Experiment set19IT013 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_30

200 most important genes:

  gene name fitness t score description  
PP_1986 -4.6 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0082 -3.9 -6.5 tryptophan synthase alpha chain compare
PP_5015 -3.6 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5674 -3.6 -3.5 conserved protein of unknown function compare
PP_4696 -3.5 -3.4 Nitrogen regulation protein NR(I) compare
PP_2168 -3.4 -9.6 Transaldolase compare
PP_0673 -3.3 -3.3 conserved protein of unknown function compare
PP_0967 -3.1 -7.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -3.1 -6.1 Ornithine carbamoyltransferase compare
PP_5347 -3.0 -9.0 pyruvate carboxylase subunit A compare
PP_5185 -2.9 -5.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4804 -2.9 -2.0 RlpA-like lipoprotein compare
PP_5289 -2.9 -4.7 Acetylglutamate kinase compare
PP_0246 -2.9 -2.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_0966 -2.8 -8.2 Histidinol dehydrogenase compare
PP_4902 -2.6 -2.5 Oligoribonuclease compare
PP_0957 -2.6 -2.0 D-arabinose 5-phosphate isomerase compare
PP_4680 -2.5 -10.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -2.5 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4678 -2.5 -9.2 Ketol-acid reductoisomerase compare
PP_5346 -2.5 -5.8 pyruvate carboxylase subunit B compare
PP_4890 -2.5 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0292 -2.5 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5128 -2.5 -5.3 Dihydroxy-acid dehydratase compare
PP_5097 -2.4 -10.3 homoserine O-acetyltransferase compare
PP_2371 -2.4 -5.4 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -2.4 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5348 -2.3 -6.3 Transcriptional regulator, LysR family compare
PP_1176 -2.3 -2.2 conserved protein of unknown function compare
PP_t29 -2.3 -2.7 tRNA-Ala compare
PP_0289 -2.3 -5.8 Imidazoleglycerol-phosphate dehydratase compare
PP_1985 -2.3 -3.7 3-isopropylmalate dehydratase large subunit compare
PP_4785 -2.3 -7.0 conserved exported protein of unknown function compare
PP_1022 -2.1 -4.0 glucose 6-phosphate-1-dehydrogenase compare
PP_1898 -2.1 -3.3 MotA/TolQ/ExbB proton channel family protein compare
PP_1231 -2.1 -5.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2001 -2.0 -5.8 O-succinylhomoserine sulfhydrylase compare
PP_1734 -2.0 -3.8 Probable septum site-determining protein MinC compare
PP_4679 -2.0 -3.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3241 -2.0 -1.5 conserved exported protein of unknown function compare
PP_0406 -2.0 -2.9 Nucleotidyltransferase family protein compare
PP_0364 -2.0 -6.7 pimeloyl-[acp] methyl ester esterase compare
PP_0083 -2.0 -4.0 tryptophan synthase beta chain compare
PP_5014 -2.0 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_1528 -1.9 -1.7 conserved protein of unknown function compare
PP_2898 -1.9 -2.6 conserved exported protein of unknown function compare
PP_3417 -1.9 -3.3 D-gluconate transporter compare
PP_3449 -1.9 -1.1 conserved exported protein of unknown function compare
PP_3999 -1.9 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3511 -1.9 -5.0 Branched-chain-amino-acid aminotransferase compare
PP_1025 -1.9 -8.8 2-isopropylmalate synthase compare
PP_0164 -1.8 -4.5 conserved protein of unknown function compare
PP_2327 -1.8 -4.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0313 -1.8 -2.4 putative electron transfer flavoprotein beta subunit compare
PP_2402 -1.8 -2.1 putative Sensor histidine kinase compare
PP_2370 -1.8 -2.5 conserved protein of unknown function compare
PP_5217 -1.8 -6.0 Polyphosphate kinase compare
PP_2862 -1.8 -3.6 Undecaprenyl-diphosphatase compare
PP_5303 -1.7 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0184 -1.7 -4.7 Argininosuccinate lyase compare
PP_2900 -1.7 -3.0 conserved protein of unknown function compare
PP_4517 -1.7 -2.2 conserved protein of unknown function compare
PP_1988 -1.7 -5.1 3-isopropylmalate dehydrogenase compare
PP_0422 -1.7 -3.6 Indole-3-glycerol phosphate synthase compare
PP_5225 -1.7 -1.4 frataxin compare
PP_4994 -1.6 -3.0 conserved protein of unknown function compare
PP_5007 -1.6 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0417 -1.6 -8.3 Anthranilate synthase component 1 compare
PP_1654 -1.6 -1.9 cysteine synthase B compare
PP_2107 -1.6 -1.9 conserved protein of unknown function compare
PP_5508 -1.6 -1.3 conserved protein of unknown function compare
PP_5098 -1.6 -3.8 methionine biosynthesis protein MetW compare
PP_4642 -1.6 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_2793 -1.5 -1.6 Acyl-CoA dehydrogenase family protein compare
PP_2145 -1.5 -2.6 beta-N-acetylglucosaminidase compare
PP_2388 -1.5 -2.0 Transporter, LysE family compare
PP_1304 -1.5 -6.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1041 -1.5 -1.9 twin arginine protein export complex subunit compare
PP_5423 -1.5 -2.1 conserved membrane protein of unknown function compare
PP_2820 -1.5 -3.1 HTH-type transcriptional regulator nfxB compare
PP_2631 -1.5 -1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0363 -1.4 -5.7 8-amino-7-oxononanoate synthase compare
PP_1237 -1.4 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5000 -1.4 -1.5 peptidase component of the ATP-dependent HslVU protease compare
PP_5155 -1.4 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5533 -1.4 -1.4 conserved protein of unknown function compare
PP_3891 -1.4 -2.2 conserved protein of unknown function compare
PP_4480 -1.3 -5.4 arginine N-succinyltransferase, subunit alpha compare
PP_0362 -1.3 -5.2 Biotin synthase compare
PP_4695 -1.3 -6.5 Sensory box histidine kinase compare
PP_4925 -1.3 -2.9 conserved protein of unknown function compare
PP_0421 -1.3 -4.6 Anthranilate phosphoribosyltransferase compare
PP_3810 -1.3 -1.5 conserved protein of unknown function compare
PP_0949 -1.3 -3.4 putative ATP-binding protein UPF0042 compare
PP_3770 -1.3 -2.9 conserved protein of unknown function compare
PP_0960 -1.3 -3.3 phospholipid ABC transporter binding protein compare
PP_5203 -1.3 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
PP_3505 -1.3 -1.1 conserved protein of unknown function compare
PP_0547 -1.2 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4936 -1.2 -4.8 O-antigen polymerase compare
PP_3833 -1.2 -2.9 Response regulator compare
PP_1568 -1.2 -1.1 conserved protein of unknown function compare
PP_5095 -1.2 -0.8 pyrroline-5-carboxylate reductase compare
PP_4477 -1.2 -3.8 N-succinylarginine dihydrolase compare
PP_0405 -1.2 -4.7 conserved protein of unknown function compare
PP_2813 -1.2 -2.7 BNR domain protein compare
PP_3806 -1.2 -2.3 Hydrolase, isochorismatase family compare
PP_2826 -1.2 -1.7 Transcriptional regulator MexT compare
PP_2540 -1.1 -2.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0420 -1.1 -4.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4722 -1.1 -2.6 Transcription elongation factor GreA compare
PP_1566 -1.1 -2.9 Peptidase U35 compare
PP_1088 -1.1 -4.1 Argininosuccinate synthase compare
PP_2999 -1.1 -1.1 Glyoxalase family protein compare
PP_2328 -1.1 -3.5 Phosphoadenosine phosphosulfate reductase compare
PP_0291 -1.1 -2.2 conserved protein of unknown function compare
PP_3284 -1.1 -3.0 enoyl-CoA hydratase-isomerase compare
PP_1675 -1.1 -4.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0846 -1.1 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_1553 -1.1 -1.1 conserved protein of unknown function compare
PP_0365 -1.1 -3.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2878 -1.1 -1.9 conserved protein of unknown function compare
PP_1872 -1.1 -5.3 glutamate-pyruvate aminotransferase compare
PP_4910 -1.1 -1.9 conserved protein of unknown function compare
PP_3058 -1.1 -3.0 conserved protein of unknown function compare
PP_1826 -1.1 -0.9 Hydrolase, isochorismatase family compare
PP_4004 -1.1 -2.3 DNA translocase FtsK compare
PP_4271 -1.1 -0.8 conserved protein of unknown function compare
PP_3164 -1.1 -3.0 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_4503 -1.1 -2.6 DNA-binding response regulator compare
PP_0959 -1.1 -1.1 phospholipid ABC transporter compare
PP_0195 -1.0 -1.6 conserved protein of unknown function compare
PP_1764 -1.0 -1.9 Phosphoglycolate phosphatase 2 compare
PP_0513 -1.0 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0839 -1.0 -2.2 tRNA Cm32/Um32 methyltransferase compare
PP_4699 -1.0 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4700 -1.0 -1.0 pantothenate synthetase compare
PP_0801 -1.0 -0.9 conserved exported protein of unknown function compare
PP_4984 -1.0 -4.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3799 -1.0 -2.4 conserved exported protein of unknown function compare
PP_1513 -1.0 -1.0 Ribosomal RNA small subunit methyltransferase J compare
PP_1892 -1.0 -1.3 conserved protein of unknown function compare
PP_3233 -1.0 -2.1 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_0293 -1.0 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3198 -1.0 -1.5 Ferredoxin, 2Fe-2S compare
PP_1344 -1.0 -0.8 conserved protein of unknown function compare
PP_5202 -1.0 -1.8 putative cell division protein compare
PP_5045 -1.0 -1.7 tRNA sulfurtransferase compare
PP_2403 -1.0 -0.7 Chemotaxis protein CheY compare
PP_1679 -1.0 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4977 -1.0 -4.4 5,10-methylenetetrahydrofolate reductase compare
PP_0630 -1.0 -0.8 DNA gyrase inhibitor YacG compare
PP_5SB -0.9 -1.2 5S ribosomal RNA compare
PP_3946 -0.9 -0.7 HTH-type transcriptional repressor NicR compare
PP_1011 -0.9 -4.4 glucokinase compare
PP_4940 -0.9 -4.2 Putative glycosyltransferase compare
PP_4504 -0.9 -1.2 conserved exported protein of unknown function compare
PP_1994 -0.9 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_4223 -0.9 -1.8 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4532 -0.9 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0290 -0.9 -2.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0153 -0.9 -1.3 hypothetical protein compare
PP_5639 -0.9 -3.8 conserved exported protein of unknown function compare
PP_1211 -0.9 -2.0 conserved protein of unknown function compare
PP_4828 -0.9 -1.1 Precorrin-8X methylmutase compare
PP_4989 -0.9 -1.6 Protein PilJ compare
PP_2750 -0.9 -1.8 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1018 -0.9 -2.6 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5714 -0.9 -1.8 conserved protein of unknown function compare
PP_2378 -0.9 -1.3 Fe/S biogenesis protein NfuA compare
PP_3563 -0.9 -1.6 conserved exported protein of unknown function compare
PP_0434 -0.9 -1.9 Anhydro-N-acetylmuramic acid kinase compare
PP_1589 -0.9 -3.6 uridylyltransferase compare
PP_5317 -0.9 -1.6 Probable chorismate pyruvate-lyase compare
PP_2497 -0.9 -1.5 conserved protein of unknown function compare
PP_5320 -0.9 -3.2 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_1673 -0.9 -2.6 cobyrinate a,c-diamide synthase compare
PP_3338 -0.9 -2.1 putative cytochrome bd-type quinol oxidase compare
PP_1142 -0.9 -0.7 conserved protein of unknown function compare
PP_2375 -0.8 -4.8 cobalamin-dependent methionine synthase compare
PP_2883 -0.8 -0.9 conserved protein of unknown function compare
PP_4848 -0.8 -2.1 Curved DNA-binding protein compare
PP_1198 -0.8 -1.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0305 -0.8 -2.0 HTH-type transcriptional regulator CdhR compare
PP_4515 -0.8 -4.1 Transcriptional regulator, MarR family compare
PP_3594 -0.8 -3.0 L-lysine and D-lysine ABC transporter, permease component 1 (from data) compare
PP_2675 -0.8 -1.9 Cytochrome c-type protein compare
PP_3508 -0.8 -1.3 Protein CobW compare
PP_2044 -0.8 -1.4 conserved inner membrane protein of unknown function compare
PP_3098 -0.8 -0.7 conserved protein of unknown function compare
PP_1664 -0.8 -1.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0065 -0.8 -1.9 NAD-binding component of TrK potassium transporter compare
PP_1441 -0.8 -2.0 tRNA (cmo5U34)-methyltransferase compare
PP_3398 -0.8 -1.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5575 -0.8 -0.9 conserved protein of unknown function compare
PP_3041 -0.8 -1.9 conserved protein of unknown function compare
PP_1814 -0.8 -2.7 conserved protein of unknown function compare
PP_3276 -0.8 -1.9 ring 1,2-phenylacetyl-CoA epoxidase beta subunit compare
PP_1719 -0.8 -3.6 Tail-specific protease prc compare
PP_t64 -0.8 -1.4 tRNA-Gly compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms