Experiment set19IT019 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine hydrochloride monohydrate; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22565 -4.8 -1.5 formyltetrahydrofolate deformylase compare
PS417_03560 -4.7 -3.0 GTP-binding protein compare
PS417_18310 -4.7 -2.5 hypothetical protein compare
PS417_20985 -4.0 -2.7 porin compare
PS417_02975 -3.4 -3.6 3-dehydroquinate dehydratase compare
PS417_02280 -3.1 -2.1 GlcNAc-PI de-N-acetylase compare
PS417_24745 -3.0 -5.0 gamma-glutamyl phosphate reductase compare
PS417_04650 -2.7 -1.1 D-alanine--D-alanine ligase compare
PS417_27300 -2.7 -1.2 cell division protein ZapA compare
PS417_27795 -2.6 -1.2 orotate phosphoribosyltransferase compare
PS417_26730 -2.6 -1.2 pyrroline-5-carboxylate reductase compare
PS417_08135 -2.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22450 -2.4 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_23770 -2.3 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_03260 -2.3 -1.7 5S ribosomal RNA compare
PS417_06375 -2.3 -1.0 deoxycytidine triphosphate deaminase compare
PS417_15095 -2.2 -1.9 hypothetical protein compare
PS417_09210 -2.2 -2.0 TetR family transcriptional regulator compare
PS417_27865 -2.2 -2.3 LysR family transcriptional regulator compare
PS417_16715 -2.2 -2.0 DoxX family protein compare
PS417_27800 -2.1 -2.8 exodeoxyribonuclease III compare
PS417_00180 -2.0 -3.4 tryptophan synthase subunit alpha compare
PS417_19350 -1.8 -4.8 GTP cyclohydrolase compare
PS417_04365 -1.8 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21480 -1.8 -1.1 23S rRNA pseudouridylate synthase compare
PS417_10335 -1.7 -3.1 peroxiredoxin compare
PS417_02555 -1.7 -9.4 exoribonuclease R compare
PS417_06680 -1.6 -5.9 nuclease PIN compare
PS417_15285 -1.6 -1.2 type VI secretion protein compare
PS417_06145 -1.6 -1.1 hypothetical protein compare
PS417_02575 -1.6 -4.0 membrane protein compare
PS417_27245 -1.6 -3.1 aminotransferase DegT compare
PS417_26695 -1.6 -1.4 uracil phosphoribosyltransferase compare
PS417_01915 -1.5 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_03000 -1.5 -2.0 translation initiation factor Sui1 compare
PS417_15135 -1.5 -1.7 hypothetical protein compare
PS417_01590 -1.5 -2.1 polysaccharide deacetylase compare
PS417_23545 -1.5 -1.6 gamma-glutamyl kinase compare
PS417_27425 -1.5 -5.0 exopolyphosphatase compare
PS417_26370 -1.4 -2.9 RNA helicase compare
PS417_21430 -1.4 -2.2 3-oxoacyl-ACP synthase compare
PS417_23025 -1.4 -5.7 murein transglycosylase compare
PS417_23775 -1.4 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_16555 -1.4 -1.4 cupin compare
PS417_07170 -1.3 -3.7 hypothetical protein compare
PS417_08130 -1.3 -1.8 aspartate aminotransferase compare
PS417_27870 -1.3 -2.0 ATP-dependent DNA helicase RecG compare
PS417_19955 -1.3 -1.6 hypothetical protein compare
PS417_27815 -1.3 -1.3 hypothetical protein compare
PS417_15085 -1.3 -3.8 ATPase AAA compare
PS417_25710 -1.3 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_24705 -1.3 -2.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_27585 -1.3 -1.4 diaminopimelate epimerase compare
PS417_23810 -1.2 -6.2 acetolactate synthase 3 catalytic subunit compare
PS417_12855 -1.2 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07710 -1.2 -3.2 membrane protein compare
PS417_15110 -1.2 -4.2 protein BatD compare
PS417_07560 -1.2 -1.7 universal stress protein UspA compare
PS417_24585 -1.2 -5.9 AMP nucleosidase compare
PS417_21655 -1.2 -0.8 aspartate kinase compare
PS417_06685 -1.2 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_28070 -1.2 -3.8 phosphate ABC transporter ATP-binding protein compare
PS417_10985 -1.2 -1.0 NADH:flavin oxidoreductase compare
PS417_06205 -1.1 -5.2 methionine aminopeptidase compare
PS417_04390 -1.1 -3.2 toluene tolerance protein compare
PS417_26990 -1.1 -0.8 RNA pyrophosphohydrolase compare
PS417_04375 -1.1 -1.5 ABC transporter ATP-binding protein compare
PS417_06600 -1.1 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_16510 -1.1 -1.9 Clp protease ClpX compare
PS417_23805 -1.0 -2.4 acetolactate synthase 3 regulatory subunit compare
PS417_02720 -1.0 -0.9 TetR family transcriptional regulator compare
PS417_22445 -1.0 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_05065 -1.0 -1.7 hypothetical protein compare
PS417_07640 -1.0 -1.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_00375 -1.0 -1.8 membrane protein compare
PS417_05815 -1.0 -2.1 recombinase RecA compare
PS417_19275 -1.0 -0.7 hypothetical protein compare
PS417_02485 -1.0 -2.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_11925 -1.0 -2.2 hypothetical protein compare
PS417_01685 -1.0 -3.0 membrane protein compare
PS417_07565 -1.0 -2.2 hypothetical protein compare
PS417_09325 -1.0 -3.0 peptidase S41 compare
PS417_11535 -1.0 -2.1 nicotinate phosphoribosyltransferase compare
PS417_03045 -1.0 -1.6 hypothetical protein compare
PS417_25270 -1.0 -1.4 NrdR family transcriptional regulator compare
PS417_06150 -1.0 -2.4 SAM-dependent methlyltransferase compare
PS417_28080 -0.9 -6.3 phosphate ABC transporter permease compare
PS417_17035 -0.9 -1.1 Cro/Cl family transcriptional regulator compare
PS417_18070 -0.9 -0.9 general secretion pathway protein GspH compare
PS417_12870 -0.9 -1.1 enoyl-CoA hydratase compare
PS417_15105 -0.9 -3.0 membrane protein compare
PS417_26835 -0.9 -1.3 3-mercaptopyruvate sulfurtransferase compare
PS417_02415 -0.9 -2.4 phosphoserine phosphatase compare
PS417_21625 -0.9 -0.9 DNA-binding protein compare
PS417_12310 -0.9 -3.9 methionine synthase compare
PS417_16195 -0.9 -0.9 AraC family transcriptional regulator compare
PS417_11475 -0.9 -2.4 membrane protein compare
PS417_16720 -0.9 -1.0 membrane protein compare
PS417_05535 -0.9 -1.5 Fis family transcriptional regulator compare
PS417_23380 -0.9 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_20025 -0.9 -1.5 alpha-ribazole phosphatase compare
PS417_19065 -0.9 -0.8 monooxygenase compare
PS417_00030 -0.9 -1.7 hypothetical protein compare
PS417_24155 -0.9 -1.3 ATP-binding protein compare
PS417_00175 -0.9 -0.9 CigR compare
PS417_07615 -0.9 -3.2 TetR family transcriptional regulator compare
PS417_08025 -0.8 -1.2 acetylornithine aminotransferase compare
PS417_27505 -0.8 -2.9 transcriptional regulator compare
PS417_02700 -0.8 -1.8 urease accessory protein UreG compare
PS417_16055 -0.8 -1.5 biopolymer transporter TolR compare
PS417_15305 -0.8 -1.3 type VI secretion protein compare
PS417_24785 -0.8 -1.0 nucleoside-diphosphate sugar epimerase compare
PS417_24430 -0.8 -1.0 3-dehydroquinate dehydratase compare
PS417_23250 -0.8 -3.4 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_28350 -0.8 -2.9 fatty acid methyltransferase compare
PS417_02895 -0.8 -1.8 precorrin-6Y C5,15-methyltransferase compare
PS417_18395 -0.8 -1.6 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_27715 -0.8 -1.5 Fe-S oxidoreductase compare
PS417_04595 -0.8 -1.6 cell division protein MraZ compare
PS417_22300 -0.8 -1.1 LTXXQ domain protein compare
PS417_00350 -0.8 -2.2 methionine ABC transporter substrate-binding protein compare
PS417_24500 -0.8 -1.8 DEAD/DEAH box helicase compare
PS417_04290 -0.8 -2.0 hypothetical protein compare
PS417_08590 -0.8 -1.5 hypothetical protein compare
PS417_21575 -0.8 -3.3 chemotaxis protein compare
PS417_20610 -0.8 -1.2 hypothetical protein compare
PS417_11810 -0.8 -1.2 oxidoreductase compare
PS417_02885 -0.8 -1.7 hypothetical protein compare
PS417_08540 -0.8 -1.6 RNA helicase compare
PS417_19620 -0.8 -1.3 hypothetical protein compare
PS417_00405 -0.8 -3.3 DNA polymerase I compare
PS417_27925 -0.8 -1.9 hypothetical protein compare
PS417_17805 -0.8 -2.0 microcin B17 processing protein McbC compare
PS417_28085 -0.8 -5.2 phosphate-binding protein compare
PS417_23995 -0.8 -0.5 preprotein translocase subunit SecG compare
PS417_22840 -0.8 -1.0 tRNA-Met compare
PS417_02000 -0.8 -5.0 glutamate synthase compare
PS417_23375 -0.8 -1.4 cytochrome C oxidase compare
PS417_23135 -0.8 -1.3 GTP-binding protein compare
PS417_13800 -0.8 -1.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_23900 -0.8 -3.0 poly(A) polymerase compare
PS417_07700 -0.8 -0.7 chromosome partitioning protein ParA compare
PS417_01095 -0.8 -0.9 amino acid ABC transporter ATP-binding protein compare
PS417_10665 -0.7 -2.0 hypothetical protein compare
PS417_11625 -0.7 -2.3 fumarate hydratase compare
PS417_05475 -0.7 -1.5 arginase compare
PS417_21630 -0.7 -1.0 magnesium transporter compare
PS417_26770 -0.7 -1.1 tRNA (guanine-N7)-methyltransferase compare
PS417_05860 -0.7 -1.5 hypothetical protein compare
PS417_14515 -0.7 -1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_13165 -0.7 -1.6 peroxidase compare
PS417_27445 -0.7 -3.7 membrane protein compare
PS417_12805 -0.7 -3.9 glycogen branching protein compare
PS417_14185 -0.7 -1.4 transcriptional regulator compare
PS417_07870 -0.7 -1.5 hypothetical protein compare
PS417_04420 -0.7 -3.6 histidinol dehydrogenase compare
PS417_18420 -0.7 -1.9 deoxyribonuclease compare
PS417_00185 -0.7 -1.6 tryptophan synthase subunit beta compare
PS417_26305 -0.7 -1.7 AraC family transcriptional regulator compare
PS417_26985 -0.7 -2.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_22640 -0.7 -1.4 cytochrome C biogenesis protein CcmE compare
PS417_02805 -0.7 -0.8 urease subunit gamma compare
PS417_01030 -0.7 -0.8 glutamine ABC transporter substrate-binding protein compare
PS417_12915 -0.7 -2.5 DNA-binding protein compare
PS417_11950 -0.7 -0.8 hypothetical protein compare
PS417_15225 -0.7 -2.1 alpha/beta hydrolase compare
PS417_26400 -0.7 -1.6 metal-dependent hydrolase compare
PS417_23390 -0.7 -2.9 ubiquinol oxidase subunit II compare
PS417_06245 -0.7 -0.7 zinc metallopeptidase RseP compare
PS417_14165 -0.7 -1.4 ArsR family transcriptional regulator compare
PS417_08685 -0.6 -1.0 flagellar hook-length control protein FliK compare
PS417_26365 -0.6 -1.9 EmrB/QacA subfamily drug resistance transporter compare
PS417_23535 -0.6 -1.9 glutathione peroxidase compare
PS417_12005 -0.6 -1.4 hypothetical protein compare
PS417_21210 -0.6 -2.0 amidotransferase compare
PS417_03300 -0.6 -1.7 alanine acetyltransferase compare
PS417_16005 -0.6 -0.9 ATPase compare
PS417_11380 -0.6 -1.7 peptidylprolyl isomerase compare
PS417_22895 -0.6 -3.1 tyrosine recombinase XerD compare
PS417_13965 -0.6 -1.8 acetoin utilization protein compare
PS417_00455 -0.6 -1.0 hypothetical protein compare
PS417_12390 -0.6 -0.7 hypothetical protein compare
PS417_03815 -0.6 -1.5 DNA transporter compare
PS417_19285 -0.6 -0.9 ankyrin compare
PS417_07755 -0.6 -4.0 hypothetical protein compare
PS417_08410 -0.6 -1.3 hypothetical protein compare
PS417_14755 -0.6 -1.0 UV damage repair endonuclease UvdE compare
PS417_21705 -0.6 -1.9 arginine N-succinyltransferase compare
PS417_02270 -0.6 -2.1 carbamoyltransferase compare
PS417_00015 -0.6 -2.6 recombinase RecF compare
PS417_18355 -0.6 -2.9 DNA-binding protein compare
PS417_02780 -0.6 -2.2 DNA-binding protein compare
PS417_23800 -0.6 -3.2 ketol-acid reductoisomerase compare
PS417_12585 -0.6 -3.1 acriflavine resistance protein B compare
PS417_10265 -0.6 -1.2 peptidase compare
PS417_20845 -0.6 -2.9 hypothetical protein compare
PS417_19415 -0.6 -1.2 allantoinase compare
PS417_00825 -0.6 -1.6 recombinase RecF compare
PS417_17855 -0.6 -1.7 major facilitator transporter compare
PS417_04270 -0.6 -2.9 ribonuclease G compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments