 -2.8 cytochrome c-type biogenesis protein compare
PP_0364 -1.1 -4.0 pimeloyl-[acp] methyl ester esterase compare
PP_3770 -1.1 -2.0 conserved protein of unknown function compare
PP_5639 -1.1 -4.5 conserved exported protein of unknown function compare
PP_4561 -1.0 -1.0 stress response protein compare
PP_5225 -1.0 -1.3 frataxin compare
PP_t12 -1.0 -1.0 tRNA-Thr compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_1589 -1.0 -4.4 uridylyltransferase compare
PP_0261 -1.0 -3.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0246 -1.0 -2.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_5028 -1.0 -2.5 proline iminopeptidase compare
PP_0775 -1.0 -2.1 conserved protein of unknown function compare
PP_3790 -0.9 -4.6 diaminopimelate epimerase compare
PP_2217 -0.9 -2.2 enoyl-CoA hydratase compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_0725 -0.9 -2.5 conserved hypothetical TPR repeat protein compare
PP_5600 -0.9 -2.6 conserved protein of unknown function compare
PP_2820 -0.9 -2.7 HTH-type transcriptional regulator nfxB compare
PP_0855 -0.9 -1.6 conserved protein of unknown function compare
PP_2402 -0.9 -1.5 putative Sensor histidine kinase compare
PP_4196 -0.9 -1.9 conserved exported protein of unknown function compare
PP_4792 -0.9 -1.5 conserved exported protein of unknown function compare
PP_1428 -0.9 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_1268 -0.8 -1.2 putative HtrA suppressor protein sohA compare
PP_4129 -0.8 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4546 -0.8 -2.2 ATP-dependent helicase HrpA compare
PP_0291 -0.8 -1.3 conserved protein of unknown function compare
PP_3002 -0.8 -1.7 shikimate dehydrogenase-related enzyme compare
PP_0376 -0.8 -4.8 Coenzyme PQQ synthesis protein E compare
PP_1198 -0.8 -1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5075 -0.8 -5.1 glutamate synthase (NADPH) beta subunit compare
PP_1304 -0.8 -4.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5093 -0.8 -1.1 twitching motility protein compare
PP_0405 -0.8 -4.2 conserved protein of unknown function compare
PP_3519 -0.8 -0.9 putative Lipoprotein compare
PP_5035 -0.8 -3.3 Histidine utilization repressor compare
PP_2640 -0.8 -1.3 Acetyltransferase, GNAT family compare
PP_2000 -0.8 -0.8 amidophosphoribosyl transferase compare
PP_5548 -0.8 -2.5 protein of unknown function compare
PP_5217 -0.8 -4.2 Polyphosphate kinase compare
PP_0164 -0.8 -1.9 conserved protein of unknown function compare
PP_2903 -0.8 -1.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4699 -0.8 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5274 -0.8 -1.8 conserved protein of unknown function compare
PP_2163 -0.8 -3.5 VacJ lipoprotein compare
PP_1554 -0.8 -1.6 conserved protein of unknown function compare
PP_2661 -0.8 -2.1 conserved protein of unknown function compare
PP_5598 -0.8 -1.9 conserved protein of unknown function compare
PP_3817 -0.8 -2.8 Polyamine ABC transporter, ATP-binding protein compare
PP_1011 -0.8 -4.0 glucokinase compare
PP_3614 -0.8 -2.0 conserved membrane protein of unknown function compare
PP_4098 -0.8 -1.2 UvrABC system protein C compare
PP_1217 -0.8 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3487 -0.8 -1.9 conserved exported protein of unknown function compare
PP_1404 -0.7 -1.9 conserved protein of unknown function compare
PP_3346 -0.7 -1.7 Nickel transporter ATP-binding protein compare
PP_2959 -0.7 -2.3 Alkylhydroperoxidase AhpD domain protein compare
PP_4204 -0.7 -2.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3204 -0.7 -2.1 conserved protein of unknown function compare
PP_4099 -0.7 -7.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5571 -0.7 -1.0 conserved protein of unknown function compare
PP_1770 -0.7 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2510 -0.7 -0.7 conserved protein of unknown function compare
PP_3484 -0.7 -2.5 Response regulator receiver protein compare
PP_4124 -0.7 -1.9 NADH-quinone oxidoreductase subunit G compare
PP_0434 -0.7 -2.0 Anhydro-N-acetylmuramic acid kinase compare
PP_5230 -0.7 -1.6 Tyrosine recombinase XerC compare
PP_1550 -0.7 -2.3 Transcriptional regulator, Cro/CI family compare
PP_3098 -0.7 -0.8 conserved protein of unknown function compare
PP_1650 -0.7 -6.2 Sensor protein GacS compare
PP_2110 -0.7 -1.4 putative ribosomal large subunit pseudouridine synthase compare
PP_1110 -0.7 -1.3 serine acetyltransferase compare
PP_1790 -0.7 -1.8 putative Acylneuraminate cytidylyltransferase compare
PP_1979 -0.7 -2.3 putative Hydrolase compare
PP_2145 -0.7 -1.4 beta-N-acetylglucosaminidase compare
PP_2615 -0.7 -2.0 hemolysin-coregulated protein compare
PP_2152 -0.7 -1.4 glycerophosphoryl diester phosphodiesterase compare
PP_0377 -0.7 -0.9 coenzyme PQQ synthesis protein D compare
PP_0138 -0.7 -4.3 conserved membrane protein of unknown function compare
PP_2032 -0.7 -2.5 putative ATPase compare
PP_0084 -0.7 -3.7 HTH-type transcriptional regulator TrpI compare
PP_1355 -0.7 -3.7 Muropeptide permease AmpG compare
PP_0401 -0.7 -1.0 Ribosomal RNA small subunit methyltransferase A compare
PP_4848 -0.7 -1.4 Curved DNA-binding protein compare
PP_1293 -0.7 -1.4 molybdopterin synthase small subunit compare
PP_5104 -0.7 -3.5 thiazole synthase compare
PP_2882 -0.7 -2.0 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_5652 -0.7 -1.7 conserved protein of unknown function, phage origin compare
PP_5507 -0.7 -1.5 protein of unknown function compare
PP_3027 -0.6 -2.5 conserved protein of unknown function compare
PP_0846 -0.6 -0.5 DnaK-like molecular chaperone specific for IscU compare
PP_0575 -0.6 -2.3 conserved membrane protein of unknown function compare
PP_5505 -0.6 -1.6 conserved transmembrane protein of unknown function compare
PP_5701 -0.6 -1.0 conserved protein of unknown function compare
PP_4706 -0.6 -2.8 conserved protein of unknown function compare
PP_3378 -0.6 -1.0 putative 2-ketogluconokinase compare
PP_0653 -0.6 -0.9 conserved protein of unknown function compare
PP_4895 -0.6 -1.4 tRNA dimethylallyltransferase compare
PP_1575 -0.6 -1.3 conserved protein of unknown function compare
PP_1829 -0.6 -1.0 Hydrolase, alpha/beta fold family compare
PP_1568 -0.6 -0.9 conserved protein of unknown function compare
PP_2060 -0.6 -1.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4847 -0.6 -1.2 chaperone modulatory of CbpA co-chaperone protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms