Experiment set19IT015 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27795 -4.5 -1.4 orotate phosphoribosyltransferase compare
PS417_01915 -4.1 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21575 -3.8 -9.7 chemotaxis protein compare
PS417_02280 -3.7 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_04365 -3.1 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_18310 -3.1 -2.7 hypothetical protein compare
PS417_08125 -2.8 -0.9 prephenate dehydratase compare
PS417_20985 -2.6 -2.6 porin compare
PS417_27040 -2.5 -3.0 3-phosphoglycerate dehydrogenase compare
PS417_27800 -2.4 -3.2 exodeoxyribonuclease III compare
PS417_02415 -2.3 -3.4 phosphoserine phosphatase compare
PS417_22565 -2.3 -1.3 formyltetrahydrofolate deformylase compare
PS417_23950 -2.3 -2.5 polynucleotide phosphorylase/polyadenylase compare
PS417_03260 -2.3 -1.7 5S ribosomal RNA compare
PS417_19650 -2.3 -4.8 chemotaxis protein CheW compare
PS417_16555 -2.3 -2.3 cupin compare
PS417_19690 -2.2 -7.7 histidine kinase compare
PS417_24585 -2.2 -8.2 AMP nucleosidase compare
PS417_23545 -2.2 -2.1 gamma-glutamyl kinase compare
PS417_08730 -2.2 -1.9 cytochrome C compare
PS417_01855 -2.1 -3.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_04375 -2.1 -2.8 ABC transporter ATP-binding protein compare
PS417_19955 -2.0 -2.0 hypothetical protein compare
PS417_04595 -2.0 -2.7 cell division protein MraZ compare
PS417_26695 -2.0 -1.5 uracil phosphoribosyltransferase compare
PS417_06680 -2.0 -6.7 nuclease PIN compare
PS417_04650 -1.9 -1.1 D-alanine--D-alanine ligase compare
PS417_01560 -1.9 -2.7 imidazoleglycerol-phosphate dehydratase compare
PS417_08135 -1.9 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_10015 -1.9 -1.4 hypothetical protein compare
PS417_22445 -1.9 -3.9 ATP-dependent DNA helicase RuvB compare
PS417_22570 -1.8 -1.1 H-NS histone compare
PS417_19660 -1.8 -4.5 cobalamin biosynthesis protein CobQ compare
PS417_08540 -1.8 -2.8 RNA helicase compare
PS417_19655 -1.8 -3.7 chemotaxis protein CheW compare
PS417_24460 -1.8 -1.9 hypothetical protein compare
PS417_23025 -1.8 -5.9 murein transglycosylase compare
PS417_23995 -1.8 -0.9 preprotein translocase subunit SecG compare
PS417_27425 -1.8 -7.3 exopolyphosphatase compare
PS417_19870 -1.7 -5.2 flagellar rod assembly protein FlgJ compare
PS417_23770 -1.7 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_24155 -1.7 -1.6 ATP-binding protein compare
PS417_23810 -1.7 -7.9 acetolactate synthase 3 catalytic subunit compare
PS417_02575 -1.7 -3.3 membrane protein compare
PS417_26730 -1.7 -1.0 pyrroline-5-carboxylate reductase compare
PS417_27195 -1.7 -1.6 N-acetylglutamate synthase compare
PS417_19675 -1.7 -4.3 chemotaxis protein CheY compare
PS417_23805 -1.7 -4.1 acetolactate synthase 3 regulatory subunit compare
PS417_18560 -1.7 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26985 -1.7 -2.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19865 -1.6 -7.4 flagellar hook protein FlgK compare
PS417_19665 -1.6 -3.8 flagellar motor protein MotD compare
PS417_19860 -1.6 -11.5 flagellar hook protein FlgL compare
PS417_00180 -1.6 -2.6 tryptophan synthase subunit alpha compare
PS417_27135 -1.6 -1.0 glutamine synthetase compare
PS417_21570 -1.6 -5.1 flagellar basal body rod protein FlgB compare
PS417_24745 -1.6 -2.5 gamma-glutamyl phosphate reductase compare
PS417_15110 -1.6 -5.2 protein BatD compare
PS417_02000 -1.5 -8.6 glutamate synthase compare
PS417_19840 -1.5 -9.1 flagellar cap protein FliD compare
PS417_00510 -1.5 -1.1 membrane protein compare
PS417_26530 -1.5 -1.6 hypothetical protein compare
PS417_21595 -1.5 -4.3 flagellar biosynthesis protein FlgN compare
PS417_06710 -1.5 -2.0 beta-ketoadipyl CoA thiolase compare
PS417_00370 -1.5 -1.2 hypothetical protein compare
PS417_19850 -1.5 -7.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_02980 -1.5 -1.3 chemotaxis protein compare
PS417_26770 -1.5 -1.8 tRNA (guanine-N7)-methyltransferase compare
PS417_08155 -1.5 -1.2 integration host factor subunit beta compare
PS417_00175 -1.5 -1.3 CigR compare
PS417_27865 -1.5 -2.7 LysR family transcriptional regulator compare
PS417_27300 -1.5 -0.9 cell division protein ZapA compare
PS417_19735 -1.5 -3.6 flagellar biosynthesis protein FliQ compare
PS417_05815 -1.5 -2.8 recombinase RecA compare
PS417_19695 -1.4 -8.4 flagellar biosynthesis sigma factor compare
PS417_15105 -1.4 -5.5 membrane protein compare
PS417_02975 -1.4 -4.0 3-dehydroquinate dehydratase compare
PS417_05635 -1.4 -5.8 membrane protein compare
PS417_17440 -1.4 -2.1 beta-lactamase compare
PS417_21565 -1.4 -4.1 flagellar basal body rod protein FlgC compare
PS417_21555 -1.4 -7.9 flagellar hook protein FlgE compare
PS417_15085 -1.4 -3.6 ATPase AAA compare
PS417_12855 -1.4 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24705 -1.4 -2.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_19880 -1.4 -5.2 flagellar basal body L-ring protein compare
PS417_19765 -1.4 -5.9 flagellar hook-length control protein compare
PS417_15480 -1.3 -2.0 ABC transporter substrate-binding protein compare
PS417_27870 -1.3 -2.3 ATP-dependent DNA helicase RecG compare
PS417_02555 -1.3 -7.5 exoribonuclease R compare
PS417_05365 -1.3 -1.3 FAD-binding protein compare
PS417_20025 -1.3 -1.7 alpha-ribazole phosphatase compare
PS417_19730 -1.3 -4.3 flagellar biosynthesis protein FliR compare
PS417_19745 -1.3 -5.5 flagellar assembly protein FliO compare
PS417_19885 -1.3 -2.7 flagellar basal body rod protein FlgG compare
PS417_15090 -1.3 -2.4 hypothetical protein compare
PS417_18885 -1.2 -1.8 GntR family transcriptional regulator compare
PS417_01435 -1.2 -1.2 hypothetical protein compare
PS417_19350 -1.2 -3.7 GTP cyclohydrolase compare
PS417_19795 -1.2 -6.4 flagellar assembly protein FliH compare
PS417_03045 -1.2 -1.7 hypothetical protein compare
PS417_21630 -1.2 -2.6 magnesium transporter compare
PS417_19710 -1.2 -7.8 flagellar biosynthesis protein FlhA compare
PS417_19725 -1.2 -4.1 flagellar biosynthesis protein FlhB compare
PS417_20160 -1.2 -2.4 cysteine synthase compare
PS417_03525 -1.2 -1.6 hypothetical protein compare
PS417_19825 -1.2 -8.1 ATPase AAA compare
PS417_02005 -1.2 -5.3 glutamate synthase compare
PS417_08545 -1.2 -1.3 aromatic ring-opening dioxygenase LigB compare
PS417_01635 -1.1 -4.0 nitrogen regulation protein NR(I) compare
PS417_00755 -1.1 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_11475 -1.1 -2.6 membrane protein compare
PS417_05535 -1.1 -1.7 Fis family transcriptional regulator compare
PS417_02485 -1.1 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_25715 -1.1 -3.3 anthranilate phosphoribosyltransferase compare
PS417_28070 -1.1 -4.6 phosphate ABC transporter ATP-binding protein compare
PS417_07400 -1.1 -2.7 hypothetical protein compare
PS417_15465 -1.1 -2.8 carboxynorspermidine decarboxylase compare
PS417_00185 -1.1 -2.1 tryptophan synthase subunit beta compare
PS417_21510 -1.1 -1.6 histidine kinase compare
PS417_07620 -1.0 -1.6 beta-hexosaminidase compare
PS417_21655 -1.0 -1.1 aspartate kinase compare
PS417_12805 -1.0 -6.1 glycogen branching protein compare
PS417_07640 -1.0 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23160 -1.0 -1.7 50S rRNA methyltransferase compare
PS417_16005 -1.0 -2.2 ATPase compare
PS417_18595 -1.0 -2.3 3-isopropylmalate dehydratase compare
PS417_26370 -1.0 -3.0 RNA helicase compare
PS417_21585 -1.0 -3.9 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_08170 -1.0 -5.5 capsular biosynthesis protein compare
PS417_26365 -1.0 -2.2 EmrB/QacA subfamily drug resistance transporter compare
PS417_06685 -1.0 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_19835 -1.0 -1.0 flagellar biosynthesis protein FliS compare
PS417_06045 -1.0 -2.6 membrane protein compare
PS417_00045 -1.0 -1.6 glycerol acyltransferase compare
PS417_08410 -1.0 -2.2 hypothetical protein compare
PS417_22630 -1.0 -1.6 hypothetical protein compare
PS417_00085 -1.0 -1.4 16S rRNA methyltransferase compare
PS417_13185 -1.0 -1.7 RND transporter compare
PS417_19740 -1.0 -4.5 flagellar biosynthesis protein flip compare
PS417_06845 -1.0 -1.4 lipoprotein compare
PS417_16465 -0.9 -4.8 sirohydrochlorin ferrochelatase compare
PS417_23800 -0.9 -4.7 ketol-acid reductoisomerase compare
PS417_21560 -0.9 -2.8 flagellar basal body rod modification protein FlgD compare
PS417_16510 -0.9 -2.9 Clp protease ClpX compare
PS417_27245 -0.9 -2.9 aminotransferase DegT compare
PS417_28080 -0.9 -6.4 phosphate ABC transporter permease compare
PS417_07710 -0.9 -3.2 membrane protein compare
PS417_02880 -0.9 -1.4 copper chaperone compare
PS417_04705 -0.9 -1.8 hypothetical protein compare
PS417_07565 -0.9 -1.5 hypothetical protein compare
PS417_04305 -0.9 -1.1 aspartate ammonia-lyase compare
PS417_18755 -0.9 -1.6 CrtK compare
PS417_22935 -0.9 -2.0 hypothetical protein compare
PS417_19785 -0.9 -2.0 flagellar biogenesis protein compare
PS417_09915 -0.9 -1.2 hypothetical protein compare
PS417_13425 -0.9 -1.5 cupin compare
PS417_15095 -0.9 -1.4 hypothetical protein compare
PS417_12310 -0.9 -3.3 methionine synthase compare
PS417_04390 -0.9 -1.9 toluene tolerance protein compare
PS417_19420 -0.9 -2.2 OHCU decarboxylase compare
PS417_15820 -0.9 -2.3 universal stress protein UspA compare
PS417_13305 -0.8 -1.2 hypothetical protein compare
PS417_07615 -0.8 -2.6 TetR family transcriptional regulator compare
PS417_15495 -0.8 -2.5 FAD-dependent oxidoreductase compare
PS417_12290 -0.8 -3.1 sulfite reductase compare
PS417_18545 -0.8 -1.9 cell division protein compare
PS417_24525 -0.8 -1.5 nuclease compare
PS417_25725 -0.8 -5.8 anthranilate synthase component I compare
PS417_26335 -0.8 -1.9 BetI family transcriptional regulator compare
PS417_19830 -0.8 -3.2 flagellar assembly protein FliT compare
PS417_28450 -0.8 -1.1 XRE family transcriptional regulator compare
PS417_24500 -0.8 -1.3 DEAD/DEAH box helicase compare
PS417_22855 -0.8 -1.5 ssDNA exonuclease RecJ compare
PS417_01640 -0.8 -3.2 histidine kinase compare
PS417_10130 -0.8 -2.6 hypothetical protein compare
PS417_10265 -0.8 -2.2 peptidase compare
PS417_06205 -0.8 -4.1 methionine aminopeptidase compare
PS417_19800 -0.8 -1.7 flagellar motor switch protein FliG compare
PS417_07875 -0.8 -0.7 hypothetical protein compare
PS417_22520 -0.8 -1.3 histidine kinase compare
PS417_17450 -0.8 -2.4 amino acid ABC transporter substrate-binding protein compare
PS417_11530 -0.8 -1.5 amidase compare
PS417_04385 -0.8 -1.6 organic solvent ABC transporter substrate-binding protein compare
PS417_24605 -0.8 -1.9 thiamine-phosphate pyrophosphorylase compare
PS417_26120 -0.8 -0.8 hypothetical protein compare
PS417_19755 -0.7 -1.5 flagellar motor switch protein FliM compare
PS417_09150 -0.7 -1.1 energy transducer TonB compare
PS417_02950 -0.7 -1.2 tRNA-dihydrouridine synthase B compare
PS417_08090 -0.7 -0.4 3-oxoacyl-ACP reductase compare
PS417_20855 -0.7 -0.9 hypothetical protein compare
PS417_12910 -0.7 -2.4 alanine racemase compare
PS417_06200 -0.7 -3.5 protein-PII uridylyltransferase compare
PS417_22175 -0.7 -1.1 amino acid transporter LysE compare
PS417_08025 -0.7 -1.0 acetylornithine aminotransferase compare
PS417_05160 -0.7 -0.5 DNA polymerase III subunit chi compare
PS417_15125 -0.7 -1.6 glutathione S-transferase compare
PS417_01575 -0.7 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -0.7 -1.3 isopropylmalate isomerase compare
PS417_25840 -0.7 -3.9 SpoVR family protein compare
PS417_02510 -0.7 -1.4 ATP phosphoribosyltransferase regulatory subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments