Experiment set19IT026 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_10; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_2121 +1.5 4.2 putative Lipoprotein compare
PP_5604 +1.3 3.3 putative subtilisin-like serine protease compare
PP_1186 +1.2 2.3 two component system DNA-binding transcriptional dual regulator compare
PP_5084 +1.2 8.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_3365 +1.1 1.9 Acetolactate synthase compare
PP_1410 +1.1 1.4 conserved protein of unknown function compare
PP_2847 +1.1 1.7 Urease accessory protein UreJ compare
PP_4066 +1.0 2.2 methylglutaconyl-CoA hydratase compare
PP_3637 +1.0 2.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1317 +1.0 3.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2330 +1.0 4.3 conserved protein of unknown function compare
PP_3926 +1.0 1.3 short-chain dehydrogenase compare
PP_5328 +1.0 2.4 putative phosphate transport system permease protein compare
PP_1325 +1.0 5.2 putative lipoprotein compare
PP_1097 +1.0 1.7 Methionine--tRNA ligase compare
PP_4814 +0.9 1.8 ATP-dependent protease La domain protein compare
PP_1322 +0.9 1.2 putative Lipoprotein compare
PP_1344 +0.9 1.5 conserved protein of unknown function compare
PP_4004 +0.9 3.1 DNA translocase FtsK compare
PP_0262 +0.9 2.4 conserved protein of unknown function compare
PP_0276 +0.9 1.4 Transcriptional regulator, Cro/CI family compare
PP_2581 +0.9 1.9 conserved protein of unknown function compare
PP_4581 +0.9 2.9 putative amidotransferase compare
PP_0633 +0.9 3.3 Type 4 fimbrial assembly protein PilC compare
PP_3449 +0.8 2.8 conserved exported protein of unknown function compare
PP_0274 +0.8 0.9 putative transcriptional regulator containing HTH domain compare
PP_4997 +0.8 1.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5600 +0.8 2.9 conserved protein of unknown function compare
PP_1872 +0.8 4.6 glutamate-pyruvate aminotransferase compare
PP_4301 +0.8 3.1 Pyruvate kinase compare
PP_0874 +0.8 1.9 conserved protein of unknown function compare
PP_4342 +0.8 2.6 flagellar synthesis regulator, putative ATPase compare
PP_2309 +0.8 1.4 conserved protein of unknown function compare
PP_1439 +0.8 1.8 conserved exported protein of unknown function compare
PP_4162 +0.8 2.0 conserved membrane protein of unknown function compare
PP_2883 +0.8 1.1 conserved protein of unknown function compare
PP_3551 +0.8 1.6 DNA-binding response regulator, LuxR family compare
PP_1381 +0.7 1.2 4-carboxymuconolactone decarboxylase compare
PP_0429 +0.7 3.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1909 +0.7 1.7 putative septum formation protein compare
PP_1994 +0.7 1.3 tRNA pseudouridine (38-40)synthase compare
PP_4482 +0.7 2.1 Transcriptional regulator, AraC family compare
PP_2907 +0.7 1.4 DNA-binding response regulator compare
PP_1468 +0.7 1.5 Tyrosine recombinase XerD compare
PP_4936 +0.7 4.2 O-antigen polymerase compare
PP_2631 +0.7 1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_3353 +0.7 2.7 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_2074 +0.7 2.3 Transcriptional regulator, LysR family compare
PP_5625 +0.7 2.6 conserved protein of unknown function compare
PP_3900 +0.7 2.2 hypothetical protein compare
PP_2331 +0.7 2.9 conserved membrane protein of unknown function compare
PP_5054 +0.7 1.8 glutaredoxin 3 compare
PP_4262 +0.7 1.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2765 +0.7 1.4 putative Sulfonate monooxygenase MsuD compare
PP_3866 +0.7 1.4 conserved protein of unknown function compare
PP_4136 +0.7 1.1 Transcriptional regulator, LuxR family compare
PP_3890 +0.7 2.5 conserved protein of unknown function compare
PP_0166 +0.7 5.4 HlyD family secretion protein compare
PP_4910 +0.7 2.6 conserved protein of unknown function compare
PP_1096 +0.7 1.3 putative electron transport complex protein compare
PP_2655 +0.7 2.5 conserved protein of unknown function compare
PP_4223 +0.7 1.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1555 +0.7 2.7 putative Phage integrase compare
PP_3398 +0.7 2.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2340 +0.7 2.3 conserved protein of unknown function compare
PP_5204 +0.7 2.6 conserved protein of unknown function compare
PP_3075 +0.6 2.5 putative transcriptional regulator compare
PP_3447 +0.6 0.9 conserved membrane protein of unknown function compare
PP_0168 +0.6 5.8 putative surface adhesion protein compare
PP_3304 +0.6 4.1 Multidrug resistance transporter, Bcr/CflA family compare
PP_4917 +0.6 2.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4519 +0.6 5.2 Agglutination protein compare
PP_4224 +0.6 2.8 Sensor histidine kinase compare
PP_4418 +0.6 1.6 conserved protein of unknown function compare
PP_0040 +0.6 2.0 hypothetical protein compare
PP_1694 +0.6 2.7 DNA recombination limiting inversions protein compare
PP_1808 +0.6 2.2 glucose-6-phosphate isomerase compare
PP_4626 +0.6 4.2 holin regulator of murein hydrolases compare
PP_4874 +0.6 0.8 50S ribosomal protein L9 compare
PP_2280 +0.6 1.3 conserved protein of unknown function compare
PP_5337 +0.6 2.4 LysR family transcriptional regulator compare
PP_3902 +0.6 1.1 conserved protein of unknown function compare
PP_2737 +0.6 0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4818 +0.6 2.4 ribosomal protein L11 methyltransferase compare
PP_1004 +0.6 1.1 conserved protein of unknown function compare
PP_1215 +0.6 1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_5167 +0.6 1.2 conserved hypothetical protein compare
PP_0502 +0.6 1.6 conserved protein of unknown function compare
PP_5575 +0.6 0.8 conserved protein of unknown function compare
PP_0333 +0.6 2.9 conserved exported protein of unknown function compare
PP_2503 +0.6 2.3 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0167 +0.6 5.2 Toxin secretion ATP-binding protein compare
PP_4375 +0.6 2.6 flagellar chaperone, inhibits premature FliC assembly compare
PP_1147 +0.6 2.3 conserved protein of unknown function compare
PP_3083 +0.6 2.6 putative Membrane protein compare
PP_5568 +0.6 2.6 conserved membrane protein of unknown function compare
PP_2785 +0.6 2.3 conserved exported protein of unknown function compare
PP_2976 +0.6 1.2 putative transposase compare
PP_3201 +0.6 1.8 BNR domain protein compare
PP_2715 +0.6 2.1 ArsH protein compare
PP_5274 +0.6 1.0 conserved protein of unknown function compare
PP_3761 +0.6 4.2 Sensor histidine kinase/response regulator compare
PP_2575 +0.6 1.3 conserved exported protein of unknown function compare
PP_2387 +0.6 1.7 conserved protein of unknown function compare
PP_3073 +0.6 2.1 3-hydroxybutyrate dehydrogenase compare
PP_0630 +0.6 0.8 DNA gyrase inhibitor YacG compare
PP_3730 +0.6 1.3 Transcriptional regulatory protein AruR compare
PP_1623 +0.6 3.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_4362 +0.6 1.7 conserved protein of unknown function compare
PP_3074 +0.6 2.2 D-beta-hydroxybutyrate permease compare
PP_3339 +0.6 1.9 conserved exported protein of unknown function compare
PP_3314 +0.6 2.0 Heat shock protein, HSP20 family compare
PP_5093 +0.6 1.1 twitching motility protein compare
PP_3874 +0.6 1.6 conserved protein of unknown function compare
PP_0512 +0.6 1.5 hypothetical protein compare
PP_5586 +0.6 1.4 exported protein of unknown function compare
PP_3894 +0.6 3.0 putative Phage replication protein O compare
PP_4256 +0.6 1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_3738 +0.6 1.1 putative Transcriptional regulator VanR compare
PP_0123 +0.6 2.9 DNA polymerase I, 5 compare
PP_3234 +0.6 2.1 Heat shock protein, HSP20 family compare
PP_4386 +0.5 2.8 flagellar basal-body rod protein FlgF compare
PP_4373 +0.5 4.1 Transcriptional regulator FleQ compare
PP_1967 +0.5 2.4 tRNA D-aminoacylase compare
PP_1864 +0.5 0.8 conserved protein of unknown function compare
PP_4786 +0.5 2.0 conserved protein of unknown function compare
PP_5338 +0.5 0.9 aspartate ammonia-lyase compare
PP_3127 +0.5 3.0 putative Exopolysaccharide transport protein compare
PP_2764 +0.5 2.0 FMN reductase (NADPH) compare
PP_0165 +0.5 4.1 GGDEF domain protein compare
PP_2890 +0.5 2.0 exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI compare
PP_4941 +0.5 2.5 conserved exported protein of unknown function compare
PP_0711 +0.5 1.4 putative hydrolase compare
PP_0642 +0.5 2.1 conserved membrane protein of unknown function compare
PP_4942 +0.5 1.3 conserved protein of unknown function compare
PP_5110 +0.5 0.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2153 +0.5 1.1 conserved protein of unknown function compare
PP_1368 +0.5 1.8 putative membrane protein containing a glycosyltransferase domain compare
PP_3971 +0.5 1.2 conserved protein of unknown function compare
PP_5358 +0.5 2.6 conserved protein of unknown function compare
PP_1087 +0.5 3.2 Outer membrane protein, OmpA family compare
PP_4165 +0.5 2.7 conserved protein of unknown function compare
PP_0587 +0.5 1.9 conserved exported protein of unknown function compare
PP_3771 +0.5 1.9 conserved protein of unknown function compare
PP_2442 +0.5 1.0 conserved protein of unknown function, DUF480 family compare
PP_3559 +0.5 2.2 glycine betaine ABC transporter (permease) compare
PP_2435 +0.5 1.2 cysteine desulfurase compare
PP_1455 +0.5 1.0 conserved protein of unknown function compare
PP_4778 +0.5 1.5 23S rRNA pseudouridine 2457 synthase compare
PP_4938 +0.5 3.4 putative Glycosyl transferase compare
PP_4707 +0.5 1.8 OsmY-related protein compare
PP_2181 +0.5 1.5 Transcriptional regulator, Cro/CI family compare
PP_0240 +0.5 1.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4669 +0.5 1.1 OmpA family protein compare
PP_3564 +0.5 2.0 Transcriptional regulator, AraC family compare
PP_3522 +0.5 1.0 conserved protein of unknown function compare
PP_2873 +0.5 1.9 conserved protein of unknown function, UPF0145 family compare
PP_1319 +0.5 2.2 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3488 +0.5 1.6 Sco1/SenC family protein compare
PP_3265 +0.5 1.1 putative phosphohydrolase of unknown function compare
PP_2729 +0.5 2.6 conserved protein of unknown function compare
PP_1168 +0.5 1.9 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) compare
PP_0257 +0.5 1.8 protein sulfur transferase compare
PP_0108 +0.5 1.3 conserved protein of unknown function compare
PP_5182 +0.5 2.4 polyamine:pyruvate transaminase compare
PP_4358 +0.5 2.6 flagellar synthesis, switching and energizing component compare
PP_1783 +0.5 0.8 dTDP-glucose pyrophosphorylase compare
PP_0385 +0.5 2.6 putative serine acetyltransferase compare
PP_3640 +0.5 1.8 Transcriptional regulator, AraC family compare
PP_3988 +0.5 2.6 conserved protein of unknown function compare
PP_1020 +0.5 0.8 putative glucose-6-phosphate 1-epimerase compare
PP_0143 +0.5 3.1 conserved membrane protein of unknown function compare
PP_1513 +0.5 1.4 Ribosomal RNA small subunit methyltransferase J compare
PP_3928 +0.5 2.3 conserved exported protein of unknown function compare
PP_1833 +0.5 1.6 conserved protein of unknown function compare
PP_1473 +0.5 1.5 conserved protein of unknown function compare
PP_4961 +0.5 0.9 putative Lipoprotein compare
PP_0676 +0.5 1.9 putative Transcription elongation factor compare
PP_4133 +0.5 0.9 Transcriptional regulator-related protein compare
PP_5548 +0.5 2.0 protein of unknown function compare
PP_3036 +0.5 1.0 conserved protein of unknown function compare
PP_5547 +0.5 1.6 protein of unknown function compare
PP_1709 +0.5 1.6 Fumarylacetoacetate hydrolase family protein compare
PP_1504 +0.5 2.1 conserved protein of unknown function compare
PP_3359 +0.5 0.6 putative Hydroxycinnamic acid degradation regulator compare
PP_2823 +0.5 2.5 Methyl-accepting chemotaxis transducer compare
PP_5225 +0.5 0.8 frataxin compare
PP_4681 +0.5 1.0 conserved protein of unknown function compare
PP_2447 +0.5 1.4 conserved exported protein of unknown function compare
PP_0307 +0.5 1.6 conserved exported protein of unknown function compare
PP_2379 +0.5 1.3 putative cytochrome oxidase biogenesis protein compare
PP_3904 +0.5 1.2 conserved protein of unknown function compare
PP_2675 +0.5 1.0 Cytochrome c-type protein compare
PP_4820 +0.5 2.9 tRNA-dihydrouridine synthase B compare
PP_3117 +0.5 1.4 putative protein involved in error-prone processing of DNA lesions compare
PP_2160 +0.4 1.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5295 +0.4 0.9 conserved protein of unknown function compare
PP_4266 +0.4 1.3 Adenine phosphoribosyltransferase compare
PP_4230 +0.4 2.4 conserved exported protein of unknown function compare
PP_4813 +0.4 2.7 PAP2 family protein/DedA family protein compare


Specific Phenotypes

For 1 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms