Experiment set19IT015 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_30

200 most important genes:

  gene name fitness t score description  
PP_0292 -4.8 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -4.1 -10.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5155 -4.0 -6.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1079 -3.9 -7.0 Ornithine carbamoyltransferase compare
PP_1898 -3.7 -4.8 MotA/TolQ/ExbB proton channel family protein compare
PP_5347 -3.3 -11.2 pyruvate carboxylase subunit A compare
PP_5097 -3.3 -11.5 homoserine O-acetyltransferase compare
PP_0966 -3.2 -10.4 Histidinol dehydrogenase compare
PP_2168 -3.1 -9.6 Transaldolase compare
PP_2001 -3.1 -9.6 O-succinylhomoserine sulfhydrylase compare
PP_0082 -3.1 -5.9 tryptophan synthase alpha chain compare
PP_3417 -3.0 -6.5 D-gluconate transporter compare
PP_4804 -3.0 -2.0 RlpA-like lipoprotein compare
PP_0184 -2.9 -7.0 Argininosuccinate lyase compare
PP_5348 -2.9 -8.0 Transcriptional regulator, LysR family compare
PP_5015 -2.9 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0083 -2.9 -7.2 tryptophan synthase beta chain compare
PP_4678 -2.9 -11.1 Ketol-acid reductoisomerase compare
PP_5346 -2.9 -8.1 pyruvate carboxylase subunit B compare
PP_1988 -2.9 -7.7 3-isopropylmalate dehydrogenase compare
PP_5303 -2.8 -6.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3511 -2.7 -7.1 Branched-chain-amino-acid aminotransferase compare
PP_5185 -2.7 -5.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5098 -2.7 -7.1 methionine biosynthesis protein MetW compare
PP_4680 -2.7 -10.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -2.6 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_0422 -2.5 -3.4 Indole-3-glycerol phosphate synthase compare
PP_0965 -2.5 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5505 -2.5 -4.0 conserved transmembrane protein of unknown function compare
PP_0289 -2.4 -6.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5289 -2.4 -3.5 Acetylglutamate kinase compare
PP_0291 -2.3 -4.5 conserved protein of unknown function compare
PP_4909 -2.3 -6.3 phosphoserine phosphatase compare
PP_4785 -2.2 -5.8 conserved exported protein of unknown function compare
PP_2371 -2.2 -4.4 Sulphite reductase hemoprotein, beta subunit compare
PP_0293 -2.2 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3999 -2.2 -6.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5128 -2.2 -6.3 Dihydroxy-acid dehydratase compare
PP_2327 -2.1 -5.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0232 -2.1 -1.7 ATP-binding taurine transporter subunit compare
PP_0406 -2.1 -3.2 Nucleotidyltransferase family protein compare
PP_1025 -2.1 -9.3 2-isopropylmalate synthase compare
PP_4696 -2.1 -4.7 Nitrogen regulation protein NR(I) compare
PP_1985 -2.1 -2.3 3-isopropylmalate dehydratase large subunit compare
PP_5014 -2.0 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_1022 -2.0 -3.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1986 -2.0 -2.7 3-isopropylmalate dehydratase small subunit compare
PP_0362 -2.0 -8.0 Biotin synthase compare
PP_1995 -2.0 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -2.0 -7.5 Argininosuccinate synthase compare
PP_0290 -2.0 -4.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_t12 -2.0 -1.4 tRNA-Thr compare
PP_1672 -1.9 -6.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0377 -1.9 -2.4 coenzyme PQQ synthesis protein D compare
PP_5217 -1.9 -8.1 Polyphosphate kinase compare
PP_4679 -1.8 -3.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0593 -1.8 -1.3 putative ribosome-binding factor compare
PP_2328 -1.8 -4.8 Phosphoadenosine phosphosulfate reductase compare
PP_0421 -1.8 -6.0 Anthranilate phosphoribosyltransferase compare
PP_2370 -1.7 -3.4 conserved protein of unknown function compare
PP_0417 -1.7 -10.2 Anthranilate synthase component 1 compare
PP_0087 -1.7 -2.7 conserved exported protein of unknown function compare
PP_5203 -1.6 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_4984 -1.6 -6.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1654 -1.6 -2.4 cysteine synthase B compare
PP_2145 -1.6 -2.4 beta-N-acetylglucosaminidase compare
PP_1231 -1.6 -4.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1362 -1.5 -3.0 pyruvate kinase II compare
PP_2402 -1.5 -1.9 putative Sensor histidine kinase compare
PP_4994 -1.5 -3.3 conserved protein of unknown function compare
PP_0420 -1.5 -6.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4480 -1.5 -5.7 arginine N-succinyltransferase, subunit alpha compare
PP_1269 -1.5 -1.3 Universal stress protein family compare
PP_2862 -1.5 -4.6 Undecaprenyl-diphosphatase compare
PP_4150 -1.5 -4.5 microcin C transporter - ATP binding subunit compare
PP_4977 -1.5 -6.8 5,10-methylenetetrahydrofolate reductase compare
PP_4120 -1.4 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_4701 -1.4 -1.1 glucose-6-phosphate isomerase compare
PP_4122 -1.4 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4936 -1.4 -5.1 O-antigen polymerase compare
PP_0363 -1.4 -6.0 8-amino-7-oxononanoate synthase compare
PP_1553 -1.3 -1.7 conserved protein of unknown function compare
PP_3891 -1.3 -2.1 conserved protein of unknown function compare
PP_1872 -1.3 -4.8 glutamate-pyruvate aminotransferase compare
PP_2087 -1.3 -3.0 CmpX protein compare
PP_2044 -1.3 -1.3 conserved inner membrane protein of unknown function compare
PP_5095 -1.3 -0.8 pyrroline-5-carboxylate reductase compare
PP_4329 -1.2 -2.2 FlhB domain protein compare
PP_1679 -1.2 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1733 -1.2 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_1304 -1.2 -5.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0801 -1.2 -1.2 conserved exported protein of unknown function compare
PP_3532 -1.2 -1.8 Transcriptional regulator, AsnC family compare
PP_3312 -1.2 -1.5 putative Heat shock protein compare
PP_0653 -1.2 -1.3 conserved protein of unknown function compare
PP_2163 -1.1 -4.3 VacJ lipoprotein compare
PP_3637 -1.1 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4131 -1.1 -3.1 NADH-quinone oxidoreductase subunit N compare
PP_0735 -1.1 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_3505 -1.1 -1.7 conserved protein of unknown function compare
PP_3903 -1.1 -1.5 conserved protein of unknown function compare
PP_5571 -1.1 -1.3 conserved protein of unknown function compare
PP_2631 -1.1 -1.7 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2375 -1.1 -5.9 cobalamin-dependent methionine synthase compare
PP_5487 -1.1 -2.7 conserved protein of unknown function compare
PP_2459 -1.1 -3.0 ribose pyranase compare
PP_4830 -1.1 -3.0 precorrin-6Y C(5,15)-methyltransferase compare
PP_4902 -1.1 -1.9 Oligoribonuclease compare
PP_4961 -1.1 -1.6 putative Lipoprotein compare
PP_5SB -1.1 -2.6 5S ribosomal RNA compare
PP_1198 -1.1 -1.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5639 -1.1 -4.0 conserved exported protein of unknown function compare
PP_4700 -1.1 -1.0 pantothenate synthetase compare
PP_0434 -1.1 -2.9 Anhydro-N-acetylmuramic acid kinase compare
PP_4738 -1.1 -1.8 conserved exported protein of unknown function compare
PP_1011 -1.1 -5.0 glucokinase compare
PP_0547 -1.1 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1142 -1.1 -0.9 conserved protein of unknown function compare
PP_5575 -1.1 -1.7 conserved protein of unknown function compare
PP_1892 -1.1 -1.8 conserved protein of unknown function compare
PP_0365 -1.1 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2575 -1.0 -1.6 conserved exported protein of unknown function compare
PP_4786 -1.0 -3.8 conserved protein of unknown function compare
PP_1054 -1.0 -1.3 Type II secretion pathway protein XcpZ compare
PP_5007 -1.0 -1.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4124 -1.0 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_5661 -1.0 -2.8 putative lipoprotein compare
PP_0888 -1.0 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_1017 -1.0 -3.9 mannose/glucose ABC transporter, permease protein compare
PP_5350 -1.0 -2.1 Transcriptional regulator, RpiR family compare
PP_0001 -1.0 -1.4 probable chromosome-partitioning protein compare
PP_5035 -1.0 -4.4 Histidine utilization repressor compare
PP_1673 -1.0 -3.3 cobyrinate a,c-diamide synthase compare
PP_4223 -1.0 -1.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_3880 -0.9 -1.3 conserved exported protein of unknown function compare
PP_0961 -0.9 -3.6 toluene tolerance protein compare
PP_1739 -0.9 -2.3 conserved membrane protein of unknown function compare
PP_2403 -0.9 -1.3 Chemotaxis protein CheY compare
PP_t29 -0.9 -1.6 tRNA-Ala compare
PP_0787 -0.9 -1.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0126 -0.9 -2.0 Cytochrome c4 compare
PP_1674 -0.9 -2.9 5,6-dimethylbenzimidazole synthase compare
PP_1355 -0.9 -3.6 Muropeptide permease AmpG compare
PP_3821 -0.9 -5.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4534 -0.9 -2.3 conserved protein of unknown function compare
PP_4827 -0.9 -4.6 Precorrin-2 C(20)-methyltransferase compare
PP_1864 -0.9 -1.2 conserved protein of unknown function compare
PP_0065 -0.9 -2.1 NAD-binding component of TrK potassium transporter compare
PP_5100 -0.9 -1.7 dITP/XTP pyrophosphatase compare
PP_4940 -0.9 -4.2 Putative glycosyltransferase compare
PP_4556 -0.9 -2.2 conserved protein of unknown function compare
PP_3824 -0.9 -1.7 conserved exported protein of unknown function compare
PP_0366 -0.8 -2.2 dethiobiotin synthetase compare
PP_3682 -0.8 -2.0 conserved protein of unknown function compare
PP_4941 -0.8 -3.0 conserved exported protein of unknown function compare
PP_1742 -0.8 -2.5 conserved inner membrane protein of unknown function compare
PP_0630 -0.8 -0.9 DNA gyrase inhibitor YacG compare
PP_1770 -0.8 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4938 -0.8 -4.5 putative Glycosyl transferase compare
PP_5507 -0.8 -2.2 protein of unknown function compare
PP_4699 -0.8 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1018 -0.8 -3.3 mannose/glucose ABC transporter - ATP binding subunit compare
PP_2345 -0.8 -2.4 conserved exported protein of unknown function compare
PP_0364 -0.8 -3.3 pimeloyl-[acp] methyl ester esterase compare
PP_3164 -0.8 -2.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_5241 -0.8 -0.9 DNA-binding response regulator, LuxR family compare
PP_2513 -0.8 -1.9 4-oxalomesaconate tautomerase compare
PP_5610 -0.8 -1.5 protein of unknown function compare
PP_4993 -0.8 -2.1 Glutathione synthetase compare
PP_1912 -0.8 -2.0 Phosphate acyltransferase compare
PP_4988 -0.8 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0978 -0.8 -1.7 conserved protein of unknown function compare
PP_0900 -0.8 -2.0 PAP2 family protein compare
PP_5104 -0.8 -3.3 thiazole synthase compare
PP_5320 -0.8 -3.7 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_2032 -0.8 -2.9 putative ATPase compare
PP_1015 -0.8 -3.1 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_4797 -0.8 -1.5 conserved protein of unknown function compare
PP_3411 -0.8 -1.2 conserved protein of unknown function compare
PP_2088 -0.8 -1.6 RNA polymerase sigma factor SigX compare
PP_0405 -0.8 -3.8 conserved protein of unknown function compare
PP_1731 -0.8 -1.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1632 -0.8 -1.1 conserved protein of unknown function compare
PP_3840 -0.8 -1.0 conserved protein of unknown function compare
PP_4340 -0.8 -1.2 response regulator for chemotactic signal transduction compare
PP_2857 -0.8 -1.0 conserved exported protein of unknown function compare
PP_0062 -0.8 -1.9 3-methyl-adenine DNA glycosylase I compare
PP_3295 -0.7 -1.9 YeeE/YedE family protein compare
PP_3507 -0.7 -4.6 Aerobic cobaltochelatase subunit CobN compare
PP_2650 -0.7 -1.2 putative 4-hydroxybutyrate dehydrogenase compare
PP_3509 -0.7 -2.2 Glyoxalase family protein compare
PP_0628 -0.7 -1.7 conserved protein of unknown function compare
PP_0725 -0.7 -2.3 conserved hypothetical TPR repeat protein compare
PP_4829 -0.7 -2.2 putative precorrin-3B synthase compare
PP_5270 -0.7 -2.5 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0164 -0.7 -2.1 conserved protein of unknown function compare
PP_5609 -0.7 -1.6 conserved protein of unknown function compare
PP_4751 -0.7 -2.9 Amino acid ABC transporter, ATP-binding protein compare
PP_4320 -0.7 -2.7 cytochrome c-type biogenesis protein compare
PP_0673 -0.7 -1.3 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms