Experiment set19IT019 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_34; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.5 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.9 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_2371 -4.6 -7.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4701 -4.6 -1.4 glucose-6-phosphate isomerase compare
PP_0290 -4.5 -7.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -4.4 -8.5 tryptophan synthase beta chain compare
PP_0512 -4.3 -2.5 hypothetical protein compare
PP_1898 -4.3 -4.5 MotA/TolQ/ExbB proton channel family protein compare
PP_4804 -4.1 -2.8 RlpA-like lipoprotein compare
PP_0846 -4.0 -2.0 DnaK-like molecular chaperone specific for IscU compare
PP_4828 -3.9 -1.7 Precorrin-8X methylmutase compare
PP_4890 -3.9 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0082 -3.8 -4.9 tryptophan synthase alpha chain compare
PP_5347 -3.7 -9.5 pyruvate carboxylase subunit A compare
PP_4994 -3.7 -4.9 conserved protein of unknown function compare
PP_5185 -3.6 -5.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4696 -3.5 -7.1 Nitrogen regulation protein NR(I) compare
PP_1079 -3.4 -4.6 Ornithine carbamoyltransferase compare
PP_5546 -3.4 -3.2 conserved protein of unknown function compare
PP_1985 -3.3 -3.6 3-isopropylmalate dehydratase large subunit compare
PP_5098 -3.3 -5.5 methionine biosynthesis protein MetW compare
PP_5348 -3.3 -6.6 Transcriptional regulator, LysR family compare
PP_5155 -3.0 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4874 -3.0 -1.8 50S ribosomal protein L9 compare
PP_4678 -2.9 -9.2 Ketol-acid reductoisomerase compare
PP_0966 -2.9 -7.0 Histidinol dehydrogenase compare
PP_4129 -2.8 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4909 -2.8 -5.8 phosphoserine phosphatase compare
PP_5097 -2.8 -8.6 homoserine O-acetyltransferase compare
PP_4679 -2.8 -3.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1654 -2.7 -4.0 cysteine synthase B compare
PP_1362 -2.7 -4.7 pyruvate kinase II compare
PP_0967 -2.7 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3999 -2.7 -7.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1729 -2.7 -2.2 conserved protein of unknown function compare
PP_2378 -2.6 -3.8 Fe/S biogenesis protein NfuA compare
PP_4964 -2.6 -4.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4223 -2.5 -2.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0422 -2.5 -4.2 Indole-3-glycerol phosphate synthase compare
PP_0420 -2.5 -5.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3903 -2.5 -2.5 conserved protein of unknown function compare
PP_1231 -2.5 -5.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_5346 -2.4 -6.1 pyruvate carboxylase subunit B compare
PP_4680 -2.4 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -2.4 -6.3 Dihydroxy-acid dehydratase compare
PP_5095 -2.4 -1.4 pyrroline-5-carboxylate reductase compare
PP_0962 -2.3 -2.7 toluene-tolerance protein compare
PP_5028 -2.3 -4.1 proline iminopeptidase compare
PP_5168 -2.3 -3.8 sulfate/thiosulfate import ATP-binding protein compare
PP_2898 -2.3 -1.6 conserved exported protein of unknown function compare
PP_3417 -2.2 -4.3 D-gluconate transporter compare
PP_2370 -2.2 -2.7 conserved protein of unknown function compare
PP_2088 -2.1 -2.1 RNA polymerase sigma factor SigX compare
PP_2328 -2.1 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_0184 -2.1 -4.1 Argininosuccinate lyase compare
PP_1269 -2.0 -1.3 Universal stress protein family compare
PP_3511 -2.0 -4.6 Branched-chain-amino-acid aminotransferase compare
PP_2402 -2.0 -2.1 putative Sensor histidine kinase compare
PP_2327 -2.0 -3.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0393 -2.0 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2878 -2.0 -2.9 conserved protein of unknown function compare
PP_4199 -1.9 -1.3 putative Lipoprotein compare
PP_1025 -1.9 -7.2 2-isopropylmalate synthase compare
PP_1088 -1.9 -5.9 Argininosuccinate synthase compare
PP_1022 -1.9 -4.7 glucose 6-phosphate-1-dehydrogenase compare
PP_0362 -1.9 -5.5 Biotin synthase compare
PP_0725 -1.9 -4.3 conserved hypothetical TPR repeat protein compare
PP_3946 -1.9 -1.4 HTH-type transcriptional repressor NicR compare
PP_2939 -1.8 -3.8 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2001 -1.8 -6.6 O-succinylhomoserine sulfhydrylase compare
PP_1912 -1.8 -3.3 Phosphate acyltransferase compare
PP_3258 -1.8 -1.9 conserved protein of unknown function compare
PP_0289 -1.8 -4.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -1.8 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5303 -1.8 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0417 -1.8 -8.2 Anthranilate synthase component 1 compare
PP_1353 -1.8 -3.1 conserved membrane protein of unknown function compare
PP_0366 -1.7 -4.2 dethiobiotin synthetase compare
PP_1216 -1.7 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4785 -1.7 -5.3 conserved exported protein of unknown function compare
PP_4937 -1.7 -2.4 toluene tolerance protein compare
PP_4546 -1.6 -4.2 ATP-dependent helicase HrpA compare
PP_0833 -1.6 -1.1 queuine tRNA-ribosyltransferase compare
PP_0319 -1.6 -1.3 conserved protein of unknown function compare
PP_2168 -1.6 -5.3 Transaldolase compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0291 -1.6 -1.7 conserved protein of unknown function compare
PP_2145 -1.6 -2.3 beta-N-acetylglucosaminidase compare
PP_2336 -1.6 -3.4 aconitate hydratase 1 compare
PP_3506 -1.6 -3.1 Magnesium chelatase, subunit ChII compare
PP_1988 -1.5 -3.9 3-isopropylmalate dehydrogenase compare
PP_0364 -1.5 -4.5 pimeloyl-[acp] methyl ester esterase compare
PP_0022 -1.5 -1.1 hypothetical protein compare
PP_0274 -1.5 -1.6 putative transcriptional regulator containing HTH domain compare
PP_1995 -1.5 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4787 -1.4 -1.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4984 -1.4 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0787 -1.4 -1.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4895 -1.4 -2.2 tRNA dimethylallyltransferase compare
PP_4504 -1.4 -1.3 conserved exported protein of unknown function compare
PP_4829 -1.4 -2.4 putative precorrin-3B synthase compare
PP_0888 -1.4 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_5014 -1.4 -1.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_3043 -1.4 -1.9 conserved protein of unknown function compare
PP_5054 -1.4 -1.7 glutaredoxin 3 compare
PP_5350 -1.4 -2.0 Transcriptional regulator, RpiR family compare
PP_4480 -1.3 -5.3 arginine N-succinyltransferase, subunit alpha compare
PP_5SB -1.3 -3.4 5S ribosomal RNA compare
PP_0421 -1.3 -3.2 Anthranilate phosphoribosyltransferase compare
PP_4130 -1.3 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0363 -1.3 -4.8 8-amino-7-oxononanoate synthase compare
PP_5015 -1.3 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1664 -1.3 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_2720 -1.3 -1.2 conserved protein of unknown function compare
PP_4824 -1.3 -3.8 Sensor histidine kinase/response regulator compare
PP_2903 -1.3 -1.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3563 -1.2 -2.1 conserved exported protein of unknown function compare
PP_1672 -1.2 -3.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4880 -1.2 -5.5 exoribonuclease R compare
PP_1673 -1.2 -3.5 cobyrinate a,c-diamide synthase compare
PP_4699 -1.2 -1.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0261 -1.2 -2.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0643 -1.2 -2.3 protein of unknown function compare
PP_2388 -1.2 -1.6 Transporter, LysE family compare
PP_2883 -1.1 -1.0 conserved protein of unknown function compare
PP_1829 -1.1 -1.2 Hydrolase, alpha/beta fold family compare
PP_4981 -1.1 -1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_4988 -1.1 -3.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0425 -1.1 -1.8 conserved protein of unknown function compare
PP_1783 -1.1 -1.6 dTDP-glucose pyrophosphorylase compare
PP_5639 -1.1 -3.4 conserved exported protein of unknown function compare
PP_0949 -1.1 -2.3 putative ATP-binding protein UPF0042 compare
PP_0126 -1.1 -1.7 Cytochrome c4 compare
PP_0550 -1.1 -2.5 conserved protein of unknown function compare
PP_5217 -1.1 -4.2 Polyphosphate kinase compare
PP_3348 -1.1 -4.2 GGDEF domain protein compare
PP_4693 -1.1 -2.6 RNA polymerase-binding transcription factor DksA compare
PP_4159 -1.1 -2.0 Potassium-transporting ATPase C chain compare
PP_0434 -1.1 -3.1 Anhydro-N-acetylmuramic acid kinase compare
PP_4124 -1.1 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_5295 -1.1 -1.1 conserved protein of unknown function compare
PP_2160 -1.0 -1.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4902 -1.0 -1.1 Oligoribonuclease compare
PP_1906 -1.0 -1.3 ribosomal large subunit pseudouridine synthase C compare
PP_1074 -1.0 -1.7 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_3064 -1.0 -1.9 Phage tail protein compare
PP_4977 -1.0 -4.1 5,10-methylenetetrahydrofolate reductase compare
PP_1426 -1.0 -4.3 L-aspartate oxidase compare
PP_2060 -1.0 -1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0220 -1.0 -1.9 methionine import ATP-binding protein metN2 compare
PP_5331 -1.0 -1.9 Long-chain acyl-CoA thioester hydrolase compare
PP_0775 -1.0 -1.1 conserved protein of unknown function compare
PP_1276 -1.0 -2.6 conserved protein of unknown function compare
PP_4010 -1.0 -1.5 DNA replication inhibitor compare
PP_5227 -1.0 -3.8 diaminopimelate decarboxylase compare
PP_5008 -1.0 -1.1 Poly granule-associated protein compare
PP_5058 -1.0 -2.3 Carboxy-terminal-processing protease compare
PP_3508 -1.0 -1.3 Protein CobW compare
PP_2322 -1.0 -2.9 Major outer membrane lipoprotein compare
PP_1824 -1.0 -1.0 Smr domain protein compare
PP_4642 -1.0 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_5000 -1.0 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_5499 -1.0 -1.9 conserved protein of unknown function compare
PP_1630 -1.0 -2.0 Regulatory protein RecX compare
PP_2214 -0.9 -2.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1656 -0.9 -3.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_5505 -0.9 -2.3 conserved transmembrane protein of unknown function compare
PP_2433 -0.9 -1.2 conserved protein of unknown function compare
PP_0919 -0.9 -1.5 conserved protein of unknown function compare
PP_2793 -0.9 -1.1 Acyl-CoA dehydrogenase family protein compare
PP_3280 -0.9 -1.9 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_2668 -0.9 -1.9 ABC efflux transporter, ATP-binding protein compare
PP_1214 -0.9 -0.9 putative transcriptional regulatory protein compare
PP_1304 -0.9 -3.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2203 -0.9 -2.0 conserved protein of unknown function compare
PP_t11 -0.9 -1.3 tRNA-Lys compare
PP_3277 -0.9 -1.9 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_1679 -0.9 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2348 -0.9 -2.8 Sensor histidine kinase compare
PP_4419 -0.9 -2.0 transposase compare
PP_2337 -0.9 -1.5 aconitate isomerase compare
PP_2455 -0.9 -3.3 ribose ABC transporter - ATP-binding subunit compare
PP_3014 -0.9 -2.0 conserved exported protein of unknown function compare
PP_3748 -0.9 -1.6 conserved hypothetical protein compare
PP_0122 -0.9 -0.8 conserved exported protein of unknown function compare
PP_0832 -0.9 -2.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5076 -0.9 -5.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_2302 -0.9 -2.0 DNA-binding, ATP-dependent protease compare
PP_0509 -0.9 -1.9 conserved protein of unknown function compare
PP_2375 -0.9 -4.8 cobalamin-dependent methionine synthase compare
PP_3158 -0.8 -2.0 conserved exported protein of unknown function compare
PP_2582 -0.8 -2.2 putative Heme oxygenase compare
PP_5104 -0.8 -3.2 thiazole synthase compare
PP_4837 -0.8 -1.6 conserved protein of unknown function compare
PP_4875 -0.8 -2.4 conserved membrane protein of unknown function compare
PP_5083 -0.8 -1.3 putative Type IV pili biogenesis protein PilM compare
PP_3792 -0.8 -2.2 conserved protein of unknown function compare
PP_2121 -0.8 -1.2 putative Lipoprotein compare
PP_0339 -0.8 -0.6 Pyruvate dehydrogenase E1 component compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms