Experiment set19IT014 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_30

200 most important genes:

  gene name fitness t score description  
PP_1079 -4.1 -6.8 Ornithine carbamoyltransferase compare
PP_0082 -3.9 -6.0 tryptophan synthase alpha chain compare
PP_0967 -3.9 -9.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5346 -3.8 -8.8 pyruvate carboxylase subunit B compare
PP_5014 -3.8 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_2371 -3.7 -6.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1898 -3.5 -3.8 MotA/TolQ/ExbB proton channel family protein compare
PP_2168 -3.4 -10.3 Transaldolase compare
PP_0292 -3.4 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -3.3 -8.2 3-isopropylmalate dehydrogenase compare
PP_1088 -3.2 -10.6 Argininosuccinate synthase compare
PP_4696 -3.1 -4.2 Nitrogen regulation protein NR(I) compare
PP_1381 -3.1 -1.8 4-carboxymuconolactone decarboxylase compare
PP_5097 -3.0 -11.1 homoserine O-acetyltransferase compare
PP_4678 -3.0 -12.6 Ketol-acid reductoisomerase compare
PP_0966 -3.0 -9.7 Histidinol dehydrogenase compare
PP_5098 -2.9 -6.6 methionine biosynthesis protein MetW compare
PP_4680 -2.9 -12.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -2.9 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4804 -2.8 -2.0 RlpA-like lipoprotein compare
PP_5128 -2.8 -7.2 Dihydroxy-acid dehydratase compare
PP_0289 -2.8 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4890 -2.7 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_1215 -2.7 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_5185 -2.7 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3999 -2.7 -5.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4909 -2.6 -6.1 phosphoserine phosphatase compare
PP_0083 -2.6 -5.2 tryptophan synthase beta chain compare
PP_5225 -2.6 -1.9 frataxin compare
PP_3511 -2.5 -6.5 Branched-chain-amino-acid aminotransferase compare
PP_0965 -2.4 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0959 -2.4 -2.6 phospholipid ABC transporter compare
PP_5348 -2.4 -6.6 Transcriptional regulator, LysR family compare
PP_1733 -2.3 -3.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_2001 -2.3 -6.0 O-succinylhomoserine sulfhydrylase compare
PP_5347 -2.3 -8.1 pyruvate carboxylase subunit A compare
PP_5289 -2.2 -2.7 Acetylglutamate kinase compare
PP_1528 -2.2 -2.1 conserved protein of unknown function compare
PP_0422 -2.2 -4.6 Indole-3-glycerol phosphate synthase compare
PP_1022 -2.2 -3.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4828 -2.2 -1.5 Precorrin-8X methylmutase compare
PP_0164 -2.2 -5.5 conserved protein of unknown function compare
PP_0184 -2.2 -6.2 Argininosuccinate lyase compare
PP_2402 -2.1 -2.0 putative Sensor histidine kinase compare
PP_1986 -2.1 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_4707 -2.1 -1.4 OsmY-related protein compare
PP_0630 -2.1 -1.5 DNA gyrase inhibitor YacG compare
PP_0888 -2.1 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_0290 -2.1 -4.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1995 -2.1 -5.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0291 -2.0 -2.9 conserved protein of unknown function compare
PP_5217 -2.0 -8.6 Polyphosphate kinase compare
PP_0232 -2.0 -1.7 ATP-binding taurine transporter subunit compare
PP_1553 -2.0 -1.8 conserved protein of unknown function compare
PP_4679 -1.9 -4.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0627 -1.9 -2.0 conserved protein of unknown function compare
PP_1654 -1.9 -2.2 cysteine synthase B compare
PP_1020 -1.8 -1.8 putative glucose-6-phosphate 1-epimerase compare
PP_2370 -1.8 -2.8 conserved protein of unknown function compare
PP_4785 -1.7 -6.4 conserved exported protein of unknown function compare
PP_5155 -1.7 -3.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2328 -1.7 -5.0 Phosphoadenosine phosphosulfate reductase compare
PP_1025 -1.7 -7.7 2-isopropylmalate synthase compare
PP_0417 -1.7 -9.7 Anthranilate synthase component 1 compare
PP_4701 -1.7 -1.2 glucose-6-phosphate isomerase compare
PP_3417 -1.7 -3.5 D-gluconate transporter compare
PP_5610 -1.7 -1.9 protein of unknown function compare
PP_0366 -1.7 -6.1 dethiobiotin synthetase compare
PP_3198 -1.6 -2.3 Ferredoxin, 2Fe-2S compare
PP_4902 -1.6 -2.4 Oligoribonuclease compare
PP_2145 -1.6 -2.6 beta-N-acetylglucosaminidase compare
PP_1763 -1.6 -3.0 putative oxidoreductase compare
PP_1872 -1.6 -5.8 glutamate-pyruvate aminotransferase compare
PP_2327 -1.6 -4.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4994 -1.5 -3.6 conserved protein of unknown function compare
PP_1231 -1.5 -5.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0420 -1.5 -7.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -1.5 -4.5 Anthranilate phosphoribosyltransferase compare
PP_0363 -1.5 -6.4 8-amino-7-oxononanoate synthase compare
PP_0962 -1.5 -2.5 toluene-tolerance protein compare
PP_0434 -1.5 -3.5 Anhydro-N-acetylmuramic acid kinase compare
PP_4480 -1.5 -5.2 arginine N-succinyltransferase, subunit alpha compare
PP_4528 -1.4 -1.3 conserved protein of unknown function compare
PP_0957 -1.4 -2.0 D-arabinose 5-phosphate isomerase compare
PP_4517 -1.4 -1.2 conserved protein of unknown function compare
PP_0362 -1.4 -7.2 Biotin synthase compare
PP_1554 -1.4 -2.9 conserved protein of unknown function compare
PP_4936 -1.4 -5.7 O-antigen polymerase compare
PP_1985 -1.4 -2.1 3-isopropylmalate dehydratase large subunit compare
PP_4793 -1.4 -1.7 conserved protein of unknown function compare
PP_0364 -1.4 -5.5 pimeloyl-[acp] methyl ester esterase compare
PP_5015 -1.4 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0406 -1.3 -2.5 Nucleotidyltransferase family protein compare
PP_0643 -1.3 -2.6 protein of unknown function compare
PP_4984 -1.3 -4.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0365 -1.3 -4.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3539 -1.3 -1.8 putative Transcriptional regulator compare
PP_1038 -1.3 -1.9 conserved protein of unknown function compare
PP_1503 -1.2 -1.6 conserved protein of unknown function compare
PP_1568 -1.2 -1.3 conserved protein of unknown function compare
PP_1011 -1.2 -4.7 glucokinase compare
PP_3110 -1.2 -2.1 protein of unknown function compare
PP_1198 -1.2 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2862 -1.2 -4.1 Undecaprenyl-diphosphatase compare
PP_0874 -1.2 -2.3 conserved protein of unknown function compare
PP_5203 -1.2 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PP_5095 -1.2 -0.8 pyrroline-5-carboxylate reductase compare
PP_1922 -1.2 -3.3 conserved protein of unknown function compare
PP_1672 -1.2 -4.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0547 -1.2 -4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1673 -1.1 -3.2 cobyrinate a,c-diamide synthase compare
PP_3384 -1.1 -2.7 gluconate 2-dehydrogenase gamma subunit compare
PP_2345 -1.1 -2.1 conserved exported protein of unknown function compare
PP_0787 -1.1 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1303 -1.1 -3.0 Sulfate adenylyltransferase subunit 2 compare
PP_5303 -1.1 -2.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4940 -1.1 -5.3 Putative glycosyltransferase compare
PP_1825 -1.1 -1.9 conserved exported protein of unknown function compare
PP_5310 -1.1 -3.5 junction-specific ATP-dependent DNA helicase compare
PP_4329 -1.0 -1.5 FlhB domain protein compare
PP_3637 -1.0 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_t12 -1.0 -0.9 tRNA-Thr compare
PP_5639 -1.0 -4.3 conserved exported protein of unknown function compare
PP_4058 -1.0 -4.9 1,4-alpha-glucan branching enzyme compare
PP_5090 -1.0 -2.4 putative cell division protein compare
PP_1224 -1.0 -3.3 periplasmic subunit of the TolQRA transport system compare
PP_4660 -1.0 -2.1 Transcriptional regulator, LysR family compare
PP_0381 -1.0 -4.6 Coenzyme PQQ synthesis protein F compare
PP_1015 -1.0 -4.3 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5507 -1.0 -2.4 protein of unknown function compare
PP_4977 -1.0 -5.5 5,10-methylenetetrahydrofolate reductase compare
PP_4260 -1.0 -2.0 conserved protein of unknown function compare
PP_5093 -1.0 -1.2 twitching motility protein compare
PP_4695 -1.0 -5.4 Sensory box histidine kinase compare
PP_2432 -1.0 -3.7 6,7-dihydropteridine reductase compare
PP_3506 -1.0 -2.5 Magnesium chelatase, subunit ChII compare
PP_3946 -1.0 -1.3 HTH-type transcriptional repressor NicR compare
PP_3891 -0.9 -1.9 conserved protein of unknown function compare
PP_3938 -0.9 -1.4 conserved protein of unknown function compare
PP_2903 -0.9 -0.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2722 -0.9 -2.5 conserved protein of unknown function compare
PP_1826 -0.9 -1.0 Hydrolase, isochorismatase family compare
PP_3821 -0.9 -5.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4891 -0.9 -3.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0504 -0.9 -3.0 Outer membrane protein OprG compare
PP_5230 -0.9 -1.8 Tyrosine recombinase XerC compare
PP_2388 -0.9 -2.1 Transporter, LysE family compare
PP_0961 -0.9 -3.2 toluene tolerance protein compare
PP_4532 -0.9 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0513 -0.9 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0593 -0.9 -0.8 putative ribosome-binding factor compare
PP_4797 -0.9 -1.5 conserved protein of unknown function compare
PP_1678 -0.9 -2.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0512 -0.9 -1.4 hypothetical protein compare
PP_2375 -0.9 -4.9 cobalamin-dependent methionine synthase compare
PP_4938 -0.9 -4.4 putative Glycosyl transferase compare
PP_5619 -0.9 -1.9 protein of unknown function compare
PP_4268 -0.9 -0.8 nucleoid-associated broad specificity regulator compare
PP_1304 -0.9 -4.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3505 -0.9 -1.2 conserved protein of unknown function compare
PP_1017 -0.9 -3.5 mannose/glucose ABC transporter, permease protein compare
PP_4364 -0.9 -2.1 putative Anti-sigma F factor antagonist compare
PP_3312 -0.9 -0.8 putative Heat shock protein compare
PP_3507 -0.9 -4.9 Aerobic cobaltochelatase subunit CobN compare
PP_1217 -0.9 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3876 -0.9 -1.7 conserved protein of unknown function compare
PP_1912 -0.9 -2.7 Phosphate acyltransferase compare
PP_2633 -0.9 -1.2 conserved protein of unknown function compare
PP_1770 -0.8 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1719 -0.8 -4.0 Tail-specific protease prc compare
PP_2032 -0.8 -3.2 putative ATPase compare
PP_5168 -0.8 -2.1 sulfate/thiosulfate import ATP-binding protein compare
PP_2878 -0.8 -1.8 conserved protein of unknown function compare
PP_5320 -0.8 -2.5 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_4997 -0.8 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3247 -0.8 -2.1 Transporter, bile acid/Na+ symporter family compare
PP_3880 -0.8 -1.1 conserved exported protein of unknown function compare
PP_4941 -0.8 -3.1 conserved exported protein of unknown function compare
PP_1569 -0.8 -2.3 conserved protein of unknown function compare
PP_1048 -0.8 -1.7 putative protein secretion protein for export compare
PP_2274 -0.8 -1.5 conserved protein of unknown function compare
PP_3378 -0.8 -1.5 putative 2-ketogluconokinase compare
PP_0153 -0.8 -1.5 hypothetical protein compare
PP_0138 -0.8 -5.0 conserved membrane protein of unknown function compare
PP_0775 -0.8 -1.6 conserved protein of unknown function compare
PP_1012 -0.8 -2.5 DNA-binding response regulator compare
PP_5735 -0.8 -1.7 conserved hypothetical protein compare
PP_1555 -0.8 -2.6 putative Phage integrase compare
PP_1731 -0.8 -1.9 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2821 -0.8 -3.5 conserved exported protein of unknown function compare
PP_1679 -0.8 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5483 -0.8 -1.3 conserved protein of unknown function compare
PP_0789 -0.8 -1.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2835 -0.7 -2.0 putative oxidoreductase compare
PP_5110 -0.7 -1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3295 -0.7 -1.5 YeeE/YedE family protein compare
PP_0303 -0.7 -2.1 dehydrocarnitine cleavage enzyme compare
PP_5644 -0.7 -1.9 conserved membrane protein of unknown function compare
PP_4159 -0.7 -1.6 Potassium-transporting ATPase C chain compare
PP_3333 -0.7 -2.0 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms