Experiment set19IT024 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_21; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0643 -7.0 -3.0 protein of unknown function compare
PP_0293 -6.3 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1079 -6.2 -6.1 Ornithine carbamoyltransferase compare
PP_5185 -5.2 -7.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0566 -5.1 -1.3 translation-related factor compare
PP_0422 -5.0 -5.2 Indole-3-glycerol phosphate synthase compare
PP_4199 -4.9 -1.2 putative Lipoprotein compare
PP_2306 -4.9 -1.7 conserved exported protein of unknown function compare
PP_3519 -4.8 -1.2 putative Lipoprotein compare
PP_0022 -4.8 -1.2 hypothetical protein compare
PP_0290 -4.5 -6.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0406 -4.4 -3.0 Nucleotidyltransferase family protein compare
PP_0083 -4.3 -7.7 tryptophan synthase beta chain compare
PP_2900 -4.3 -2.8 conserved protein of unknown function compare
PP_3411 -4.3 -1.5 conserved protein of unknown function compare
PP_1176 -4.0 -2.3 conserved protein of unknown function compare
PP_1654 -4.0 -2.8 cysteine synthase B compare
PP_0366 -3.9 -3.8 dethiobiotin synthetase compare
PP_4678 -3.9 -10.3 Ketol-acid reductoisomerase compare
PP_0846 -3.8 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_2402 -3.7 -2.4 putative Sensor histidine kinase compare
PP_1055 -3.7 -1.3 Type II secretion pathway protein GspN compare
PP_1322 -3.7 -1.2 putative Lipoprotein compare
PP_5348 -3.4 -6.2 Transcriptional regulator, LysR family compare
PP_0082 -3.4 -4.9 tryptophan synthase alpha chain compare
PP_3999 -3.3 -8.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1362 -3.2 -4.6 pyruvate kinase II compare
PP_5701 -3.2 -1.9 conserved protein of unknown function compare
PP_1898 -3.2 -3.1 MotA/TolQ/ExbB proton channel family protein compare
PP_5303 -3.1 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1237 -3.0 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5114 -3.0 -2.3 putative adenine methyltransferase compare
PP_5347 -3.0 -6.7 pyruvate carboxylase subunit A compare
PP_2168 -3.0 -5.7 Transaldolase compare
PP_4126 -2.9 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_1986 -2.9 -2.8 3-isopropylmalate dehydratase small subunit compare
PP_0421 -2.9 -4.8 Anthranilate phosphoribosyltransferase compare
PP_2327 -2.9 -4.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2370 -2.9 -2.6 conserved protein of unknown function compare
PP_4782 -2.9 -2.8 Phosphomethylpyrimidine kinase compare
PP_4874 -2.9 -1.4 50S ribosomal protein L9 compare
PP_1366 -2.8 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_2510 -2.8 -1.5 conserved protein of unknown function compare
PP_4902 -2.8 -2.9 Oligoribonuclease compare
PP_0959 -2.7 -2.4 phospholipid ABC transporter compare
PP_4848 -2.6 -2.2 Curved DNA-binding protein compare
PP_3312 -2.6 -1.5 putative Heat shock protein compare
PP_2336 -2.6 -2.5 aconitate hydratase 1 compare
PP_4262 -2.6 -2.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0291 -2.6 -2.0 conserved protein of unknown function compare
PP_0967 -2.5 -4.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1664 -2.5 -1.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4679 -2.4 -3.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1589 -2.4 -6.2 uridylyltransferase compare
PP_4700 -2.3 -1.6 pantothenate synthetase compare
PP_3378 -2.3 -1.7 putative 2-ketogluconokinase compare
PP_5095 -2.2 -1.1 pyrroline-5-carboxylate reductase compare
PP_4662 -2.2 -1.4 conserved protein of unknown function compare
PP_4699 -2.2 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4045 -2.2 -1.6 conserved protein of unknown function compare
PP_4994 -2.2 -3.3 conserved protein of unknown function compare
PP_2214 -2.2 -2.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5346 -2.2 -3.6 pyruvate carboxylase subunit B compare
PP_5097 -2.2 -6.0 homoserine O-acetyltransferase compare
PP_5098 -2.1 -4.3 methionine biosynthesis protein MetW compare
PP_5128 -2.1 -3.9 Dihydroxy-acid dehydratase compare
PP_4124 -2.1 -5.0 NADH-quinone oxidoreductase subunit G compare
PP_4479 -2.1 -3.3 arginine N-succinyltransferase, subunit beta compare
PP_3738 -2.1 -2.2 putative Transcriptional regulator VanR compare
PP_1995 -2.0 -3.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1231 -2.0 -3.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4317 -2.0 -1.9 conserved protein of unknown function compare
PP_5030 -2.0 -3.4 Imidazolonepropionase compare
PP_0289 -2.0 -3.6 Imidazoleglycerol-phosphate dehydratase compare
PP_3239 -2.0 -2.4 putative cointegrate resolution protein T Tn4652 compare
PP_4285 -1.9 -2.6 5-hydroxyisourate hydrolase compare
PP_3434 -1.9 -1.4 conserved protein of unknown function compare
PP_0292 -1.9 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0153 -1.9 -1.3 hypothetical protein compare
PP_4696 -1.9 -3.3 Nitrogen regulation protein NR(I) compare
PP_2371 -1.9 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1022 -1.9 -3.8 glucose 6-phosphate-1-dehydrogenase compare
PP_2999 -1.9 -1.2 Glyoxalase family protein compare
PP_2001 -1.9 -4.4 O-succinylhomoserine sulfhydrylase compare
PP_1675 -1.9 -3.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2681 -1.9 -1.4 coenzyme PQQ synthesis protein D compare
PP_1233 -1.9 -2.0 sulfurtransferase compare
PP_2060 -1.9 -1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1025 -1.9 -6.0 2-isopropylmalate synthase compare
PP_2088 -1.8 -1.6 RNA polymerase sigma factor SigX compare
PP_1783 -1.8 -1.2 dTDP-glucose pyrophosphorylase compare
PP_0393 -1.8 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2328 -1.8 -3.7 Phosphoadenosine phosphosulfate reductase compare
PP_4680 -1.8 -6.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1764 -1.8 -2.5 Phosphoglycolate phosphatase 2 compare
PP_4131 -1.8 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_4984 -1.8 -4.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2378 -1.8 -2.2 Fe/S biogenesis protein NfuA compare
PP_3227 -1.8 -1.6 Transcriptional regulator, LysR family compare
PP_0362 -1.8 -5.0 Biotin synthase compare
PP_0966 -1.8 -4.3 Histidinol dehydrogenase compare
PP_2581 -1.8 -1.3 conserved protein of unknown function compare
PP_0420 -1.8 -4.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0184 -1.8 -2.8 Argininosuccinate lyase compare
PP_0725 -1.8 -3.0 conserved hypothetical TPR repeat protein compare
PP_3840 -1.7 -1.2 conserved protein of unknown function compare
PP_5015 -1.7 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1985 -1.7 -2.5 3-isopropylmalate dehydratase large subunit compare
PP_2650 -1.7 -1.9 putative 4-hydroxybutyrate dehydrogenase compare
PP_1994 -1.7 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_2750 -1.7 -2.2 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3823 -1.7 -2.5 Cytochrome c-type protein compare
PP_1673 -1.7 -2.9 cobyrinate a,c-diamide synthase compare
PP_3481 -1.7 -1.3 conserved exported protein of unknown function compare
PP_0364 -1.7 -3.5 pimeloyl-[acp] methyl ester esterase compare
PP_2820 -1.7 -2.5 HTH-type transcriptional regulator nfxB compare
PP_2171 -1.7 -1.6 Transporter, LysE family compare
PP_2631 -1.7 -1.2 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2373 -1.7 -1.9 conserved protein of unknown function compare
PP_3762 -1.6 -2.1 Response regulator compare
PP_1128 -1.6 -2.3 OmpA family protein compare
PP_4768 -1.6 -1.8 Exonuclease compare
PP_4129 -1.6 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5609 -1.6 -1.4 conserved protein of unknown function compare
PP_2232 -1.6 -2.1 XRE family transcriptional regulator compare
PP_3164 -1.6 -1.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_3336 -1.6 -1.9 conserved protein of unknown function compare
PP_3511 -1.6 -3.2 Branched-chain-amino-acid aminotransferase compare
PP_1988 -1.5 -4.0 3-isopropylmalate dehydrogenase compare
PP_1862 -1.5 -2.8 conserved membrane protein of unknown function compare
PP_0407 -1.5 -2.4 DnaJ-like protein DjlA compare
PP_1088 -1.5 -3.8 Argininosuccinate synthase compare
PP_3234 -1.5 -2.1 Heat shock protein, HSP20 family compare
PP_5702 -1.5 -1.4 conserved protein of unknown function compare
PP_0195 -1.5 -1.4 conserved protein of unknown function compare
PP_2658 -1.5 -2.4 phosphate ABC transporter compare
PP_1466 -1.5 -1.2 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_1381 -1.5 -0.9 4-carboxymuconolactone decarboxylase compare
PP_5552 -1.5 -1.7 conserved protein of unknown function compare
PP_1303 -1.5 -2.4 Sulfate adenylyltransferase subunit 2 compare
PP_4392 -1.5 -2.9 chemotaxis protein methyltransferase compare
PP_2880 -1.5 -1.3 Transcriptional regulator, TetR family compare
PP_1124 -1.5 -1.6 conserved membrane protein of unknown function compare
PP_1697 -1.4 -1.4 transcriptional regulator, GntR family compare
PP_0719 -1.4 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0833 -1.4 -1.0 queuine tRNA-ribosyltransferase compare
PP_4238 -1.4 -0.9 conserved protein of unknown function compare
PP_0220 -1.4 -1.9 methionine import ATP-binding protein metN2 compare
PP_5221 -1.4 -1.8 conserved protein of unknown function, UPF0178 family compare
PP_0504 -1.4 -2.8 Outer membrane protein OprG compare
PP_5350 -1.4 -1.8 Transcriptional regulator, RpiR family compare
PP_0405 -1.4 -4.5 conserved protein of unknown function compare
PP_0417 -1.4 -5.8 Anthranilate synthase component 1 compare
PP_4102 -1.4 -2.2 conserved protein of unknown function compare
PP_2144 -1.4 -2.5 Transcriptional regulator, TetR family compare
PP_5155 -1.3 -2.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5688 -1.3 -2.3 putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain compare
PP_1770 -1.3 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5058 -1.3 -2.5 Carboxy-terminal-processing protease compare
PP_4916 -1.3 -2.3 putative esterase compare
PP_3241 -1.3 -1.0 conserved exported protein of unknown function compare
PP_1808 -1.3 -1.8 glucose-6-phosphate isomerase compare
PP_3105 -1.3 -1.0 conserved membrane protein of unknown function compare
PP_3904 -1.3 -2.2 conserved protein of unknown function compare
PP_5217 -1.3 -4.3 Polyphosphate kinase compare
PP_3506 -1.3 -1.6 Magnesium chelatase, subunit ChII compare
PP_5329 -1.3 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0365 -1.3 -3.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1536 -1.3 -1.7 conserved protein of unknown function compare
PP_1681 -1.3 -3.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_3417 -1.3 -1.7 D-gluconate transporter compare
PP_1256 -1.2 -2.7 putative alpha-ketoglutarate semialdehyde dehydrogenase compare
PP_4830 -1.2 -2.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_5491 -1.2 -1.9 conserved protein of unknown function with SEC-C motif domain compare
PP_2773 -1.2 -1.3 conserved protein of unknown function compare
PP_4785 -1.2 -4.0 conserved exported protein of unknown function compare
PP_2943 -1.2 -2.7 putative Cytochrome c551 peroxidase compare
PP_5168 -1.2 -1.4 sulfate/thiosulfate import ATP-binding protein compare
PP_4926 -1.2 -3.2 HlyD family secretion protein compare
PP_2575 -1.2 -0.9 conserved exported protein of unknown function compare
PP_4001 -1.2 -3.3 Putative fluoride ion transporter CrcB compare
PP_4480 -1.2 -3.6 arginine N-succinyltransferase, subunit alpha compare
PP_4890 -1.2 -2.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_1656 -1.2 -5.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_5289 -1.2 -1.2 Acetylglutamate kinase compare
PP_1207 -1.2 -1.6 conserved protein of unknown function compare
PP_2972 -1.2 -1.0 conserved protein of unknown function compare
PP_0787 -1.2 -1.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3765 -1.1 -1.4 H-NS family protein MvaT compare
PP_4329 -1.1 -1.0 FlhB domain protein compare
PP_4669 -1.1 -1.9 OmpA family protein compare
PP_2388 -1.1 -1.1 Transporter, LysE family compare
PP_3806 -1.1 -1.4 Hydrolase, isochorismatase family compare
PP_0261 -1.1 -1.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1553 -1.1 -0.9 conserved protein of unknown function compare
PP_2403 -1.1 -1.0 Chemotaxis protein CheY compare
PP_2472 -1.1 -1.7 putative transcriptional regulator, MerR family compare
PP_2409 -1.1 -1.6 cobalt-zinc-cadmium resistance protein compare
PP_2172 -1.1 -2.2 conserved exported protein of unknown function compare
PP_4895 -1.1 -1.9 tRNA dimethylallyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms