Experiment set19IT021 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27865 -4.7 -3.6 LysR family transcriptional regulator compare
PS417_05975 -4.5 -1.4 chemotaxis protein CheW compare
PS417_23995 -4.1 -1.3 preprotein translocase subunit SecG compare
PS417_06375 -4.0 -1.3 deoxycytidine triphosphate deaminase compare
PS417_01915 -3.9 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20985 -3.9 -2.7 porin compare
PS417_06680 -3.8 -9.2 nuclease PIN compare
PS417_22990 -3.7 -2.6 iron dicitrate transport regulator FecR compare
PS417_24745 -3.7 -5.0 gamma-glutamyl phosphate reductase compare
PS417_08090 -2.8 -1.2 3-oxoacyl-ACP reductase compare
PS417_22565 -2.8 -1.3 formyltetrahydrofolate deformylase compare
PS417_12855 -2.8 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23810 -2.7 -9.8 acetolactate synthase 3 catalytic subunit compare
PS417_08125 -2.7 -0.8 prephenate dehydratase compare
PS417_23770 -2.7 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_22445 -2.7 -3.5 ATP-dependent DNA helicase RuvB compare
PS417_19650 -2.6 -5.6 chemotaxis protein CheW compare
PS417_08135 -2.6 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03260 -2.5 -1.5 5S ribosomal RNA compare
PS417_00180 -2.5 -2.2 tryptophan synthase subunit alpha compare
PS417_26730 -2.5 -1.1 pyrroline-5-carboxylate reductase compare
PS417_24705 -2.5 -2.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_27300 -2.4 -1.1 cell division protein ZapA compare
PS417_02280 -2.4 -2.5 GlcNAc-PI de-N-acetylase compare
PS417_27795 -2.4 -1.1 orotate phosphoribosyltransferase compare
PS417_22795 -2.3 -2.0 exclusion suppressor FxsA compare
PS417_04375 -2.3 -2.7 ABC transporter ATP-binding protein compare
PS417_24585 -2.3 -9.6 AMP nucleosidase compare
PS417_20785 -2.2 -4.7 transcriptional regulator compare
PS417_19675 -2.2 -4.6 chemotaxis protein CheY compare
PS417_19690 -2.2 -7.1 histidine kinase compare
PS417_25390 -2.1 -5.5 MFS transporter compare
PS417_07640 -2.1 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01580 -2.1 -1.9 imidazole glycerol phosphate synthase compare
PS417_01850 -2.1 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21575 -2.0 -6.1 chemotaxis protein compare
PS417_08130 -2.0 -2.5 aspartate aminotransferase compare
PS417_02415 -2.0 -3.0 phosphoserine phosphatase compare
PS417_27040 -2.0 -2.7 3-phosphoglycerate dehydrogenase compare
PS417_21480 -1.9 -1.7 23S rRNA pseudouridylate synthase compare
PS417_19655 -1.9 -4.4 chemotaxis protein CheW compare
PS417_00045 -1.9 -2.1 glycerol acyltransferase compare
PS417_19835 -1.9 -1.9 flagellar biosynthesis protein FliS compare
PS417_02555 -1.8 -10.6 exoribonuclease R compare
PS417_00175 -1.8 -1.3 CigR compare
PS417_04585 -1.8 -2.0 hypothetical protein compare
PS417_04420 -1.8 -8.5 histidinol dehydrogenase compare
PS417_18600 -1.8 -2.7 isopropylmalate isomerase compare
PS417_23805 -1.8 -4.1 acetolactate synthase 3 regulatory subunit compare
PS417_27835 -1.8 -5.6 endoribonuclease compare
PS417_16005 -1.8 -3.4 ATPase compare
PS417_27425 -1.8 -6.2 exopolyphosphatase compare
PS417_23025 -1.8 -5.1 murein transglycosylase compare
PS417_04650 -1.8 -1.1 D-alanine--D-alanine ligase compare
PS417_26605 -1.7 -1.3 malonate decarboxylase subunit beta compare
PS417_27195 -1.7 -1.1 N-acetylglutamate synthase compare
PS417_19850 -1.7 -8.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_02000 -1.7 -9.5 glutamate synthase compare
PS417_06200 -1.7 -6.8 protein-PII uridylyltransferase compare
PS417_25720 -1.7 -6.5 anthranilate synthase component II compare
PS417_22450 -1.7 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_04390 -1.7 -3.7 toluene tolerance protein compare
PS417_01565 -1.6 -4.4 imidazole glycerol phosphate synthase compare
PS417_02975 -1.6 -2.4 3-dehydroquinate dehydratase compare
PS417_20705 -1.6 -2.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_04365 -1.6 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_25315 -1.6 -4.4 membrane protein compare
PS417_18560 -1.6 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_19665 -1.6 -3.7 flagellar motor protein MotD compare
PS417_19705 -1.6 -2.6 flagellar biosynthesis regulator FlhF compare
PS417_18585 -1.5 -4.8 3-isopropylmalate dehydrogenase compare
PS417_01575 -1.5 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04415 -1.5 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27640 -1.5 -1.2 TetR family transcriptional regulator compare
PS417_01635 -1.5 -7.8 nitrogen regulation protein NR(I) compare
PS417_27870 -1.5 -3.1 ATP-dependent DNA helicase RecG compare
PS417_02005 -1.5 -7.4 glutamate synthase compare
PS417_12310 -1.5 -7.4 methionine synthase compare
PS417_24155 -1.5 -1.4 ATP-binding protein compare
PS417_19840 -1.5 -9.1 flagellar cap protein FliD compare
PS417_25715 -1.5 -4.3 anthranilate phosphoribosyltransferase compare
PS417_01560 -1.5 -1.5 imidazoleglycerol-phosphate dehydratase compare
PS417_25725 -1.5 -9.3 anthranilate synthase component I compare
PS417_02575 -1.4 -2.3 membrane protein compare
PS417_19865 -1.4 -7.7 flagellar hook protein FlgK compare
PS417_09915 -1.4 -1.7 hypothetical protein compare
PS417_07565 -1.4 -2.4 hypothetical protein compare
PS417_16195 -1.4 -1.2 AraC family transcriptional regulator compare
PS417_01290 -1.4 -1.6 ADP-ribose diphosphatase compare
PS417_19860 -1.4 -9.5 flagellar hook protein FlgL compare
PS417_05635 -1.4 -6.6 membrane protein compare
PS417_07170 -1.3 -2.8 hypothetical protein compare
PS417_21565 -1.3 -4.4 flagellar basal body rod protein FlgC compare
PS417_25710 -1.3 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_27800 -1.3 -2.5 exodeoxyribonuclease III compare
PS417_26335 -1.3 -2.4 BetI family transcriptional regulator compare
PS417_13425 -1.3 -2.2 cupin compare
PS417_04595 -1.3 -2.0 cell division protein MraZ compare
PS417_16465 -1.3 -6.3 sirohydrochlorin ferrochelatase compare
PS417_19790 -1.3 -3.7 ATP synthase compare
PS417_21000 -1.3 -1.8 CrfX protein compare
PS417_00185 -1.3 -2.5 tryptophan synthase subunit beta compare
PS417_01920 -1.3 -0.9 ATP-dependent protease subunit HslV compare
PS417_28070 -1.3 -5.7 phosphate ABC transporter ATP-binding protein compare
PS417_18595 -1.3 -3.8 3-isopropylmalate dehydratase compare
PS417_27305 -1.3 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
PS417_12805 -1.3 -7.5 glycogen branching protein compare
PS417_27135 -1.3 -0.8 glutamine synthetase compare
PS417_19955 -1.2 -1.2 hypothetical protein compare
PS417_06685 -1.2 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_23800 -1.2 -5.5 ketol-acid reductoisomerase compare
PS417_05815 -1.2 -3.4 recombinase RecA compare
PS417_25780 -1.2 -2.0 molecular chaperone DnaJ compare
PS417_23775 -1.2 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_19350 -1.2 -2.6 GTP cyclohydrolase compare
PS417_02510 -1.2 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_08245 -1.2 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21555 -1.2 -8.7 flagellar hook protein FlgE compare
PS417_01145 -1.2 -0.8 taurine transporter ATP-binding subunit compare
PS417_19880 -1.2 -4.2 flagellar basal body L-ring protein compare
PS417_20700 -1.2 -6.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_08410 -1.2 -1.5 hypothetical protein compare
PS417_22570 -1.2 -0.8 H-NS histone compare
PS417_23545 -1.1 -1.4 gamma-glutamyl kinase compare
PS417_02485 -1.1 -3.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_19765 -1.1 -6.1 flagellar hook-length control protein compare
PS417_15110 -1.1 -4.1 protein BatD compare
PS417_15035 -1.1 -1.4 alkylhydroperoxidase compare
PS417_00085 -1.1 -2.0 16S rRNA methyltransferase compare
PS417_23680 -1.1 -3.0 AraC family transcriptional regulator compare
PS417_21430 -1.1 -1.3 3-oxoacyl-ACP synthase compare
PS417_01640 -1.1 -3.2 histidine kinase compare
PS417_02270 -1.1 -2.0 carbamoyltransferase compare
PS417_13510 -1.1 -0.9 polyketide cyclase compare
PS417_18930 -1.1 -1.4 restriction endonuclease subunit S compare
PS417_27245 -1.1 -2.1 aminotransferase DegT compare
PS417_18530 -1.1 -3.1 O-succinylhomoserine sulfhydrylase compare
PS417_13490 -1.1 -1.9 hypothetical protein compare
PS417_22620 -1.1 -2.5 pyruvate kinase compare
PS417_24840 -1.1 -1.2 hypothetical protein compare
PS417_26985 -1.1 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05595 -1.1 -5.5 ornithine carbamoyltransferase compare
PS417_07455 -1.1 -1.9 glutamine amidotransferase compare
PS417_06600 -1.1 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_08155 -1.1 -0.8 integration host factor subunit beta compare
PS417_26370 -1.1 -3.5 RNA helicase compare
PS417_11830 -1.1 -1.6 membrane protein compare
PS417_02765 -1.0 -1.3 phosphate starvation-inducible protein PsiF compare
PS417_20160 -1.0 -3.2 cysteine synthase compare
PS417_12290 -1.0 -3.7 sulfite reductase compare
PS417_01855 -1.0 -1.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_15100 -1.0 -2.0 BatB protein compare
PS417_09605 -1.0 -1.4 glycosyl transferase compare
PS417_23950 -1.0 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_15105 -1.0 -4.2 membrane protein compare
PS417_15885 -1.0 -1.6 GCN5 family acetyltransferase compare
PS417_16555 -1.0 -1.2 cupin compare
PS417_27875 -1.0 -6.1 histidine kinase compare
PS417_26745 -1.0 -3.0 methionine biosynthesis protein MetW compare
PS417_26740 -1.0 -4.6 homoserine acetyltransferase compare
PS417_06710 -1.0 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_04385 -1.0 -2.7 organic solvent ABC transporter substrate-binding protein compare
PS417_12355 -1.0 -1.0 magnesium chelatase compare
PS417_19660 -1.0 -3.7 cobalamin biosynthesis protein CobQ compare
PS417_01285 -1.0 -1.4 haloacid dehalogenase compare
PS417_28080 -1.0 -6.4 phosphate ABC transporter permease compare
PS417_09695 -1.0 -1.4 hydrolase compare
PS417_20725 -1.0 -1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_19735 -1.0 -3.8 flagellar biosynthesis protein FliQ compare
PS417_15090 -1.0 -1.4 hypothetical protein compare
PS417_22855 -1.0 -2.5 ssDNA exonuclease RecJ compare
PS417_23110 -1.0 -4.5 2-isopropylmalate synthase compare
PS417_06370 -0.9 -0.8 cold-shock protein compare
PS417_19725 -0.9 -4.2 flagellar biosynthesis protein FlhB compare
PS417_08685 -0.9 -1.2 flagellar hook-length control protein FliK compare
PS417_26995 -0.9 -4.9 phosphoserine phosphatase compare
PS417_04380 -0.9 -0.8 ABC transporter permease compare
PS417_15085 -0.9 -2.3 ATPase AAA compare
PS417_16080 -0.9 -1.8 AraC family transcriptional regulator compare
PS417_22050 -0.9 -2.4 ribonuclease BN compare
PS417_21585 -0.9 -5.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_08230 -0.9 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_02475 -0.9 -1.9 N-acetylmuramoyl-L-alanine amidase compare
PS417_07710 -0.9 -2.6 membrane protein compare
PS417_21595 -0.9 -4.6 flagellar biosynthesis protein FlgN compare
PS417_16490 -0.9 -1.2 cell division protein FtsK compare
PS417_27585 -0.9 -1.0 diaminopimelate epimerase compare
PS417_17215 -0.9 -1.5 peptidylprolyl isomerase compare
PS417_18020 -0.9 -1.1 hypothetical protein compare
PS417_15095 -0.9 -1.8 hypothetical protein compare
PS417_23900 -0.9 -5.1 poly(A) polymerase compare
PS417_21870 -0.9 -2.1 glycerophosphodiester phosphodiesterase compare
PS417_05525 -0.9 -2.0 Fis family transcriptional regulator compare
PS417_05985 -0.9 -1.7 chemotaxis protein CheY compare
PS417_19795 -0.9 -5.2 flagellar assembly protein FliH compare
PS417_12260 -0.9 -1.3 hypothetical protein compare
PS417_21510 -0.9 -0.9 histidine kinase compare
PS417_27520 -0.9 -2.1 uroporphyrin-III methyltransferase compare
PS417_18310 -0.9 -0.9 hypothetical protein compare
PS417_15305 -0.9 -2.5 type VI secretion protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments