Experiment set19IT023 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27865 -4.3 -4.7 LysR family transcriptional regulator compare
PS417_06375 -4.0 -1.2 deoxycytidine triphosphate deaminase compare
PS417_06680 -4.0 -9.2 nuclease PIN compare
PS417_04380 -3.8 -1.9 ABC transporter permease compare
PS417_27245 -3.7 -6.1 aminotransferase DegT compare
PS417_22450 -3.6 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_21430 -3.5 -2.6 3-oxoacyl-ACP synthase compare
PS417_16490 -3.2 -1.9 cell division protein FtsK compare
PS417_12855 -2.9 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27195 -2.9 -1.7 N-acetylglutamate synthase compare
PS417_24745 -2.8 -4.6 gamma-glutamyl phosphate reductase compare
PS417_23770 -2.8 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_05975 -2.8 -1.2 chemotaxis protein CheW compare
PS417_08125 -2.8 -0.8 prephenate dehydratase compare
PS417_04650 -2.7 -1.1 D-alanine--D-alanine ligase compare
PS417_00180 -2.7 -3.5 tryptophan synthase subunit alpha compare
PS417_26730 -2.7 -1.1 pyrroline-5-carboxylate reductase compare
PS417_01560 -2.6 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_27795 -2.6 -1.1 orotate phosphoribosyltransferase compare
PS417_20985 -2.6 -2.8 porin compare
PS417_23810 -2.6 -10.6 acetolactate synthase 3 catalytic subunit compare
PS417_05365 -2.5 -2.4 FAD-binding protein compare
PS417_19690 -2.5 -6.1 histidine kinase compare
PS417_19955 -2.5 -2.4 hypothetical protein compare
PS417_02415 -2.5 -3.6 phosphoserine phosphatase compare
PS417_21575 -2.4 -5.8 chemotaxis protein compare
PS417_03560 -2.4 -2.3 GTP-binding protein compare
PS417_27800 -2.4 -3.2 exodeoxyribonuclease III compare
PS417_05635 -2.3 -5.6 membrane protein compare
PS417_27870 -2.3 -3.7 ATP-dependent DNA helicase RecG compare
PS417_01580 -2.3 -1.9 imidazole glycerol phosphate synthase compare
PS417_19650 -2.3 -5.1 chemotaxis protein CheW compare
PS417_18310 -2.3 -2.1 hypothetical protein compare
PS417_02975 -2.3 -2.9 3-dehydroquinate dehydratase compare
PS417_01855 -2.2 -3.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_02000 -2.1 -10.3 glutamate synthase compare
PS417_08130 -2.1 -2.4 aspartate aminotransferase compare
PS417_23775 -2.0 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_21565 -2.0 -6.7 flagellar basal body rod protein FlgC compare
PS417_19675 -2.0 -4.2 chemotaxis protein CheY compare
PS417_08135 -2.0 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02805 -2.0 -1.8 urease subunit gamma compare
PS417_02555 -2.0 -11.6 exoribonuclease R compare
PS417_19840 -2.0 -9.7 flagellar cap protein FliD compare
PS417_01640 -1.9 -5.1 histidine kinase compare
PS417_19850 -1.9 -9.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_04420 -1.9 -7.9 histidinol dehydrogenase compare
PS417_19665 -1.9 -3.2 flagellar motor protein MotD compare
PS417_19860 -1.9 -11.1 flagellar hook protein FlgL compare
PS417_02005 -1.9 -8.3 glutamate synthase compare
PS417_07640 -1.8 -2.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_19880 -1.8 -6.7 flagellar basal body L-ring protein compare
PS417_21570 -1.8 -5.3 flagellar basal body rod protein FlgB compare
PS417_04365 -1.8 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27425 -1.8 -7.0 exopolyphosphatase compare
PS417_08730 -1.8 -1.5 cytochrome C compare
PS417_24705 -1.7 -2.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_23805 -1.7 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_01605 -1.7 -1.5 phosphoglycerate mutase compare
PS417_21480 -1.7 -1.0 23S rRNA pseudouridylate synthase compare
PS417_22570 -1.7 -1.0 H-NS histone compare
PS417_21595 -1.7 -4.8 flagellar biosynthesis protein FlgN compare
PS417_20705 -1.7 -2.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_23545 -1.7 -2.5 gamma-glutamyl kinase compare
PS417_24155 -1.6 -1.6 ATP-binding protein compare
PS417_12870 -1.6 -1.4 enoyl-CoA hydratase compare
PS417_05815 -1.6 -4.0 recombinase RecA compare
PS417_03380 -1.6 -1.0 hypothetical protein compare
PS417_18560 -1.6 -6.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_10675 -1.6 -1.1 TetR family transcriptional regulator compare
PS417_02720 -1.5 -1.0 TetR family transcriptional regulator compare
PS417_04375 -1.5 -2.1 ABC transporter ATP-binding protein compare
PS417_19765 -1.5 -5.4 flagellar hook-length control protein compare
PS417_01920 -1.5 -1.0 ATP-dependent protease subunit HslV compare
PS417_27135 -1.5 -0.9 glutamine synthetase compare
PS417_27040 -1.5 -2.4 3-phosphoglycerate dehydrogenase compare
PS417_19695 -1.5 -5.6 flagellar biosynthesis sigma factor compare
PS417_07565 -1.5 -2.0 hypothetical protein compare
PS417_24500 -1.5 -2.9 DEAD/DEAH box helicase compare
PS417_08540 -1.4 -2.2 RNA helicase compare
PS417_23025 -1.4 -4.8 murein transglycosylase compare
PS417_23915 -1.4 -3.3 pantoate--beta-alanine ligase compare
PS417_19755 -1.4 -2.0 flagellar motor switch protein FliM compare
PS417_16555 -1.4 -1.6 cupin compare
PS417_04585 -1.4 -1.6 hypothetical protein compare
PS417_19805 -1.4 -2.3 flagellar M-ring protein FliF compare
PS417_19865 -1.4 -6.7 flagellar hook protein FlgK compare
PS417_25725 -1.4 -7.6 anthranilate synthase component I compare
PS417_04595 -1.4 -2.1 cell division protein MraZ compare
PS417_15820 -1.4 -2.8 universal stress protein UspA compare
PS417_19835 -1.4 -1.6 flagellar biosynthesis protein FliS compare
PS417_06200 -1.4 -5.4 protein-PII uridylyltransferase compare
PS417_22210 -1.4 -2.0 AraC family transcriptional regulator compare
PS417_20785 -1.4 -3.2 transcriptional regulator compare
PS417_01565 -1.4 -4.3 imidazole glycerol phosphate synthase compare
PS417_28070 -1.3 -4.7 phosphate ABC transporter ATP-binding protein compare
PS417_19350 -1.3 -3.8 GTP cyclohydrolase compare
PS417_18025 -1.3 -2.9 cytochrome C compare
PS417_21585 -1.3 -7.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19725 -1.3 -3.5 flagellar biosynthesis protein FlhB compare
PS417_21555 -1.3 -6.1 flagellar hook protein FlgE compare
PS417_25175 -1.3 -2.7 hypothetical protein compare
PS417_02510 -1.3 -2.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25720 -1.3 -4.5 anthranilate synthase component II compare
PS417_15110 -1.3 -5.9 protein BatD compare
PS417_19785 -1.3 -4.0 flagellar biogenesis protein compare
PS417_19605 -1.3 -1.3 hypothetical protein compare
PS417_02475 -1.3 -2.2 N-acetylmuramoyl-L-alanine amidase compare
PS417_19655 -1.3 -3.7 chemotaxis protein CheW compare
PS417_16465 -1.3 -5.9 sirohydrochlorin ferrochelatase compare
PS417_18530 -1.3 -5.5 O-succinylhomoserine sulfhydrylase compare
PS417_19745 -1.3 -8.3 flagellar assembly protein FliO compare
PS417_03300 -1.3 -2.5 alanine acetyltransferase compare
PS417_19730 -1.3 -2.4 flagellar biosynthesis protein FliR compare
PS417_18540 -1.3 -2.3 colicin V production CvpA compare
PS417_03515 -1.3 -1.6 type III secretion protein compare
PS417_26985 -1.3 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19710 -1.2 -7.6 flagellar biosynthesis protein FlhA compare
PS417_09470 -1.2 -0.6 hypothetical protein compare
PS417_19800 -1.2 -2.6 flagellar motor switch protein FliG compare
PS417_00045 -1.2 -1.7 glycerol acyltransferase compare
PS417_24620 -1.2 -2.0 hypothetical protein compare
PS417_27835 -1.2 -7.0 endoribonuclease compare
PS417_12355 -1.2 -1.7 magnesium chelatase compare
PS417_26725 -1.2 -2.8 hypothetical protein compare
PS417_18595 -1.2 -3.1 3-isopropylmalate dehydratase compare
PS417_19795 -1.2 -7.4 flagellar assembly protein FliH compare
PS417_09695 -1.2 -1.1 hydrolase compare
PS417_00185 -1.2 -2.3 tryptophan synthase subunit beta compare
PS417_21320 -1.2 -3.9 transcriptional regulator compare
PS417_20880 -1.2 -1.4 GntR family transcriptional regulator compare
PS417_07165 -1.2 -3.6 dihydrodipicolinate synthase compare
PS417_00535 -1.2 -1.5 Holliday junction resolvase compare
PS417_00370 -1.2 -1.0 hypothetical protein compare
PS417_15095 -1.2 -1.6 hypothetical protein compare
PS417_20715 -1.2 -1.7 cytochrome Cbb3 compare
PS417_12710 -1.2 -2.6 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) compare
PS417_28220 -1.2 -2.1 LysR family transcriptional regulator compare
PS417_26370 -1.2 -1.6 RNA helicase compare
PS417_06500 -1.2 -1.1 hypothetical protein compare
PS417_26365 -1.2 -2.9 EmrB/QacA subfamily drug resistance transporter compare
PS417_07170 -1.1 -3.2 hypothetical protein compare
PS417_19790 -1.1 -2.3 ATP synthase compare
PS417_12310 -1.1 -4.9 methionine synthase compare
PS417_09235 -1.1 -0.9 molecular chaperone compare
PS417_19660 -1.1 -3.1 cobalamin biosynthesis protein CobQ compare
PS417_21560 -1.1 -3.4 flagellar basal body rod modification protein FlgD compare
PS417_18600 -1.1 -1.5 isopropylmalate isomerase compare
PS417_19825 -1.1 -9.0 ATPase AAA compare
PS417_24710 -1.1 -3.6 lipoprotein compare
PS417_12290 -1.1 -3.5 sulfite reductase compare
PS417_15090 -1.1 -1.9 hypothetical protein compare
PS417_21125 -1.1 -3.7 phosphoadenosine phosphosulfate reductase compare
PS417_01570 -1.1 -2.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_25710 -1.1 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_15035 -1.1 -1.3 alkylhydroperoxidase compare
PS417_19870 -1.1 -2.3 flagellar rod assembly protein FlgJ compare
PS417_04415 -1.1 -3.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_15875 -1.1 -1.6 LuxR family transcriptional regulator compare
PS417_23800 -1.1 -4.7 ketol-acid reductoisomerase compare
PS417_15135 -1.1 -1.4 hypothetical protein compare
PS417_04385 -1.1 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_01635 -1.1 -3.4 nitrogen regulation protein NR(I) compare
PS417_23900 -1.1 -3.8 poly(A) polymerase compare
PS417_02225 -1.1 -1.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_20160 -1.1 -2.3 cysteine synthase compare
PS417_01955 -1.1 -4.3 peptidase compare
PS417_23110 -1.1 -4.4 2-isopropylmalate synthase compare
PS417_04390 -1.1 -2.3 toluene tolerance protein compare
PS417_21390 -1.1 -3.3 hypothetical protein compare
PS417_01575 -1.0 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26890 -1.0 -3.6 dihydroxy-acid dehydratase compare
PS417_24525 -1.0 -1.5 nuclease compare
PS417_02035 -1.0 -2.4 3-ketoacyl-ACP reductase compare
PS417_12595 -1.0 -1.3 transcriptional regulator compare
PS417_22445 -1.0 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_20665 -1.0 -4.1 hypothetical protein compare
PS417_22565 -1.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_28080 -1.0 -6.8 phosphate ABC transporter permease compare
PS417_24585 -1.0 -5.3 AMP nucleosidase compare
PS417_12805 -1.0 -6.1 glycogen branching protein compare
PS417_22115 -1.0 -1.5 transcriptional regulator compare
PS417_23380 -1.0 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_07710 -1.0 -2.8 membrane protein compare
PS417_28510 -1.0 -3.2 chromosome partitioning protein compare
PS417_28230 -1.0 -1.5 transcriptional regulator compare
PS417_05710 -1.0 -2.2 hypothetical protein compare
PS417_22690 -1.0 -1.5 phosphogluconate dehydratase compare
PS417_09440 -1.0 -1.2 MerR family transcriptional regulator compare
PS417_27180 -1.0 -1.2 peroxidase compare
PS417_03100 -1.0 -0.8 pilus assembly protein compare
PS417_21510 -1.0 -0.9 histidine kinase compare
PS417_00075 -1.0 -1.2 hypothetical protein compare
PS417_22050 -1.0 -2.7 ribonuclease BN compare
PS417_16195 -1.0 -0.9 AraC family transcriptional regulator compare
PS417_27815 -1.0 -0.8 hypothetical protein compare
PS417_10955 -1.0 -1.2 porin compare
PS417_11770 -1.0 -1.4 pyruvate dehydrogenase compare
PS417_04185 -1.0 -1.3 hypothetical protein compare
PS417_18585 -1.0 -2.8 3-isopropylmalate dehydrogenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments