Experiment set19IT025 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_10; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.6 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0082 -4.9 -8.2 tryptophan synthase alpha chain compare
PP_0966 -4.8 -10.3 Histidinol dehydrogenase compare
PP_5303 -4.7 -7.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5347 -4.5 -13.6 pyruvate carboxylase subunit A compare
PP_0290 -4.1 -7.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0422 -4.0 -5.6 Indole-3-glycerol phosphate synthase compare
PP_4678 -4.0 -12.8 Ketol-acid reductoisomerase compare
PP_0083 -3.8 -7.2 tryptophan synthase beta chain compare
PP_1988 -3.8 -6.9 3-isopropylmalate dehydrogenase compare
PP_4680 -3.7 -11.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -3.7 -7.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0184 -3.7 -7.4 Argininosuccinate lyase compare
PP_1985 -3.7 -5.3 3-isopropylmalate dehydratase large subunit compare
PP_2371 -3.6 -7.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4699 -3.6 -5.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2370 -3.6 -3.9 conserved protein of unknown function compare
PP_5014 -3.5 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0421 -3.5 -5.4 Anthranilate phosphoribosyltransferase compare
PP_0417 -3.5 -14.1 Anthranilate synthase component 1 compare
PP_5185 -3.5 -5.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0787 -3.4 -3.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4696 -3.3 -6.8 Nitrogen regulation protein NR(I) compare
PP_1995 -3.3 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5097 -3.3 -11.2 homoserine O-acetyltransferase compare
PP_2168 -3.2 -7.7 Transaldolase compare
PP_5346 -3.2 -6.9 pyruvate carboxylase subunit B compare
PP_0758 -3.1 -6.4 conserved protein of unknown function compare
PP_0420 -3.1 -8.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4902 -3.1 -3.7 Oligoribonuclease compare
PP_3999 -3.1 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5098 -3.0 -5.4 methionine biosynthesis protein MetW compare
PP_5128 -3.0 -6.6 Dihydroxy-acid dehydratase compare
PP_0065 -3.0 -5.0 NAD-binding component of TrK potassium transporter compare
PP_2001 -2.9 -7.7 O-succinylhomoserine sulfhydrylase compare
PP_0289 -2.9 -6.2 Imidazoleglycerol-phosphate dehydratase compare
PP_5155 -2.9 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5348 -2.8 -5.6 Transcriptional regulator, LysR family compare
PP_1986 -2.8 -2.2 3-isopropylmalate dehydratase small subunit compare
PP_4890 -2.8 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_1231 -2.7 -5.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4880 -2.7 -10.3 exoribonuclease R compare
PP_1088 -2.7 -7.7 Argininosuccinate synthase compare
PP_5015 -2.7 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4679 -2.6 -4.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3417 -2.6 -5.6 D-gluconate transporter compare
PP_3511 -2.6 -6.2 Branched-chain-amino-acid aminotransferase compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_5095 -2.6 -1.6 pyrroline-5-carboxylate reductase compare
PP_0292 -2.6 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1025 -2.5 -9.4 2-isopropylmalate synthase compare
PP_1898 -2.5 -5.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0965 -2.5 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1664 -2.4 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_2388 -2.4 -3.0 Transporter, LysE family compare
PP_4909 -2.3 -6.0 phosphoserine phosphatase compare
PP_4782 -2.3 -5.1 Phosphomethylpyrimidine kinase compare
PP_0401 -2.3 -3.3 Ribosomal RNA small subunit methyltransferase A compare
PP_2402 -2.3 -2.6 putative Sensor histidine kinase compare
PP_4785 -2.2 -9.7 conserved exported protein of unknown function compare
PP_4122 -2.2 -2.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5104 -2.1 -5.8 thiazole synthase compare
PP_4058 -2.1 -7.2 1,4-alpha-glucan branching enzyme compare
PP_4895 -2.1 -1.5 tRNA dimethylallyltransferase compare
PP_5054 -2.1 -2.4 glutaredoxin 3 compare
PP_2328 -2.1 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0735 -2.0 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_1654 -2.0 -3.6 cysteine synthase B compare
PP_0362 -2.0 -9.0 Biotin synthase compare
PP_4952 -2.0 -1.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4984 -2.0 -6.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1079 -2.0 -4.1 Ornithine carbamoyltransferase compare
PP_1589 -2.0 -5.9 uridylyltransferase compare
PP_4994 -1.9 -4.6 conserved protein of unknown function compare
PP_0364 -1.9 -5.4 pimeloyl-[acp] methyl ester esterase compare
PP_1233 -1.8 -2.5 sulfurtransferase compare
PP_5225 -1.8 -1.6 frataxin compare
PP_5267 -1.7 -1.8 putative cytochrome c5 compare
PP_0719 -1.7 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0291 -1.7 -1.9 conserved protein of unknown function compare
PP_0365 -1.7 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1022 -1.7 -4.0 glucose 6-phosphate-1-dehydrogenase compare
PP_0363 -1.6 -7.4 8-amino-7-oxononanoate synthase compare
PP_5058 -1.6 -4.3 Carboxy-terminal-processing protease compare
PP_2390 -1.6 -4.0 Transcriptional regulator, LysR family compare
PP_5289 -1.5 -2.0 Acetylglutamate kinase compare
PP_0725 -1.5 -5.6 conserved hypothetical TPR repeat protein compare
PP_0366 -1.5 -2.4 dethiobiotin synthetase compare
PP_5028 -1.5 -3.0 proline iminopeptidase compare
PP_3580 -1.5 -2.5 conserved protein of unknown function compare
PP_0872 -1.4 -4.5 Peptide chain release factor 3 compare
PP_4517 -1.4 -1.7 conserved protein of unknown function compare
PP_4126 -1.4 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_3603 -1.4 -4.0 Transcriptional regulator, GntR family compare
PP_4693 -1.4 -4.3 RNA polymerase-binding transcription factor DksA compare
PP_3295 -1.4 -3.4 YeeE/YedE family protein compare
PP_5022 -1.3 -1.8 Glutamine transport ATP-binding protein GlnQ compare
PP_3938 -1.3 -1.9 conserved protein of unknown function compare
PP_2622 -1.3 -2.9 conserved protein of unknown function compare
PP_1015 -1.3 -4.5 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_2378 -1.3 -2.2 Fe/S biogenesis protein NfuA compare
PP_3766 -1.3 -2.1 Lactoylglutathione lyase compare
PP_1528 -1.3 -1.3 conserved protein of unknown function compare
PP_4828 -1.3 -1.2 Precorrin-8X methylmutase compare
PP_5075 -1.3 -6.1 glutamate synthase (NADPH) beta subunit compare
PP_3241 -1.3 -1.3 conserved exported protein of unknown function compare
PP_2121 -1.3 -2.1 putative Lipoprotein compare
PP_0607 -1.3 -1.7 putative Type IV pili biogenesis protein FimT compare
PP_1679 -1.2 -3.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5491 -1.2 -2.0 conserved protein of unknown function with SEC-C motif domain compare
PP_1656 -1.2 -4.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_0195 -1.2 -1.4 conserved protein of unknown function compare
PP_1829 -1.2 -1.2 Hydrolase, alpha/beta fold family compare
PP_1304 -1.2 -5.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2327 -1.2 -2.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1011 -1.2 -5.2 glucokinase compare
PP_1655 -1.2 -2.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1181 -1.2 -4.1 DNA-binding response regulator compare
PP_3833 -1.2 -2.5 Response regulator compare
PP_4787 -1.2 -1.7 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5203 -1.2 -3.6 5-formyltetrahydrofolate cyclo-ligase compare
PP_2031 -1.2 -2.1 conserved protein of unknown function compare
PP_1128 -1.1 -2.3 OmpA family protein compare
PP_4977 -1.1 -5.1 5,10-methylenetetrahydrofolate reductase compare
PP_4766 -1.1 -4.4 ATP-dependent RNA helicase compare
PP_1045 -1.1 -1.7 Type II secretion pathway protein XcpP compare
PP_2073 -1.1 -3.3 Acetyltransferase, GNAT family compare
PP_1906 -1.1 -1.7 ribosomal large subunit pseudouridine synthase C compare
PP_0775 -1.1 -1.7 conserved protein of unknown function compare
PP_0547 -1.1 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5076 -1.1 -6.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_2499 -1.1 -1.0 conserved protein of unknown function compare
PP_1824 -1.1 -1.2 Smr domain protein compare
PP_0087 -1.1 -1.5 conserved exported protein of unknown function compare
PP_4480 -1.1 -4.2 arginine N-succinyltransferase, subunit alpha compare
PP_1734 -1.0 -1.7 Probable septum site-determining protein MinC compare
PP_5508 -1.0 -1.1 conserved protein of unknown function compare
PP_3770 -1.0 -1.3 conserved protein of unknown function compare
PP_4804 -1.0 -2.1 RlpA-like lipoprotein compare
PP_4482 -1.0 -2.0 Transcriptional regulator, AraC family compare
PP_4922 -1.0 -5.5 Phosphomethylpyrimidine synthase compare
PP_2375 -1.0 -5.6 cobalamin-dependent methionine synthase compare
PP_4993 -1.0 -2.9 Glutathione synthetase compare
PP_5350 -1.0 -1.9 Transcriptional regulator, RpiR family compare
PP_3506 -1.0 -1.9 Magnesium chelatase, subunit ChII compare
PP_0022 -1.0 -0.9 hypothetical protein compare
PP_2285 -1.0 -2.7 conserved exported protein of unknown function compare
PP_5227 -1.0 -3.7 diaminopimelate decarboxylase compare
PP_0138 -1.0 -5.0 conserved membrane protein of unknown function compare
PP_3192 -1.0 -3.2 conserved protein of unknown function compare
PP_1764 -1.0 -1.8 Phosphoglycolate phosphatase 2 compare
PP_0957 -1.0 -1.1 D-arabinose 5-phosphate isomerase compare
PP_2322 -1.0 -2.7 Major outer membrane lipoprotein compare
PP_4317 -1.0 -1.6 conserved protein of unknown function compare
PP_1676 -0.9 -2.1 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4831 -0.9 -3.1 putative cobalt-precorrin-6A synthase compare
PP_4964 -0.9 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_4827 -0.9 -4.7 Precorrin-2 C(20)-methyltransferase compare
PP_4262 -0.9 -1.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5514 -0.9 -1.3 conserved protein of unknown function compare
PP_1268 -0.9 -1.3 putative HtrA suppressor protein sohA compare
PP_4988 -0.9 -3.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3245 -0.9 -1.1 conserved protein of unknown function compare
PP_4308 -0.9 -1.3 Transcriptional regulator, AsnC family compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_4560 -0.9 -1.9 putative Ribonuclease BN compare
PP_2032 -0.9 -3.8 putative ATPase compare
PP_4379 -0.9 -2.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3508 -0.9 -2.4 Protein CobW compare
PP_5652 -0.9 -1.2 conserved protein of unknown function, phage origin compare
PP_5090 -0.9 -1.0 putative cell division protein compare
PP_5SB -0.9 -1.4 5S ribosomal RNA compare
PP_5507 -0.9 -2.4 protein of unknown function compare
PP_2848 -0.9 -2.3 urease accessory protein compare
PP_2336 -0.9 -1.8 aconitate hydratase 1 compare
PP_0869 -0.9 -2.2 osmoprotectant ABC transporter permease subunit compare
PP_1111 -0.8 -2.8 putative Synthetase compare
PP_5328 -0.8 -1.1 putative phosphate transport system permease protein compare
PP_5254 -0.8 -2.8 conserved protein of unknown function compare
PP_3866 -0.8 -1.4 conserved protein of unknown function compare
PP_1237 -0.8 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1110 -0.8 -1.2 serine acetyltransferase compare
PP_t49 -0.8 -2.5 tRNA-Met compare
PP_3122 -0.8 -2.6 acetoacetyl CoA-transferase (subunit A) compare
PP_4532 -0.8 -1.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1678 -0.8 -1.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5400 -0.8 -3.6 conserved protein of unknown function compare
PP_4829 -0.8 -1.7 putative precorrin-3B synthase compare
PP_3919 -0.8 -2.2 conserved protein of unknown function compare
PP_2987 -0.8 -2.7 conserved protein of unknown function compare
PP_5519 -0.8 -1.4 conserved protein of unknown function of phage origin compare
PP_4724 -0.8 -0.5 Carbamoyl-phosphate synthase small chain compare
PP_3014 -0.8 -1.4 conserved exported protein of unknown function compare
PP_0084 -0.8 -3.0 HTH-type transcriptional regulator TrpI compare
PP_3837 -0.8 -2.5 inner membrane protein of unknown function compare
PP_1552 -0.8 -1.8 putative Phage replication protein compare
PP_3672 -0.8 -2.7 conserved protein of unknown function compare
PP_1198 -0.8 -1.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5035 -0.8 -3.1 Histidine utilization repressor compare


Specific Phenotypes

For 1 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms