Experiment set19IT025 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic acid monopotassium salt monohydrate; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22565 -5.0 -1.5 formyltetrahydrofolate deformylase compare
PS417_27865 -3.2 -4.3 LysR family transcriptional regulator compare
PS417_08135 -3.2 -6.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23770 -3.0 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_25710 -3.0 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_08125 -2.9 -0.9 prephenate dehydratase compare
PS417_21655 -2.6 -1.4 aspartate kinase compare
PS417_20985 -2.5 -2.8 porin compare
PS417_27870 -2.5 -4.2 ATP-dependent DNA helicase RecG compare
PS417_27040 -2.5 -2.8 3-phosphoglycerate dehydrogenase compare
PS417_06680 -2.3 -6.9 nuclease PIN compare
PS417_19835 -2.3 -1.7 flagellar biosynthesis protein FliS compare
PS417_03260 -2.2 -1.9 5S ribosomal RNA compare
PS417_21630 -2.2 -4.0 magnesium transporter compare
PS417_23775 -2.1 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_27800 -2.1 -3.4 exodeoxyribonuclease III compare
PS417_26730 -1.9 -1.2 pyrroline-5-carboxylate reductase compare
PS417_04375 -1.9 -2.8 ABC transporter ATP-binding protein compare
PS417_00185 -1.8 -4.4 tryptophan synthase subunit beta compare
PS417_26985 -1.8 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_09235 -1.8 -1.4 molecular chaperone compare
PS417_23810 -1.8 -7.6 acetolactate synthase 3 catalytic subunit compare
PS417_19955 -1.8 -2.4 hypothetical protein compare
PS417_21575 -1.7 -8.0 chemotaxis protein compare
PS417_23545 -1.7 -2.2 gamma-glutamyl kinase compare
PS417_20025 -1.7 -1.6 alpha-ribazole phosphatase compare
PS417_16490 -1.7 -1.6 cell division protein FtsK compare
PS417_02415 -1.7 -4.6 phosphoserine phosphatase compare
PS417_00180 -1.7 -2.5 tryptophan synthase subunit alpha compare
PS417_24585 -1.6 -9.2 AMP nucleosidase compare
PS417_24155 -1.6 -1.9 ATP-binding protein compare
PS417_24705 -1.6 -3.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_01605 -1.5 -1.4 phosphoglycerate mutase compare
PS417_02575 -1.5 -3.8 membrane protein compare
PS417_19870 -1.5 -4.7 flagellar rod assembly protein FlgJ compare
PS417_18310 -1.5 -2.0 hypothetical protein compare
PS417_27425 -1.5 -5.2 exopolyphosphatase compare
PS417_19690 -1.4 -5.0 histidine kinase compare
PS417_19860 -1.4 -9.7 flagellar hook protein FlgL compare
PS417_26850 -1.4 -1.0 twin-arginine translocation pathway signal protein compare
PS417_16000 -1.4 -2.0 chemotaxis protein CheY compare
PS417_19350 -1.4 -3.9 GTP cyclohydrolase compare
PS417_22450 -1.4 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_19650 -1.4 -4.2 chemotaxis protein CheW compare
PS417_12855 -1.4 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08540 -1.4 -2.5 RNA helicase compare
PS417_18560 -1.4 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_19850 -1.4 -6.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_02975 -1.3 -3.3 3-dehydroquinate dehydratase compare
PS417_02000 -1.3 -7.2 glutamate synthase compare
PS417_02005 -1.3 -7.2 glutamate synthase compare
PS417_04595 -1.3 -2.4 cell division protein MraZ compare
PS417_01565 -1.3 -5.0 imidazole glycerol phosphate synthase compare
PS417_02560 -1.3 -2.0 23S rRNA methyltransferase compare
PS417_05815 -1.2 -3.3 recombinase RecA compare
PS417_02365 -1.2 -2.0 hypothetical protein compare
PS417_02555 -1.2 -7.7 exoribonuclease R compare
PS417_27245 -1.2 -4.0 aminotransferase DegT compare
PS417_21680 -1.2 -1.3 succinylglutamate desuccinylase compare
PS417_15085 -1.2 -3.3 ATPase AAA compare
PS417_13165 -1.2 -1.3 peroxidase compare
PS417_21585 -1.2 -5.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19840 -1.2 -7.3 flagellar cap protein FliD compare
PS417_04585 -1.2 -1.8 hypothetical protein compare
PS417_24745 -1.2 -2.6 gamma-glutamyl phosphate reductase compare
PS417_00075 -1.1 -2.4 hypothetical protein compare
PS417_23025 -1.1 -2.9 murein transglycosylase compare
PS417_26805 -1.1 -1.0 cell division protein FtsE compare
PS417_02160 -1.1 -1.3 hypothetical protein compare
PS417_23385 -1.1 -4.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_06530 -1.1 -2.0 membrane protein compare
PS417_19865 -1.1 -7.1 flagellar hook protein FlgK compare
PS417_03560 -1.1 -1.6 GTP-binding protein compare
PS417_19795 -1.1 -9.2 flagellar assembly protein FliH compare
PS417_23805 -1.1 -2.7 acetolactate synthase 3 regulatory subunit compare
PS417_01620 -1.1 -1.6 preprotein translocase subunit SecB compare
PS417_15110 -1.1 -3.9 protein BatD compare
PS417_21565 -1.1 -3.3 flagellar basal body rod protein FlgC compare
PS417_07710 -1.1 -3.3 membrane protein compare
PS417_16510 -1.1 -3.2 Clp protease ClpX compare
PS417_19885 -1.1 -2.3 flagellar basal body rod protein FlgG compare
PS417_27795 -1.1 -0.8 orotate phosphoribosyltransferase compare
PS417_21570 -1.0 -4.3 flagellar basal body rod protein FlgB compare
PS417_15135 -1.0 -1.2 hypothetical protein compare
PS417_01855 -1.0 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_06370 -1.0 -1.2 cold-shock protein compare
PS417_18600 -1.0 -3.1 isopropylmalate isomerase compare
PS417_04420 -1.0 -6.5 histidinol dehydrogenase compare
PS417_16160 -1.0 -2.0 ABC transporter substrate-binding protein compare
PS417_01915 -1.0 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_12805 -1.0 -6.1 glycogen branching protein compare
PS417_25720 -1.0 -4.5 anthranilate synthase component II compare
PS417_16720 -1.0 -1.1 membrane protein compare
PS417_23375 -1.0 -1.4 cytochrome C oxidase compare
PS417_07640 -1.0 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_15105 -1.0 -3.8 membrane protein compare
PS417_18595 -1.0 -2.2 3-isopropylmalate dehydratase compare
PS417_15895 -1.0 -1.5 iron dicitrate transport regulator FecR compare
PS417_21555 -1.0 -6.3 flagellar hook protein FlgE compare
PS417_25715 -1.0 -2.8 anthranilate phosphoribosyltransferase compare
PS417_06355 -1.0 -3.4 protein-L-isoaspartate O-methyltransferase compare
PS417_28070 -0.9 -5.7 phosphate ABC transporter ATP-binding protein compare
PS417_19730 -0.9 -3.6 flagellar biosynthesis protein FliR compare
PS417_19695 -0.9 -4.6 flagellar biosynthesis sigma factor compare
PS417_19655 -0.9 -1.4 chemotaxis protein CheW compare
PS417_07275 -0.9 -1.5 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_23950 -0.9 -1.4 polynucleotide phosphorylase/polyadenylase compare
PS417_04390 -0.9 -3.3 toluene tolerance protein compare
PS417_24535 -0.9 -1.6 membrane protein compare
PS417_19605 -0.9 -1.2 hypothetical protein compare
PS417_09140 -0.9 -2.3 biopolymer transporter ExbB compare
PS417_19825 -0.9 -7.8 ATPase AAA compare
PS417_05820 -0.9 -1.7 recombinase RecX compare
PS417_07245 -0.9 -2.2 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_05635 -0.9 -3.5 membrane protein compare
PS417_19790 -0.9 -2.1 ATP synthase compare
PS417_04365 -0.9 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_13965 -0.9 -2.1 acetoin utilization protein compare
PS417_19880 -0.9 -4.1 flagellar basal body L-ring protein compare
PS417_19660 -0.9 -4.7 cobalamin biosynthesis protein CobQ compare
PS417_20610 -0.9 -1.3 hypothetical protein compare
PS417_19710 -0.9 -6.7 flagellar biosynthesis protein FlhA compare
PS417_06685 -0.9 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_19765 -0.9 -4.5 flagellar hook-length control protein compare
PS417_19705 -0.9 -2.2 flagellar biosynthesis regulator FlhF compare
PS417_26685 -0.9 -1.5 hypothetical protein compare
PS417_21595 -0.9 -1.6 flagellar biosynthesis protein FlgN compare
PS417_06205 -0.9 -4.7 methionine aminopeptidase compare
PS417_18540 -0.9 -1.9 colicin V production CvpA compare
PS417_01635 -0.9 -2.6 nitrogen regulation protein NR(I) compare
PS417_26760 -0.8 -2.1 oxidase compare
PS417_02485 -0.8 -1.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_13490 -0.8 -1.4 hypothetical protein compare
PS417_02280 -0.8 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_25725 -0.8 -5.3 anthranilate synthase component I compare
PS417_12310 -0.8 -4.5 methionine synthase compare
PS417_22210 -0.8 -1.3 AraC family transcriptional regulator compare
PS417_04380 -0.8 -0.7 ABC transporter permease compare
PS417_28080 -0.8 -5.8 phosphate ABC transporter permease compare
PS417_19745 -0.8 -4.5 flagellar assembly protein FliO compare
PS417_15100 -0.8 -1.9 BatB protein compare
PS417_15640 -0.8 -1.9 DNA methylase compare
PS417_15805 -0.8 -1.3 transporter compare
PS417_02255 -0.8 -1.7 lipopolysaccharide kinase compare
PS417_05975 -0.8 -0.7 chemotaxis protein CheW compare
PS417_17855 -0.8 -2.6 major facilitator transporter compare
PS417_19830 -0.8 -5.0 flagellar assembly protein FliT compare
PS417_19740 -0.8 -4.0 flagellar biosynthesis protein flip compare
PS417_03100 -0.8 -0.6 pilus assembly protein compare
PS417_23330 -0.8 -1.8 hypothetical protein compare
PS417_04385 -0.8 -1.8 organic solvent ABC transporter substrate-binding protein compare
PS417_03300 -0.8 -1.5 alanine acetyltransferase compare
PS417_18585 -0.8 -2.8 3-isopropylmalate dehydrogenase compare
PS417_19675 -0.8 -2.5 chemotaxis protein CheY compare
PS417_04290 -0.8 -2.7 hypothetical protein compare
PS417_26605 -0.8 -0.9 malonate decarboxylase subunit beta compare
PS417_21560 -0.8 -2.5 flagellar basal body rod modification protein FlgD compare
PS417_24370 -0.8 -0.7 (2Fe-2S)-binding protein compare
PS417_08155 -0.8 -0.9 integration host factor subunit beta compare
PS417_00465 -0.8 -2.0 hypothetical protein compare
PS417_14315 -0.8 -2.0 2,5-dioxovalerate dehydrogenase compare
PS417_23095 -0.8 -0.7 exodeoxyribonuclease compare
PS417_21185 -0.8 -3.5 hypothetical protein compare
PS417_22520 -0.8 -1.4 histidine kinase compare
PS417_26770 -0.8 -0.9 tRNA (guanine-N7)-methyltransferase compare
PS417_07655 -0.8 -1.5 glycerophosphodiester phosphodiesterase compare
PS417_18025 -0.8 -1.5 cytochrome C compare
PS417_13050 -0.8 -1.6 N-acetylglucosamine-6-sulfatase compare
PS417_14245 -0.8 -1.5 hypothetical protein compare
PS417_24500 -0.8 -2.3 DEAD/DEAH box helicase compare
PS417_28075 -0.7 -2.7 phosphate ABC transporter permease compare
PS417_19735 -0.7 -3.9 flagellar biosynthesis protein FliQ compare
PS417_15510 -0.7 -1.1 hypothetical protein compare
PS417_01575 -0.7 -1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_05865 -0.7 -0.8 hypothetical protein compare
PS417_17805 -0.7 -1.7 microcin B17 processing protein McbC compare
PS417_14425 -0.7 -1.7 alkylhydroperoxidase compare
PS417_17835 -0.7 -1.7 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_06200 -0.7 -3.2 protein-PII uridylyltransferase compare
PS417_14985 -0.7 -2.3 Fe-S protein compare
PS417_15495 -0.7 -1.9 FAD-dependent oxidoreductase compare
PS417_08130 -0.7 -1.0 aspartate aminotransferase compare
PS417_08170 -0.7 -4.2 capsular biosynthesis protein compare
PS417_13205 -0.7 -1.4 isochorismate-pyruvate lyase compare
PS417_08220 -0.7 -0.6 epimerase compare
PS417_23835 -0.7 -1.7 hypothetical protein compare
PS417_19285 -0.7 -1.1 ankyrin compare
PS417_01560 -0.7 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_27315 -0.7 -0.9 hypothetical protein compare
PS417_24135 -0.7 -1.2 hypothetical protein compare
PS417_21430 -0.7 -0.9 3-oxoacyl-ACP synthase compare
PS417_22795 -0.7 -1.2 exclusion suppressor FxsA compare
PS417_27215 -0.7 -1.2 hypothetical protein compare
PS417_04415 -0.7 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_12355 -0.7 -1.2 magnesium chelatase compare
PS417_00810 -0.7 -1.2 RNA polymerase sigma factor compare
PS417_17860 -0.7 -2.3 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_22250 -0.7 -1.1 pseudouridine synthase compare
PS417_19785 -0.7 -2.0 flagellar biogenesis protein compare
PS417_00220 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments