Experiment set19IT013 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_23545 -5.1 -4.1 gamma-glutamyl kinase compare
PS417_27795 -4.5 -1.3 orotate phosphoribosyltransferase compare
PS417_06375 -4.2 -1.2 deoxycytidine triphosphate deaminase compare
PS417_21480 -4.2 -2.0 23S rRNA pseudouridylate synthase compare
PS417_01915 -4.2 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04380 -3.9 -2.0 ABC transporter permease compare
PS417_03560 -3.7 -2.4 GTP-binding protein compare
PS417_02280 -3.4 -2.5 GlcNAc-PI de-N-acetylase compare
PS417_24745 -3.3 -4.0 gamma-glutamyl phosphate reductase compare
PS417_22565 -3.2 -1.3 formyltetrahydrofolate deformylase compare
PS417_06680 -3.1 -9.8 nuclease PIN compare
PS417_23770 -2.9 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_08125 -2.9 -0.8 prephenate dehydratase compare
PS417_20785 -2.9 -3.9 transcriptional regulator compare
PS417_21575 -2.8 -8.1 chemotaxis protein compare
PS417_04650 -2.8 -1.1 D-alanine--D-alanine ligase compare
PS417_26730 -2.7 -1.1 pyrroline-5-carboxylate reductase compare
PS417_02975 -2.7 -3.5 3-dehydroquinate dehydratase compare
PS417_22450 -2.7 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_27865 -2.7 -3.3 LysR family transcriptional regulator compare
PS417_19650 -2.6 -4.7 chemotaxis protein CheW compare
PS417_19690 -2.5 -7.9 histidine kinase compare
PS417_02575 -2.4 -3.9 membrane protein compare
PS417_03260 -2.4 -1.7 5S ribosomal RNA compare
PS417_08135 -2.3 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08090 -2.2 -1.3 3-oxoacyl-ACP reductase compare
PS417_12855 -2.2 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24585 -2.1 -8.7 AMP nucleosidase compare
PS417_27800 -2.1 -3.5 exodeoxyribonuclease III compare
PS417_08155 -2.1 -2.1 integration host factor subunit beta compare
PS417_27870 -2.1 -4.0 ATP-dependent DNA helicase RecG compare
PS417_00185 -2.1 -4.7 tryptophan synthase subunit beta compare
PS417_26605 -2.1 -1.5 malonate decarboxylase subunit beta compare
PS417_19675 -2.1 -5.2 chemotaxis protein CheY compare
PS417_13510 -2.1 -1.3 polyketide cyclase compare
PS417_23810 -2.0 -10.0 acetolactate synthase 3 catalytic subunit compare
PS417_00180 -2.0 -3.4 tryptophan synthase subunit alpha compare
PS417_04375 -1.9 -3.0 ABC transporter ATP-binding protein compare
PS417_16490 -1.9 -1.9 cell division protein FtsK compare
PS417_19885 -1.9 -4.0 flagellar basal body rod protein FlgG compare
PS417_05535 -1.9 -2.3 Fis family transcriptional regulator compare
PS417_18310 -1.9 -2.2 hypothetical protein compare
PS417_19955 -1.9 -2.2 hypothetical protein compare
PS417_19850 -1.8 -7.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19840 -1.8 -9.2 flagellar cap protein FliD compare
PS417_21595 -1.7 -4.4 flagellar biosynthesis protein FlgN compare
PS417_24500 -1.7 -2.6 DEAD/DEAH box helicase compare
PS417_02555 -1.7 -8.6 exoribonuclease R compare
PS417_21630 -1.7 -2.5 magnesium transporter compare
PS417_20700 -1.7 -8.4 cbb3-type cytochrome c oxidase subunit I compare
PS417_22520 -1.7 -1.7 histidine kinase compare
PS417_19860 -1.7 -10.6 flagellar hook protein FlgL compare
PS417_19880 -1.6 -5.8 flagellar basal body L-ring protein compare
PS417_05635 -1.6 -4.4 membrane protein compare
PS417_21570 -1.6 -3.7 flagellar basal body rod protein FlgB compare
PS417_02000 -1.6 -7.8 glutamate synthase compare
PS417_04385 -1.6 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_19835 -1.6 -2.0 flagellar biosynthesis protein FliS compare
PS417_23805 -1.5 -4.0 acetolactate synthase 3 regulatory subunit compare
PS417_24155 -1.5 -1.8 ATP-binding protein compare
PS417_20775 -1.5 -4.8 coproporphyrinogen III oxidase compare
PS417_19755 -1.5 -2.3 flagellar motor switch protein FliM compare
PS417_07640 -1.5 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_08540 -1.5 -2.5 RNA helicase compare
PS417_26370 -1.5 -3.5 RNA helicase compare
PS417_21430 -1.5 -1.1 3-oxoacyl-ACP synthase compare
PS417_27245 -1.5 -2.9 aminotransferase DegT compare
PS417_27425 -1.4 -5.8 exopolyphosphatase compare
PS417_15105 -1.4 -4.4 membrane protein compare
PS417_19350 -1.4 -2.9 GTP cyclohydrolase compare
PS417_20715 -1.4 -2.3 cytochrome Cbb3 compare
PS417_16750 -1.4 -2.3 ABC transporter ATP-binding protein compare
PS417_15085 -1.4 -4.1 ATPase AAA compare
PS417_02485 -1.4 -3.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02270 -1.4 -3.8 carbamoyltransferase compare
PS417_23995 -1.4 -0.8 preprotein translocase subunit SecG compare
PS417_15100 -1.3 -2.2 BatB protein compare
PS417_25390 -1.3 -2.7 MFS transporter compare
PS417_27585 -1.3 -1.9 diaminopimelate epimerase compare
PS417_22375 -1.3 -0.9 cold-shock protein compare
PS417_19865 -1.3 -6.9 flagellar hook protein FlgK compare
PS417_19765 -1.3 -9.2 flagellar hook-length control protein compare
PS417_01850 -1.3 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19695 -1.3 -8.0 flagellar biosynthesis sigma factor compare
PS417_27875 -1.3 -6.4 histidine kinase compare
PS417_25315 -1.3 -3.4 membrane protein compare
PS417_19740 -1.3 -5.4 flagellar biosynthesis protein flip compare
PS417_14980 -1.3 -1.1 universal stress protein UspA compare
PS417_17215 -1.3 -1.8 peptidylprolyl isomerase compare
PS417_19660 -1.3 -3.9 cobalamin biosynthesis protein CobQ compare
PS417_02415 -1.3 -2.8 phosphoserine phosphatase compare
PS417_19785 -1.2 -3.6 flagellar biogenesis protein compare
PS417_19725 -1.2 -5.8 flagellar biosynthesis protein FlhB compare
PS417_23025 -1.2 -3.9 murein transglycosylase compare
PS417_03300 -1.2 -2.6 alanine acetyltransferase compare
PS417_18250 -1.2 -1.8 chemotaxis protein compare
PS417_05815 -1.2 -3.4 recombinase RecA compare
PS417_21555 -1.2 -7.6 flagellar hook protein FlgE compare
PS417_26990 -1.2 -0.8 RNA pyrophosphohydrolase compare
PS417_21510 -1.2 -1.6 histidine kinase compare
PS417_06205 -1.2 -5.4 methionine aminopeptidase compare
PS417_27075 -1.2 -2.6 thiol-disulfide isomerase compare
PS417_19730 -1.2 -2.4 flagellar biosynthesis protein FliR compare
PS417_25780 -1.2 -2.4 molecular chaperone DnaJ compare
PS417_13800 -1.2 -3.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_22210 -1.2 -2.1 AraC family transcriptional regulator compare
PS417_07565 -1.2 -2.4 hypothetical protein compare
PS417_04835 -1.2 -1.9 hemolysin D compare
PS417_21585 -1.2 -6.7 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_17930 -1.1 -2.8 aldehyde dehydrogenase compare
PS417_06200 -1.1 -4.0 protein-PII uridylyltransferase compare
PS417_19655 -1.1 -2.1 chemotaxis protein CheW compare
PS417_14165 -1.1 -2.5 ArsR family transcriptional regulator compare
PS417_26470 -1.1 -1.6 cytochrome C compare
PS417_23820 -1.1 -4.0 hypothetical protein compare
PS417_23380 -1.1 -1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_12805 -1.1 -7.3 glycogen branching protein compare
PS417_19665 -1.1 -3.3 flagellar motor protein MotD compare
PS417_21560 -1.1 -3.9 flagellar basal body rod modification protein FlgD compare
PS417_14295 -1.1 -2.4 AraC family transcriptional regulator compare
PS417_13075 -1.1 -1.2 hypothetical protein compare
PS417_19805 -1.1 -2.5 flagellar M-ring protein FliF compare
PS417_08130 -1.1 -1.9 aspartate aminotransferase compare
PS417_01145 -1.1 -0.8 taurine transporter ATP-binding subunit compare
PS417_28070 -1.1 -4.4 phosphate ABC transporter ATP-binding protein compare
PS417_21210 -1.1 -2.6 amidotransferase compare
PS417_19735 -1.1 -2.5 flagellar biosynthesis protein FliQ compare
PS417_25270 -1.1 -2.4 NrdR family transcriptional regulator compare
PS417_19705 -1.1 -2.1 flagellar biosynthesis regulator FlhF compare
PS417_08220 -1.0 -0.7 epimerase compare
PS417_15495 -1.0 -2.1 FAD-dependent oxidoreductase compare
PS417_05100 -1.0 -1.5 RNA polymerase sigma factor compare
PS417_07560 -1.0 -1.4 universal stress protein UspA compare
PS417_16520 -1.0 -1.6 cold-shock protein compare
PS417_03340 -1.0 -2.2 gluconate transporter compare
PS417_10425 -1.0 -1.6 hypothetical protein compare
PS417_04390 -1.0 -2.6 toluene tolerance protein compare
PS417_19790 -1.0 -3.1 ATP synthase compare
PS417_00355 -1.0 -2.4 metal ABC transporter permease compare
PS417_18600 -1.0 -2.5 isopropylmalate isomerase compare
PS417_19795 -1.0 -4.8 flagellar assembly protein FliH compare
PS417_16855 -1.0 -1.3 cation:proton antiporter compare
PS417_21565 -1.0 -4.6 flagellar basal body rod protein FlgC compare
PS417_10010 -1.0 -2.4 Replication protein P compare
PS417_02075 -1.0 -2.6 thioesterase compare
PS417_19825 -1.0 -7.1 ATPase AAA compare
PS417_04420 -1.0 -4.6 histidinol dehydrogenase compare
PS417_23950 -1.0 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_21655 -1.0 -0.8 aspartate kinase compare
PS417_12310 -1.0 -4.2 methionine synthase compare
PS417_18585 -1.0 -2.7 3-isopropylmalate dehydrogenase compare
PS417_20985 -1.0 -1.5 porin compare
PS417_19870 -1.0 -1.8 flagellar rod assembly protein FlgJ compare
PS417_02005 -1.0 -4.3 glutamate synthase compare
PS417_12375 -0.9 -2.0 serine/threonine protein phosphatase compare
PS417_06600 -0.9 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_19800 -0.9 -2.2 flagellar motor switch protein FliG compare
PS417_19710 -0.9 -5.4 flagellar biosynthesis protein FlhA compare
PS417_07710 -0.9 -3.0 membrane protein compare
PS417_24620 -0.9 -1.1 hypothetical protein compare
PS417_01635 -0.9 -2.9 nitrogen regulation protein NR(I) compare
PS417_15030 -0.9 -1.0 short-chain dehydrogenase compare
PS417_25840 -0.9 -6.2 SpoVR family protein compare
PS417_00385 -0.9 -0.8 Fur family transcriptional regulator compare
PS417_24615 -0.9 -1.0 hypothetical protein compare
PS417_22815 -0.9 -4.2 permease compare
PS417_03455 -0.9 -1.0 type III secretion protein compare
PS417_27520 -0.9 -2.4 uroporphyrin-III methyltransferase compare
PS417_25650 -0.9 -2.3 anhydro-N-acetylmuramic acid kinase compare
PS417_10130 -0.9 -2.4 hypothetical protein compare
PS417_15820 -0.9 -1.4 universal stress protein UspA compare
PS417_20705 -0.9 -2.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_07615 -0.9 -2.8 TetR family transcriptional regulator compare
PS417_17175 -0.9 -2.6 AraC family transcriptional regulator compare
PS417_16555 -0.9 -0.8 cupin compare
PS417_15225 -0.9 -2.0 alpha/beta hydrolase compare
PS417_08365 -0.9 -0.8 hypothetical protein compare
PS417_16005 -0.9 -2.0 ATPase compare
PS417_15090 -0.9 -1.7 hypothetical protein compare
PS417_13145 -0.9 -1.5 50S ribosomal protein L21 compare
PS417_04595 -0.9 -1.6 cell division protein MraZ compare
PS417_01855 -0.9 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_09915 -0.9 -0.9 hypothetical protein compare
PS417_06780 -0.9 -1.9 TetR family transcriptional regulator compare
PS417_28080 -0.9 -6.2 phosphate ABC transporter permease compare
PS417_20755 -0.8 -3.0 membrane protein compare
PS417_08105 -0.8 -5.9 N-ethylammeline chlorohydrolase compare
PS417_09695 -0.8 -1.2 hydrolase compare
PS417_18595 -0.8 -3.0 3-isopropylmalate dehydratase compare
PS417_23375 -0.8 -1.3 cytochrome C oxidase compare
PS417_08245 -0.8 -0.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18545 -0.8 -1.5 cell division protein compare
PS417_18530 -0.8 -2.8 O-succinylhomoserine sulfhydrylase compare
PS417_27595 -0.8 -1.7 recombinase XerC compare
PS417_04290 -0.8 -2.9 hypothetical protein compare
PS417_24905 -0.8 -3.2 DNA-binding protein compare
PS417_22115 -0.8 -1.8 transcriptional regulator compare
PS417_06245 -0.8 -0.6 zinc metallopeptidase RseP compare
PS417_23390 -0.8 -3.1 ubiquinol oxidase subunit II compare
PS417_19745 -0.8 -3.5 flagellar assembly protein FliO compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments