Experiment set19IT022 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_21; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.3 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1938 -5.0 -2.0 conserved protein of unknown function compare
PP_0630 -4.9 -1.4 DNA gyrase inhibitor YacG compare
PP_0292 -4.6 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4593 -4.4 -1.7 conserved protein of unknown function compare
PP_0082 -4.3 -7.6 tryptophan synthase alpha chain compare
PP_1528 -4.2 -1.7 conserved protein of unknown function compare
PP_4679 -4.2 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -4.1 -8.8 Transaldolase compare
PP_0001 -4.1 -2.2 probable chromosome-partitioning protein compare
PP_4678 -3.9 -9.5 Ketol-acid reductoisomerase compare
PP_1079 -3.9 -4.8 Ornithine carbamoyltransferase compare
PP_0846 -3.8 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_5185 -3.5 -5.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0422 -3.4 -4.6 Indole-3-glycerol phosphate synthase compare
PP_2371 -3.4 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5128 -3.3 -6.1 Dihydroxy-acid dehydratase compare
PP_4680 -3.2 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -3.2 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_5346 -3.1 -5.6 pyruvate carboxylase subunit B compare
PP_0967 -3.1 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5359 -3.1 -1.9 CobW/P47K family protein compare
PP_1912 -3.0 -5.4 Phosphate acyltransferase compare
PP_3511 -3.0 -5.1 Branched-chain-amino-acid aminotransferase compare
PP_0083 -3.0 -5.4 tryptophan synthase beta chain compare
PP_2088 -2.9 -3.0 RNA polymerase sigma factor SigX compare
PP_0291 -2.9 -2.5 conserved protein of unknown function compare
PP_2337 -2.9 -3.4 aconitate isomerase compare
PP_2575 -2.8 -1.9 conserved exported protein of unknown function compare
PP_1055 -2.8 -1.6 Type II secretion pathway protein GspN compare
PP_0184 -2.8 -5.3 Argininosuccinate lyase compare
PP_4696 -2.8 -4.8 Nitrogen regulation protein NR(I) compare
PP_4379 -2.6 -4.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1988 -2.6 -4.3 3-isopropylmalate dehydrogenase compare
PP_1088 -2.6 -7.4 Argininosuccinate synthase compare
PP_5267 -2.6 -2.1 putative cytochrome c5 compare
PP_2899 -2.6 -1.6 conserved exported protein of unknown function compare
PP_1654 -2.6 -3.6 cysteine synthase B compare
PP_1664 -2.6 -1.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_5093 -2.5 -1.4 twitching motility protein compare
PP_0417 -2.5 -9.2 Anthranilate synthase component 1 compare
PP_2328 -2.5 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_2378 -2.4 -3.2 Fe/S biogenesis protein NfuA compare
PP_0290 -2.4 -4.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4964 -2.4 -4.2 D-erythrose 4-phosphate dehydrogenase compare
PP_4700 -2.3 -1.6 pantothenate synthetase compare
PP_1164 -2.3 -2.2 Transcriptional regulator, LysR family compare
PP_0685 -2.3 -1.6 conserved protein of unknown function compare
PP_0420 -2.3 -5.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2341 -2.3 -1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2720 -2.3 -1.4 conserved protein of unknown function compare
PP_5095 -2.3 -1.2 pyrroline-5-carboxylate reductase compare
PP_5007 -2.2 -2.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1999 -2.2 -1.5 membrane protein required for colicin V production compare
PP_4699 -2.2 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5350 -2.1 -3.2 Transcriptional regulator, RpiR family compare
PP_5028 -2.1 -4.1 proline iminopeptidase compare
PP_5303 -2.1 -2.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2402 -2.1 -2.1 putative Sensor histidine kinase compare
PP_4925 -2.1 -2.6 conserved protein of unknown function compare
PP_1995 -2.1 -3.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1025 -2.1 -7.0 2-isopropylmalate synthase compare
PP_3105 -2.0 -1.2 conserved membrane protein of unknown function compare
PP_4832 -2.0 -2.3 Precorrin-6x reductase compare
PP_0232 -2.0 -1.2 ATP-binding taurine transporter subunit compare
PP_5001 -2.0 -2.5 protease HslVU, ATPase component compare
PP_5347 -2.0 -4.7 pyruvate carboxylase subunit A compare
PP_5348 -1.9 -4.6 Transcriptional regulator, LysR family compare
PP_5575 -1.9 -1.5 conserved protein of unknown function compare
PP_0065 -1.9 -2.6 NAD-binding component of TrK potassium transporter compare
PP_4994 -1.9 -3.5 conserved protein of unknown function compare
PP_3506 -1.9 -2.4 Magnesium chelatase, subunit ChII compare
PP_5519 -1.9 -1.3 conserved protein of unknown function of phage origin compare
PP_2442 -1.9 -1.5 conserved protein of unknown function, DUF480 family compare
PP_4213 -1.9 -2.2 putative dipeptidase compare
PP_3190 -1.9 -1.9 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_0848 -1.9 -1.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3411 -1.8 -1.0 conserved protein of unknown function compare
PP_1045 -1.8 -1.4 Type II secretion pathway protein XcpP compare
PP_0393 -1.8 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3999 -1.8 -4.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5528 -1.8 -1.3 conserved protein of unknown function compare
PP_5027 -1.8 -1.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4890 -1.8 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_2030 -1.8 -2.7 conserved protein of unknown function compare
PP_2121 -1.8 -1.6 putative Lipoprotein compare
PP_2001 -1.8 -3.8 O-succinylhomoserine sulfhydrylase compare
PP_4133 -1.8 -2.0 Transcriptional regulator-related protein compare
PP_0949 -1.8 -3.8 putative ATP-binding protein UPF0042 compare
PP_0365 -1.8 -3.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1679 -1.8 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4258 -1.7 -3.9 cytochrome c oxidase subunit, cbb3-type compare
PP_0966 -1.7 -5.0 Histidinol dehydrogenase compare
PP_2747 -1.7 -1.3 conserved protein of unknown function compare
PP_5621 -1.7 -1.9 protein of unknown function compare
PP_4814 -1.7 -2.3 ATP-dependent protease La domain protein compare
PP_5701 -1.7 -1.7 conserved protein of unknown function compare
PP_4480 -1.7 -4.7 arginine N-succinyltransferase, subunit alpha compare
PP_5097 -1.7 -5.2 homoserine O-acetyltransferase compare
PP_1218 -1.7 -2.9 putative acyl-CoA thioesterase compare
PP_1672 -1.6 -3.3 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4131 -1.6 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_1898 -1.6 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_5216 -1.6 -1.1 exopolyphosphatase compare
PP_0153 -1.6 -0.9 hypothetical protein compare
PP_2302 -1.6 -3.5 DNA-binding, ATP-dependent protease compare
PP_2922 -1.6 -2.3 Urea amidolyase-related protein compare
PP_0957 -1.6 -1.5 D-arabinose 5-phosphate isomerase compare
PP_0513 -1.6 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4214 -1.6 -2.4 pyoverdine biosynthesis related protein compare
PP_2643 -1.6 -2.4 aromatic acid chemoreceptor compare
PP_4098 -1.6 -1.2 UvrABC system protein C compare
PP_1022 -1.6 -3.1 glucose 6-phosphate-1-dehydrogenase compare
PP_4785 -1.6 -3.9 conserved exported protein of unknown function compare
PP_3850 -1.5 -2.5 conserved protein of unknown function compare
PP_4828 -1.5 -0.9 Precorrin-8X methylmutase compare
PP_2029 -1.5 -1.3 von Willebrand factor type A domain protein compare
PP_3508 -1.5 -2.4 Protein CobW compare
PP_2370 -1.5 -1.9 conserved protein of unknown function compare
PP_0833 -1.5 -1.0 queuine tRNA-ribosyltransferase compare
PP_5098 -1.5 -2.9 methionine biosynthesis protein MetW compare
PP_1553 -1.5 -1.2 conserved protein of unknown function compare
PP_3637 -1.5 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1001 -1.5 -2.5 arginine deiminase compare
PP_0888 -1.5 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_4984 -1.4 -4.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2718 -1.4 -0.8 arsenic resistance transcriptional regulator compare
PP_5202 -1.4 -2.0 putative cell division protein compare
PP_3232 -1.4 -2.1 Acetyltransferase, GNAT family compare
PP_4254 -1.4 -1.2 conserved protein of unknown function compare
PP_0421 -1.4 -3.7 Anthranilate phosphoribosyltransferase compare
PP_0125 -1.4 -1.9 putative cytochrome c-type protein compare
PP_1322 -1.4 -1.4 putative Lipoprotein compare
PP_3318 -1.4 -1.5 conserved protein of unknown function compare
PP_3378 -1.4 -1.7 putative 2-ketogluconokinase compare
PP_5329 -1.4 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1860 -1.4 -3.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_1208 -1.4 -1.5 conserved protein of unknown function, SlyX family compare
PP_4271 -1.4 -0.8 conserved protein of unknown function compare
PP_1676 -1.3 -3.1 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1656 -1.3 -5.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_5714 -1.3 -2.5 conserved protein of unknown function compare
PP_0363 -1.3 -4.0 8-amino-7-oxononanoate synthase compare
PP_1692 -1.3 -1.4 conserved protein of unknown function compare
PP_0516 -1.3 -2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_2336 -1.3 -2.9 aconitate hydratase 1 compare
PP_3228 -1.3 -2.9 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_0108 -1.3 -2.2 conserved protein of unknown function compare
PP_3469 -1.3 -2.7 conserved protein of unknown function compare
PP_4563 -1.3 -3.5 conserved protein of unknown function compare
PP_5155 -1.3 -2.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0566 -1.3 -0.9 translation-related factor compare
PP_0962 -1.3 -1.3 toluene-tolerance protein compare
PP_5038 -1.3 -2.0 conserved lipoprotein of unknown function compare
PP_2214 -1.3 -1.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1824 -1.3 -1.3 Smr domain protein compare
PP_3074 -1.3 -2.5 D-beta-hydroxybutyrate permease compare
PP_0362 -1.3 -4.4 Biotin synthase compare
PP_3332 -1.3 -1.9 putative cytochrome c-type protein compare
PP_1571 -1.3 -1.3 conserved protein of unknown function compare
PP_3449 -1.3 -1.3 conserved exported protein of unknown function compare
PP_1237 -1.3 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3286 -1.2 -2.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5201 -1.2 -2.0 conserved protein of unknown function, UPF0149 family compare
PP_1569 -1.2 -2.8 conserved protein of unknown function compare
PP_2504 -1.2 -1.4 putative tautomerase K2 compare
PP_4880 -1.2 -5.0 exoribonuclease R compare
PP_1598 -1.2 -1.7 regulatory intramembrane protein RIP zinc protease compare
PP_0787 -1.2 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2462 -1.2 -1.6 conserved protein of unknown function compare
PP_5640 -1.2 -1.4 conserved protein of unknown function compare
PP_2441 -1.2 -2.0 conserved protein of unknown function compare
PP_t29 -1.2 -1.3 tRNA-Ala compare
PP_3883 -1.2 -1.3 putative Phage holin compare
PP_3480 -1.2 -2.2 conserved protein of unknown function compare
PP_1589 -1.2 -3.2 uridylyltransferase compare
PP_1986 -1.2 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_3098 -1.2 -0.8 conserved protein of unknown function compare
PP_3204 -1.2 -2.4 conserved protein of unknown function compare
PP_1054 -1.2 -0.8 Type II secretion pathway protein XcpZ compare
PP_4129 -1.2 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4481 -1.2 -3.5 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5274 -1.2 -1.1 conserved protein of unknown function compare
PP_3043 -1.2 -0.7 conserved protein of unknown function compare
PP_t12 -1.1 -0.8 tRNA-Thr compare
PP_4707 -1.1 -1.3 OsmY-related protein compare
PP_5666 -1.1 -2.0 putative microcin B17-like processing protein, McbB family compare
PP_0040 -1.1 -1.7 hypothetical protein compare
PP_3492 -1.1 -2.7 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PP_3924 -1.1 -1.5 conserved protein of unknown function compare
PP_4977 -1.1 -3.7 5,10-methylenetetrahydrofolate reductase compare
PP_3519 -1.1 -0.8 putative Lipoprotein compare
PP_1845 -1.1 -1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_3614 -1.1 -1.7 conserved membrane protein of unknown function compare
PP_1673 -1.1 -1.8 cobyrinate a,c-diamide synthase compare
PP_5598 -1.1 -0.9 conserved protein of unknown function compare
PP_2784 -1.1 -1.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2107 -1.1 -1.4 conserved protein of unknown function compare
PP_4534 -1.1 -2.3 conserved protein of unknown function compare
PP_5048 -1.1 -2.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms