Experiment set19IT026 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_10; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0292 -6.6 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -6.0 -4.1 tryptophan synthase alpha chain compare
PP_2370 -5.7 -3.9 conserved protein of unknown function compare
PP_0289 -5.2 -9.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1898 -5.2 -5.1 MotA/TolQ/ExbB proton channel family protein compare
PP_5015 -5.1 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5014 -5.0 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -4.9 -8.1 tryptophan synthase beta chain compare
PP_2371 -4.7 -7.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0290 -4.7 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4696 -4.7 -4.5 Nitrogen regulation protein NR(I) compare
PP_2168 -4.5 -11.2 Transaldolase compare
PP_1079 -4.4 -5.8 Ornithine carbamoyltransferase compare
PP_0420 -4.3 -9.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4679 -4.2 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -4.2 -12.2 homoserine O-acetyltransferase compare
PP_1995 -4.1 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0184 -4.0 -9.0 Argininosuccinate lyase compare
PP_3511 -4.0 -8.3 Branched-chain-amino-acid aminotransferase compare
PP_4678 -4.0 -12.4 Ketol-acid reductoisomerase compare
PP_0422 -4.0 -7.1 Indole-3-glycerol phosphate synthase compare
PP_0967 -3.8 -8.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5289 -3.8 -5.4 Acetylglutamate kinase compare
PP_2001 -3.7 -8.3 O-succinylhomoserine sulfhydrylase compare
PP_5098 -3.5 -6.6 methionine biosynthesis protein MetW compare
PP_2388 -3.4 -5.0 Transporter, LysE family compare
PP_4680 -3.4 -12.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -3.4 -12.7 Anthranilate synthase component 1 compare
PP_0421 -3.4 -6.3 Anthranilate phosphoribosyltransferase compare
PP_5185 -3.4 -5.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2414 -3.3 -3.2 conserved exported protein of unknown function compare
PP_1237 -3.3 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3999 -3.2 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1988 -3.1 -8.0 3-isopropylmalate dehydrogenase compare
PP_2088 -3.1 -4.1 RNA polymerase sigma factor SigX compare
PP_0966 -3.0 -6.6 Histidinol dehydrogenase compare
PP_1986 -3.0 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_5346 -2.9 -6.7 pyruvate carboxylase subunit B compare
PP_0293 -2.9 -1.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2402 -2.9 -2.8 putative Sensor histidine kinase compare
PP_5348 -2.7 -6.5 Transcriptional regulator, LysR family compare
PP_5303 -2.6 -4.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5155 -2.6 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4880 -2.6 -10.1 exoribonuclease R compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_1088 -2.5 -7.9 Argininosuccinate synthase compare
PP_2327 -2.5 -4.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4902 -2.5 -3.3 Oligoribonuclease compare
PP_5095 -2.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_0001 -2.5 -1.6 probable chromosome-partitioning protein compare
PP_1022 -2.5 -6.5 glucose 6-phosphate-1-dehydrogenase compare
PP_3318 -2.5 -2.5 conserved protein of unknown function compare
PP_0965 -2.4 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5347 -2.4 -7.0 pyruvate carboxylase subunit A compare
PP_0758 -2.4 -4.1 conserved protein of unknown function compare
PP_5128 -2.3 -5.7 Dihydroxy-acid dehydratase compare
PP_1025 -2.3 -7.5 2-isopropylmalate synthase compare
PP_1231 -2.2 -4.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4909 -2.2 -6.1 phosphoserine phosphatase compare
PP_4890 -2.2 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4058 -2.2 -6.9 1,4-alpha-glucan branching enzyme compare
PP_4994 -2.2 -4.9 conserved protein of unknown function compare
PP_5619 -2.1 -5.4 protein of unknown function compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4593 -2.0 -2.3 conserved protein of unknown function compare
PP_4895 -1.9 -1.9 tRNA dimethylallyltransferase compare
PP_5701 -1.9 -2.0 conserved protein of unknown function compare
PP_1985 -1.9 -3.8 3-isopropylmalate dehydratase large subunit compare
PP_4785 -1.9 -5.9 conserved exported protein of unknown function compare
PP_4804 -1.9 -3.6 RlpA-like lipoprotein compare
PP_2390 -1.8 -5.2 Transcriptional regulator, LysR family compare
PP_0735 -1.7 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_0547 -1.7 -5.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0719 -1.7 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4699 -1.7 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0787 -1.6 -3.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1654 -1.6 -2.7 cysteine synthase B compare
PP_0363 -1.6 -7.7 8-amino-7-oxononanoate synthase compare
PP_0362 -1.6 -7.6 Biotin synthase compare
PP_4782 -1.6 -4.9 Phosphomethylpyrimidine kinase compare
PP_5028 -1.6 -3.5 proline iminopeptidase compare
PP_2378 -1.6 -2.7 Fe/S biogenesis protein NfuA compare
PP_1362 -1.5 -2.7 pyruvate kinase II compare
PP_5075 -1.5 -7.5 glutamate synthase (NADPH) beta subunit compare
PP_1293 -1.5 -1.5 molybdopterin synthase small subunit compare
PP_5114 -1.5 -2.5 putative adenine methyltransferase compare
PP_1656 -1.5 -5.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4964 -1.5 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_2145 -1.4 -1.9 beta-N-acetylglucosaminidase compare
PP_2328 -1.4 -2.9 Phosphoadenosine phosphosulfate reductase compare
PP_0365 -1.4 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4984 -1.4 -6.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5748 -1.4 -1.3 cytochrome c heme lyase subunit compare
PP_3916 -1.3 -3.2 conserved protein of unknown function compare
PP_4480 -1.3 -5.0 arginine N-succinyltransferase, subunit alpha compare
PP_4517 -1.3 -1.3 conserved protein of unknown function compare
PP_4697 -1.3 -1.4 poly(A) polymerase compare
PP_3417 -1.2 -2.8 D-gluconate transporter compare
PP_1011 -1.2 -5.3 glucokinase compare
PP_3245 -1.2 -1.8 conserved protein of unknown function compare
PP_3757 -1.2 -2.1 Chemotaxis protein CheY compare
PP_0366 -1.2 -3.3 dethiobiotin synthetase compare
PP_1655 -1.2 -2.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5706 -1.2 -1.9 Sec translocation complex - SecG subunit compare
PP_1736 -1.2 -3.1 conserved protein of unknown function compare
PP_5058 -1.2 -2.7 Carboxy-terminal-processing protease compare
PP_1074 -1.2 -2.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0364 -1.2 -4.2 pimeloyl-[acp] methyl ester esterase compare
PP_3286 -1.2 -3.2 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1055 -1.2 -1.4 Type II secretion pathway protein GspN compare
PP_1987 -1.2 -1.9 Methlytransferase, UbiE/COQ5 family compare
PP_4830 -1.1 -3.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_0833 -1.1 -1.1 queuine tRNA-ribosyltransferase compare
PP_2530 -1.1 -1.9 conserved protein of unknown function compare
PP_5104 -1.1 -6.3 thiazole synthase compare
PP_0855 -1.1 -2.1 conserved protein of unknown function compare
PP_5227 -1.1 -4.4 diaminopimelate decarboxylase compare
PP_4952 -1.1 -0.8 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1310 -1.1 -1.7 conserved hypothetical protein compare
PP_0585 -1.1 -3.0 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4296 -1.1 -1.6 conserved exported protein of unknown function compare
PP_1553 -1.1 -1.2 conserved protein of unknown function compare
PP_4766 -1.1 -4.6 ATP-dependent RNA helicase compare
PP_5499 -1.1 -2.5 conserved protein of unknown function compare
PP_2203 -1.1 -1.7 conserved protein of unknown function compare
PP_0434 -1.1 -2.6 Anhydro-N-acetylmuramic acid kinase compare
PP_1876 -1.1 -2.2 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0025 -1.1 -1.1 hypothetical protein compare
PP_5076 -1.0 -6.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_3034 -1.0 -1.9 putative Regulator protein compare
PP_0291 -1.0 -1.8 conserved protein of unknown function compare
PP_1664 -1.0 -2.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_3891 -1.0 -1.5 conserved protein of unknown function compare
PP_0513 -1.0 -1.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1428 -1.0 -1.1 Sigma factor AlgU negative regulatory protein compare
PP_0725 -1.0 -2.4 conserved hypothetical TPR repeat protein compare
PP_3541 -1.0 -2.1 Transporter, MgtC family compare
PP_1303 -1.0 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_5090 -1.0 -1.5 putative cell division protein compare
PP_5533 -1.0 -1.3 conserved protein of unknown function compare
PP_4406 -1.0 -2.5 conserved protein of unknown function compare
PP_0138 -1.0 -5.7 conserved membrane protein of unknown function compare
PP_4213 -1.0 -2.6 putative dipeptidase compare
PP_3938 -1.0 -1.3 conserved protein of unknown function compare
PP_0888 -1.0 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_2032 -1.0 -4.0 putative ATPase compare
PP_2025 -1.0 -2.0 Exonuclease SbcD compare
PP_4271 -1.0 -0.8 conserved protein of unknown function compare
PP_2568 -1.0 -1.0 Ring-cleaving dioxygenase compare
PP_3110 -1.0 -1.8 protein of unknown function compare
PP_5203 -1.0 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_1001 -0.9 -2.1 arginine deiminase compare
PP_t64 -0.9 -2.6 tRNA-Gly compare
PP_4247 -0.9 -1.2 Exonuclease compare
PP_2878 -0.9 -1.3 conserved protein of unknown function compare
PP_5313 -0.9 -1.9 DNA-binding protein HU-alpha compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_0084 -0.9 -3.5 HTH-type transcriptional regulator TrpI compare
PP_4098 -0.9 -1.1 UvrABC system protein C compare
PP_4980 -0.9 -2.5 ATP-dependent RNA helicase compare
PP_1015 -0.9 -4.0 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_2044 -0.9 -1.0 conserved inner membrane protein of unknown function compare
PP_0306 -0.9 -1.5 conserved protein of unknown function compare
PP_1110 -0.9 -2.4 serine acetyltransferase compare
PP_2615 -0.9 -1.0 hemolysin-coregulated protein compare
PP_1589 -0.9 -4.1 uridylyltransferase compare
PP_5507 -0.9 -2.5 protein of unknown function compare
PP_2540 -0.9 -2.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5038 -0.9 -1.7 conserved lipoprotein of unknown function compare
PP_4977 -0.9 -4.1 5,10-methylenetetrahydrofolate reductase compare
PP_3649 -0.8 -1.4 Transcriptional regulator, GntR family compare
PP_4724 -0.8 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_4591 -0.8 -2.0 Ribonuclease D compare
PP_4944 -0.8 -1.9 Carbamoyltransferase compare
PP_5495 -0.8 -1.4 protein of unknown function compare
PP_2229 -0.8 -1.4 putative K(+)/H(+) antiporter subunit C compare
PP_4693 -0.8 -2.1 RNA polymerase-binding transcription factor DksA compare
PP_2375 -0.8 -5.0 cobalamin-dependent methionine synthase compare
PP_0153 -0.8 -1.6 hypothetical protein compare
PP_1109 -0.8 -4.9 Transcriptional regulator, GntR family compare
PP_2360 -0.8 -1.8 putative type 1 pili subunit CsuA/B protein compare
PP_2506 -0.8 -3.6 conserved membrane protein of unknown function compare
PP_3320 -0.8 -1.5 conserved protein of unknown function compare
PP_5472 -0.8 -2.3 conserved exported protein of unknown function compare
PP_5035 -0.8 -3.2 Histidine utilization repressor compare
PP_3198 -0.8 -1.1 Ferredoxin, 2Fe-2S compare
PP_0673 -0.8 -1.6 conserved protein of unknown function compare
PP_3376 -0.8 -2.8 putative phosphonate dehydrogenase compare
PP_1353 -0.8 -1.2 conserved membrane protein of unknown function compare
PP_3164 -0.8 -2.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_3808 -0.8 -1.0 Antibiotic synthesis protein MbtH compare
PP_5582 -0.7 -0.9 conserved protein of unknown function compare
PP_3917 -0.7 -1.8 conserved protein of unknown function compare
PP_1009 -0.7 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1233 -0.7 -1.9 sulfurtransferase compare
PP_3332 -0.7 -1.2 putative cytochrome c-type protein compare
PP_t49 -0.7 -2.0 tRNA-Met compare
PP_5654 -0.7 -1.0 putative phosphotriesterase compare
PP_4892 -0.7 -2.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1017 -0.7 -2.6 mannose/glucose ABC transporter, permease protein compare


Specific Phenotypes

For 1 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms