Experiment set19IT016 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_34

200 most important genes:

  gene name fitness t score description  
PP_0082 -4.4 -9.4 tryptophan synthase alpha chain compare
PP_2168 -4.2 -12.2 Transaldolase compare
PP_4696 -4.0 -7.2 Nitrogen regulation protein NR(I) compare
PP_0083 -3.8 -9.1 tryptophan synthase beta chain compare
PP_1079 -3.6 -8.2 Ornithine carbamoyltransferase compare
PP_5346 -3.4 -9.8 pyruvate carboxylase subunit B compare
PP_4977 -3.2 -14.0 5,10-methylenetetrahydrofolate reductase compare
PP_5185 -3.2 -8.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5098 -3.2 -8.5 methionine biosynthesis protein MetW compare
PP_0967 -3.1 -10.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3999 -3.1 -10.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4678 -3.0 -15.3 Ketol-acid reductoisomerase compare
PP_0184 -3.0 -6.1 Argininosuccinate lyase compare
PP_1988 -3.0 -9.5 3-isopropylmalate dehydrogenase compare
PP_5128 -3.0 -8.4 Dihydroxy-acid dehydratase compare
PP_4680 -3.0 -13.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -3.0 -9.5 phosphoserine phosphatase compare
PP_0422 -2.9 -7.6 Indole-3-glycerol phosphate synthase compare
PP_1231 -2.9 -6.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -2.9 -6.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2370 -2.9 -5.6 conserved protein of unknown function compare
PP_4828 -2.8 -2.7 Precorrin-8X methylmutase compare
PP_1088 -2.8 -10.2 Argininosuccinate synthase compare
PP_1672 -2.8 -8.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4890 -2.8 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_5347 -2.7 -10.8 pyruvate carboxylase subunit A compare
PP_2402 -2.7 -3.6 putative Sensor histidine kinase compare
PP_0421 -2.7 -9.0 Anthranilate phosphoribosyltransferase compare
PP_2862 -2.7 -9.4 Undecaprenyl-diphosphatase compare
PP_0289 -2.7 -5.2 Imidazoleglycerol-phosphate dehydratase compare
PP_5097 -2.7 -11.6 homoserine O-acetyltransferase compare
PP_1985 -2.6 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_2371 -2.6 -7.0 Sulphite reductase hemoprotein, beta subunit compare
PP_3511 -2.6 -7.3 Branched-chain-amino-acid aminotransferase compare
PP_1025 -2.6 -13.0 2-isopropylmalate synthase compare
PP_0417 -2.6 -15.2 Anthranilate synthase component 1 compare
PP_1734 -2.5 -5.3 Probable septum site-determining protein MinC compare
PP_1995 -2.5 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0292 -2.5 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5348 -2.5 -6.6 Transcriptional regulator, LysR family compare
PP_1733 -2.5 -5.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_2375 -2.5 -15.1 cobalamin-dependent methionine synthase compare
PP_4785 -2.5 -8.5 conserved exported protein of unknown function compare
PP_5217 -2.5 -12.3 Polyphosphate kinase compare
PP_0966 -2.5 -9.3 Histidinol dehydrogenase compare
PP_5155 -2.5 -6.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5303 -2.4 -7.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4679 -2.4 -7.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0291 -2.4 -2.5 conserved protein of unknown function compare
PP_2001 -2.3 -7.1 O-succinylhomoserine sulfhydrylase compare
PP_2328 -2.3 -7.7 Phosphoadenosine phosphosulfate reductase compare
PP_4830 -2.3 -9.0 precorrin-6Y C(5,15)-methyltransferase compare
PP_4804 -2.3 -4.5 RlpA-like lipoprotein compare
PP_2327 -2.2 -7.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3508 -2.2 -4.9 Protein CobW compare
PP_4700 -2.2 -2.9 pantothenate synthetase compare
PP_1994 -2.1 -3.2 tRNA pseudouridine (38-40)synthase compare
PP_1022 -2.1 -5.3 glucose 6-phosphate-1-dehydrogenase compare
PP_1898 -2.0 -6.1 MotA/TolQ/ExbB proton channel family protein compare
PP_5289 -2.0 -5.3 Acetylglutamate kinase compare
PP_0290 -1.9 -4.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4829 -1.9 -2.9 putative precorrin-3B synthase compare
PP_5095 -1.9 -1.7 pyrroline-5-carboxylate reductase compare
PP_1679 -1.8 -4.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3506 -1.8 -6.0 Magnesium chelatase, subunit ChII compare
PP_3507 -1.8 -12.0 Aerobic cobaltochelatase subunit CobN compare
PP_0965 -1.8 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1681 -1.7 -10.8 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4827 -1.7 -9.1 Precorrin-2 C(20)-methyltransferase compare
PP_5014 -1.7 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1783 -1.7 -2.1 dTDP-glucose pyrophosphorylase compare
PP_0362 -1.7 -7.5 Biotin synthase compare
PP_1826 -1.7 -3.7 Hydrolase, isochorismatase family compare
PP_1673 -1.6 -5.6 cobyrinate a,c-diamide synthase compare
PP_1675 -1.6 -8.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3241 -1.6 -2.3 conserved exported protein of unknown function compare
PP_4964 -1.6 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4994 -1.6 -4.4 conserved protein of unknown function compare
PP_0406 -1.6 -2.6 Nucleotidyltransferase family protein compare
PP_1764 -1.6 -3.8 Phosphoglycolate phosphatase 2 compare
PP_1986 -1.6 -2.8 3-isopropylmalate dehydratase small subunit compare
PP_1677 -1.6 -6.2 Adenosyl-cobyric acid synthase compare
PP_4826 -1.6 -6.0 Precorrin-3B C17-methyltransferase compare
PP_1656 -1.6 -5.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0293 -1.5 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1654 -1.5 -3.5 cysteine synthase B compare
PP_5203 -1.5 -5.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_0364 -1.5 -6.4 pimeloyl-[acp] methyl ester esterase compare
PP_0420 -1.5 -6.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0366 -1.4 -5.1 dethiobiotin synthetase compare
PP_4695 -1.4 -7.8 Sensory box histidine kinase compare
PP_0363 -1.4 -9.2 8-amino-7-oxononanoate synthase compare
PP_0547 -1.4 -7.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4984 -1.4 -8.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3417 -1.4 -4.6 D-gluconate transporter compare
PP_5000 -1.4 -2.2 peptidase component of the ATP-dependent HslVU protease compare
PP_0365 -1.4 -7.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0405 -1.3 -7.1 conserved protein of unknown function compare
PP_0393 -1.3 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4902 -1.3 -2.4 Oligoribonuclease compare
PP_1872 -1.3 -8.1 glutamate-pyruvate aminotransferase compare
PP_5093 -1.2 -1.8 twitching motility protein compare
PP_4693 -1.2 -3.1 RNA polymerase-binding transcription factor DksA compare
PP_5090 -1.2 -2.7 putative cell division protein compare
PP_2510 -1.2 -2.4 conserved protein of unknown function compare
PP_1678 -1.2 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1426 -1.2 -8.6 L-aspartate oxidase compare
PP_1655 -1.2 -1.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4004 -1.2 -3.2 DNA translocase FtsK compare
PP_3821 -1.1 -6.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2313 -1.1 -3.0 conserved membrane protein of unknown function compare
PP_4832 -1.1 -4.8 Precorrin-6x reductase compare
PP_1676 -1.1 -3.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3505 -1.1 -1.7 conserved protein of unknown function compare
PP_4943 -1.1 -2.5 putative Glycosyl transferase compare
PP_4989 -1.1 -3.5 Protein PilJ compare
PP_0961 -1.1 -5.6 toluene tolerance protein compare
PP_2070 -1.1 -2.8 Transcriptional regulator, AraC family compare
PP_3946 -1.1 -1.7 HTH-type transcriptional repressor NicR compare
PP_4480 -1.1 -5.9 arginine N-succinyltransferase, subunit alpha compare
PP_0735 -1.1 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_1304 -1.1 -6.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2378 -1.1 -2.0 Fe/S biogenesis protein NfuA compare
PP_5639 -1.1 -4.9 conserved exported protein of unknown function compare
PP_3409 -1.1 -1.9 putative Cobalamin biosynthesis protein cobE compare
PP_1428 -1.0 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_1322 -1.0 -1.9 putative Lipoprotein compare
PP_4936 -1.0 -6.0 O-antigen polymerase compare
PP_0962 -1.0 -2.0 toluene-tolerance protein compare
PP_1269 -1.0 -1.4 Universal stress protein family compare
PP_1011 -1.0 -5.8 glucokinase compare
PP_5104 -1.0 -5.7 thiazole synthase compare
PP_4940 -1.0 -5.5 Putative glycosyltransferase compare
PP_4724 -1.0 -0.7 Carbamoyl-phosphate synthase small chain compare
PP_0960 -1.0 -4.7 phospholipid ABC transporter binding protein compare
PP_2163 -1.0 -4.6 VacJ lipoprotein compare
PP_4938 -0.9 -6.5 putative Glycosyl transferase compare
PP_1664 -0.9 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1110 -0.9 -2.3 serine acetyltransferase compare
PP_4699 -0.9 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5350 -0.9 -2.9 Transcriptional regulator, RpiR family compare
PP_2750 -0.9 -3.0 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1912 -0.9 -3.3 Phosphate acyltransferase compare
PP_3105 -0.9 -2.0 conserved membrane protein of unknown function compare
PP_3806 -0.9 -2.8 Hydrolase, isochorismatase family compare
PP_0673 -0.9 -2.0 conserved protein of unknown function compare
PP_4124 -0.9 -2.8 NADH-quinone oxidoreductase subunit G compare
PP_3649 -0.9 -2.5 Transcriptional regulator, GntR family compare
PP_4268 -0.9 -1.7 nucleoid-associated broad specificity regulator compare
PP_0339 -0.8 -1.2 Pyruvate dehydrogenase E1 component compare
PP_1799 -0.8 -6.2 GDP-mannose 4,6-dehydratase compare
PP_2145 -0.8 -2.2 beta-N-acetylglucosaminidase compare
PP_1013 -0.8 -3.1 Sensor histidine kinase compare
PP_1778 -0.8 -4.3 Lipopolysaccharide ABC export system, permease protein compare
PP_0138 -0.8 -5.8 conserved membrane protein of unknown function compare
PP_1224 -0.8 -4.2 periplasmic subunit of the TolQRA transport system compare
PP_5052 -0.8 -1.8 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_0719 -0.8 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0434 -0.8 -2.4 Anhydro-N-acetylmuramic acid kinase compare
PP_0725 -0.8 -3.0 conserved hypothetical TPR repeat protein compare
PP_2903 -0.8 -1.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5017 -0.8 -1.1 Sec-independent protein translocase protein TatB compare
PP_1303 -0.8 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_0848 -0.8 -1.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4254 -0.8 -1.5 conserved protein of unknown function compare
PP_0232 -0.8 -1.3 ATP-binding taurine transporter subunit compare
PP_1233 -0.8 -2.7 sulfurtransferase compare
PP_3904 -0.8 -2.9 conserved protein of unknown function compare
PP_5320 -0.8 -4.1 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_1018 -0.8 -4.6 mannose/glucose ABC transporter - ATP binding subunit compare
PP_4875 -0.8 -2.7 conserved membrane protein of unknown function compare
PP_3880 -0.8 -1.5 conserved exported protein of unknown function compare
PP_1779 -0.8 -4.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1355 -0.8 -4.5 Muropeptide permease AmpG compare
PP_1362 -0.8 -1.9 pyruvate kinase II compare
PP_2032 -0.7 -4.1 putative ATPase compare
PP_5230 -0.7 -1.6 Tyrosine recombinase XerC compare
PP_1216 -0.7 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5015 -0.7 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4782 -0.7 -2.5 Phosphomethylpyrimidine kinase compare
PP_5628 -0.7 -1.5 conserved protein of unknown function compare
PP_2857 -0.7 -2.0 conserved exported protein of unknown function compare
PP_0653 -0.7 -1.3 conserved protein of unknown function compare
PP_1780 -0.7 -6.6 putative mannosyltransferase compare
PP_0888 -0.7 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_0566 -0.7 -1.1 translation-related factor compare
PP_1217 -0.7 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2000 -0.7 -0.8 amidophosphoribosyl transferase compare
PP_3541 -0.7 -1.9 Transporter, MgtC family compare
PP_4477 -0.7 -3.7 N-succinylarginine dihydrolase compare
PP_4874 -0.7 -0.9 50S ribosomal protein L9 compare
PP_1348 -0.7 -3.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5706 -0.7 -1.3 Sec translocation complex - SecG subunit compare
PP_4824 -0.7 -3.1 Sensor histidine kinase/response regulator compare
PP_3539 -0.7 -1.0 putative Transcriptional regulator compare
PP_4126 -0.7 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_4988 -0.7 -3.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1430 -0.7 -3.6 putative periplasmic serine endoprotease DegP-like compare
PP_0852 -0.7 -2.7 Transcriptional regulator, Cro/CI family compare
PP_4199 -0.7 -1.0 putative Lipoprotein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms