Experiment set19IT018 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_34

200 most important genes:

  gene name fitness t score description  
PP_0083 -4.5 -9.6 tryptophan synthase beta chain compare
PP_4696 -4.4 -6.7 Nitrogen regulation protein NR(I) compare
PP_0082 -4.1 -7.7 tryptophan synthase alpha chain compare
PP_1079 -3.9 -8.0 Ornithine carbamoyltransferase compare
PP_0292 -3.8 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4804 -3.8 -4.5 RlpA-like lipoprotein compare
PP_5347 -3.8 -13.4 pyruvate carboxylase subunit A compare
PP_0289 -3.7 -9.5 Imidazoleglycerol-phosphate dehydratase compare
PP_2402 -3.7 -3.5 putative Sensor histidine kinase compare
PP_5346 -3.5 -7.3 pyruvate carboxylase subunit B compare
PP_4902 -3.5 -4.1 Oligoribonuclease compare
PP_2370 -3.4 -5.5 conserved protein of unknown function compare
PP_3999 -3.3 -9.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4678 -3.2 -15.7 Ketol-acid reductoisomerase compare
PP_1995 -3.2 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2168 -3.2 -11.0 Transaldolase compare
PP_5185 -3.2 -7.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1988 -3.1 -9.1 3-isopropylmalate dehydrogenase compare
PP_0184 -3.0 -7.4 Argininosuccinate lyase compare
PP_4680 -3.0 -14.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -3.0 -7.4 Dihydroxy-acid dehydratase compare
PP_1985 -2.9 -7.6 3-isopropylmalate dehydratase large subunit compare
PP_5155 -2.9 -4.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4977 -2.9 -13.1 5,10-methylenetetrahydrofolate reductase compare
PP_3511 -2.8 -9.8 Branched-chain-amino-acid aminotransferase compare
PP_0293 -2.8 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -2.8 -5.8 Indole-3-glycerol phosphate synthase compare
PP_2375 -2.8 -14.0 cobalamin-dependent methionine synthase compare
PP_1237 -2.7 -2.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2327 -2.7 -6.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0966 -2.7 -10.3 Histidinol dehydrogenase compare
PP_5098 -2.7 -8.6 methionine biosynthesis protein MetW compare
PP_0967 -2.6 -9.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2371 -2.6 -6.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1733 -2.6 -5.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4909 -2.6 -7.4 phosphoserine phosphatase compare
PP_5348 -2.6 -10.1 Transcriptional regulator, LysR family compare
PP_0421 -2.6 -8.4 Anthranilate phosphoribosyltransferase compare
PP_2328 -2.6 -8.5 Phosphoadenosine phosphosulfate reductase compare
PP_1088 -2.6 -10.8 Argininosuccinate synthase compare
PP_4890 -2.6 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_4785 -2.5 -8.6 conserved exported protein of unknown function compare
PP_0417 -2.5 -14.6 Anthranilate synthase component 1 compare
PP_4829 -2.5 -5.9 putative precorrin-3B synthase compare
PP_5097 -2.4 -12.2 homoserine O-acetyltransferase compare
PP_5217 -2.4 -11.2 Polyphosphate kinase compare
PP_1673 -2.4 -7.7 cobyrinate a,c-diamide synthase compare
PP_2862 -2.4 -6.8 Undecaprenyl-diphosphatase compare
PP_1679 -2.4 -5.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1022 -2.4 -5.7 glucose 6-phosphate-1-dehydrogenase compare
PP_1025 -2.4 -11.3 2-isopropylmalate synthase compare
PP_4830 -2.4 -6.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_4679 -2.3 -5.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2145 -2.1 -3.7 beta-N-acetylglucosaminidase compare
PP_5203 -2.1 -7.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_0362 -2.1 -9.6 Biotin synthase compare
PP_0965 -2.0 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0787 -2.0 -4.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0291 -2.0 -1.8 conserved protein of unknown function compare
PP_4700 -2.0 -2.9 pantothenate synthetase compare
PP_4828 -2.0 -2.4 Precorrin-8X methylmutase compare
PP_4994 -1.9 -5.9 conserved protein of unknown function compare
PP_1231 -1.9 -7.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5289 -1.9 -3.7 Acetylglutamate kinase compare
PP_4943 -1.9 -3.3 putative Glycosyl transferase compare
PP_0833 -1.9 -1.3 queuine tRNA-ribosyltransferase compare
PP_1986 -1.9 -3.1 3-isopropylmalate dehydratase small subunit compare
PP_1898 -1.9 -4.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1677 -1.9 -5.4 Adenosyl-cobyric acid synthase compare
PP_5090 -1.8 -3.0 putative cell division protein compare
PP_1734 -1.8 -4.3 Probable septum site-determining protein MinC compare
PP_1681 -1.8 -10.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_0363 -1.8 -10.2 8-amino-7-oxononanoate synthase compare
PP_4832 -1.8 -6.2 Precorrin-6x reductase compare
PP_1672 -1.8 -4.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3507 -1.8 -10.1 Aerobic cobaltochelatase subunit CobN compare
PP_5014 -1.8 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4826 -1.8 -6.9 Precorrin-3B C17-methyltransferase compare
PP_3417 -1.8 -6.3 D-gluconate transporter compare
PP_2001 -1.7 -6.2 O-succinylhomoserine sulfhydrylase compare
PP_1676 -1.7 -4.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5303 -1.7 -6.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1675 -1.6 -7.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1656 -1.6 -5.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1664 -1.6 -3.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_1783 -1.6 -2.0 dTDP-glucose pyrophosphorylase compare
PP_4695 -1.5 -7.4 Sensory box histidine kinase compare
PP_4984 -1.5 -8.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3505 -1.4 -2.2 conserved protein of unknown function compare
PP_1303 -1.4 -6.7 Sulfate adenylyltransferase subunit 2 compare
PP_0420 -1.4 -5.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0290 -1.4 -4.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0365 -1.4 -7.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0364 -1.3 -7.0 pimeloyl-[acp] methyl ester esterase compare
PP_3821 -1.3 -8.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4964 -1.3 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4827 -1.3 -7.9 Precorrin-2 C(20)-methyltransferase compare
PP_3508 -1.3 -4.0 Protein CobW compare
PP_5639 -1.3 -6.5 conserved exported protein of unknown function compare
PP_1493 -1.3 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0547 -1.3 -5.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0406 -1.2 -3.1 Nucleotidyltransferase family protein compare
PP_4936 -1.2 -7.4 O-antigen polymerase compare
PP_1655 -1.2 -2.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0366 -1.2 -5.1 dethiobiotin synthetase compare
PP_3105 -1.2 -3.4 conserved membrane protein of unknown function compare
PP_4480 -1.2 -5.6 arginine N-succinyltransferase, subunit alpha compare
PP_1304 -1.2 -7.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1678 -1.1 -3.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1353 -1.1 -2.4 conserved membrane protein of unknown function compare
PP_2414 -1.1 -1.6 conserved exported protein of unknown function compare
PP_0001 -1.1 -2.1 probable chromosome-partitioning protein compare
PP_1020 -1.1 -2.7 putative glucose-6-phosphate 1-epimerase compare
PP_0960 -1.1 -3.1 phospholipid ABC transporter binding protein compare
PP_4504 -1.1 -1.6 conserved exported protein of unknown function compare
PP_1654 -1.1 -2.2 cysteine synthase B compare
PP_2163 -1.1 -5.0 VacJ lipoprotein compare
PP_0630 -1.1 -1.4 DNA gyrase inhibitor YacG compare
PP_4938 -1.1 -6.4 putative Glycosyl transferase compare
PP_1217 -1.1 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0775 -1.1 -1.9 conserved protein of unknown function compare
PP_0164 -1.1 -3.4 conserved protein of unknown function compare
PP_0339 -1.1 -0.7 Pyruvate dehydrogenase E1 component compare
PP_1872 -1.1 -6.1 glutamate-pyruvate aminotransferase compare
PP_3506 -1.0 -2.1 Magnesium chelatase, subunit ChII compare
PP_4940 -1.0 -6.5 Putative glycosyltransferase compare
PP_0959 -1.0 -1.9 phospholipid ABC transporter compare
PP_5095 -1.0 -1.1 pyrroline-5-carboxylate reductase compare
PP_1426 -1.0 -7.1 L-aspartate oxidase compare
PP_4122 -1.0 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5015 -1.0 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4699 -1.0 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1778 -1.0 -4.5 Lipopolysaccharide ABC export system, permease protein compare
PP_4693 -1.0 -2.6 RNA polymerase-binding transcription factor DksA compare
PP_2302 -1.0 -4.0 DNA-binding, ATP-dependent protease compare
PP_0914 -1.0 -5.9 GGDEF domain protein compare
PP_4989 -1.0 -3.2 Protein PilJ compare
PP_3409 -1.0 -1.9 putative Cobalamin biosynthesis protein cobE compare
PP_4358 -1.0 -5.8 flagellar synthesis, switching and energizing component compare
PP_3378 -1.0 -2.3 putative 2-ketogluconokinase compare
PP_5583 -0.9 -2.1 conserved protein of unknown function compare
PP_1224 -0.9 -4.0 periplasmic subunit of the TolQRA transport system compare
PP_3840 -0.9 -1.6 conserved protein of unknown function compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_0958 -0.9 -3.9 phospholipid ABC transporter ATP-binding subunit compare
PP_1011 -0.9 -4.9 glucokinase compare
PP_1355 -0.9 -5.9 Muropeptide permease AmpG compare
PP_0122 -0.9 -2.0 conserved exported protein of unknown function compare
PP_5035 -0.9 -5.3 Histidine utilization repressor compare
PP_4213 -0.9 -2.7 putative dipeptidase compare
PP_5248 -0.9 -1.7 putative hydrolase compare
PP_5017 -0.9 -1.2 Sec-independent protein translocase protein TatB compare
PP_4782 -0.9 -3.8 Phosphomethylpyrimidine kinase compare
PP_0753 -0.9 -4.5 putative Lipoprotein compare
PP_3035 -0.9 -1.6 conserved protein of unknown function compare
PP_0961 -0.8 -4.4 toluene tolerance protein compare
PP_0405 -0.8 -5.1 conserved protein of unknown function compare
PP_1994 -0.8 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_5324 -0.8 -2.3 Response regulator compare
PP_2378 -0.8 -2.0 Fe/S biogenesis protein NfuA compare
PP_1779 -0.8 -4.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1764 -0.8 -1.6 Phosphoglycolate phosphatase 2 compare
PP_0673 -0.8 -2.4 conserved protein of unknown function compare
PP_2088 -0.8 -2.1 RNA polymerase sigma factor SigX compare
PP_4988 -0.8 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0138 -0.8 -5.7 conserved membrane protein of unknown function compare
PP_0246 -0.8 -2.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_3164 -0.8 -2.8 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_4369 -0.8 -4.7 Flagellar M-ring protein compare
PP_4265 -0.8 -0.5 DNA-binding transcriptional dual regulator compare
PP_1430 -0.8 -4.5 putative periplasmic serine endoprotease DegP-like compare
PP_4263 -0.8 -2.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1609 -0.8 -2.1 conserved protein of unknown function compare
PP_1041 -0.8 -2.1 twin arginine protein export complex subunit compare
PP_5104 -0.8 -4.7 thiazole synthase compare
PP_4131 -0.8 -2.9 NADH-quinone oxidoreductase subunit N compare
PP_1346 -0.8 -3.8 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4353 -0.8 -4.4 Flagellar biosynthetic protein fliR compare
PP_5109 -0.8 -4.4 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_1826 -0.7 -2.1 Hydrolase, isochorismatase family compare
PP_4910 -0.7 -1.8 conserved protein of unknown function compare
PP_0435 -0.7 -4.1 Peptidase, M23/M37 family compare
PP_1912 -0.7 -2.9 Phosphate acyltransferase compare
PP_1780 -0.7 -6.6 putative mannosyltransferase compare
PP_4394 -0.7 -3.9 flagella basal body P-ring formation protein compare
PP_4381 -0.7 -5.5 Flagellar hook-associated protein FlgK compare
PP_2196 -0.7 -1.8 agmatinase compare
PP_4380 -0.7 -5.4 Flagellar hook-associated protein FlgL compare
PP_2750 -0.7 -2.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4341 -0.7 -4.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_1799 -0.7 -5.7 GDP-mannose 4,6-dehydratase compare
PP_1366 -0.7 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_1776 -0.7 -5.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4370 -0.7 -2.2 Flagellar hook-basal body complex protein FliE compare
PP_4368 -0.7 -3.8 flagellar motor switch protein compare
PP_1801 -0.7 -5.2 Glycosyl transferase WbpY compare
PP_0949 -0.7 -3.0 putative ATP-binding protein UPF0042 compare
PP_2203 -0.7 -2.0 conserved protein of unknown function compare
PP_5216 -0.7 -1.0 exopolyphosphatase compare
PP_2324 -0.7 -3.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms