Experiment set19IT011 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27865 -4.9 -4.6 LysR family transcriptional regulator compare
PS417_23545 -4.3 -4.5 gamma-glutamyl kinase compare
PS417_01915 -4.1 -1.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20985 -4.1 -2.8 porin compare
PS417_06375 -4.0 -1.4 deoxycytidine triphosphate deaminase compare
PS417_27040 -3.4 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_08135 -3.2 -5.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21480 -2.9 -2.5 23S rRNA pseudouridylate synthase compare
PS417_08125 -2.8 -1.0 prephenate dehydratase compare
PS417_23770 -2.8 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_06680 -2.8 -9.6 nuclease PIN compare
PS417_24745 -2.8 -3.4 gamma-glutamyl phosphate reductase compare
PS417_02415 -2.7 -3.8 phosphoserine phosphatase compare
PS417_22450 -2.4 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_24585 -2.4 -9.4 AMP nucleosidase compare
PS417_27800 -2.4 -3.2 exodeoxyribonuclease III compare
PS417_04365 -2.3 -1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27870 -2.2 -3.6 ATP-dependent DNA helicase RecG compare
PS417_01605 -2.2 -2.0 phosphoglycerate mutase compare
PS417_23810 -2.0 -8.6 acetolactate synthase 3 catalytic subunit compare
PS417_07560 -2.0 -2.2 universal stress protein UspA compare
PS417_27245 -1.9 -5.5 aminotransferase DegT compare
PS417_12855 -1.9 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02000 -1.9 -8.5 glutamate synthase compare
PS417_26695 -1.9 -1.6 uracil phosphoribosyltransferase compare
PS417_03260 -1.9 -1.9 5S ribosomal RNA compare
PS417_04650 -1.9 -1.3 D-alanine--D-alanine ligase compare
PS417_07565 -1.9 -2.6 hypothetical protein compare
PS417_21630 -1.9 -2.7 magnesium transporter compare
PS417_27795 -1.9 -1.1 orotate phosphoribosyltransferase compare
PS417_18585 -1.8 -4.1 3-isopropylmalate dehydrogenase compare
PS417_04380 -1.8 -1.2 ABC transporter permease compare
PS417_25710 -1.8 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_19650 -1.8 -4.6 chemotaxis protein CheW compare
PS417_01580 -1.8 -2.1 imidazole glycerol phosphate synthase compare
PS417_21575 -1.7 -5.8 chemotaxis protein compare
PS417_22565 -1.7 -1.2 formyltetrahydrofolate deformylase compare
PS417_22570 -1.7 -1.2 H-NS histone compare
PS417_26990 -1.7 -1.2 RNA pyrophosphohydrolase compare
PS417_26730 -1.6 -1.1 pyrroline-5-carboxylate reductase compare
PS417_01635 -1.6 -5.7 nitrogen regulation protein NR(I) compare
PS417_18560 -1.6 -5.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_21430 -1.6 -1.8 3-oxoacyl-ACP synthase compare
PS417_01640 -1.6 -5.4 histidine kinase compare
PS417_02005 -1.6 -7.3 glutamate synthase compare
PS417_27425 -1.6 -5.8 exopolyphosphatase compare
PS417_26985 -1.6 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02975 -1.5 -4.6 3-dehydroquinate dehydratase compare
PS417_04375 -1.5 -1.9 ABC transporter ATP-binding protein compare
PS417_16195 -1.5 -1.5 AraC family transcriptional regulator compare
PS417_07620 -1.5 -2.5 beta-hexosaminidase compare
PS417_23805 -1.5 -4.3 acetolactate synthase 3 regulatory subunit compare
PS417_12805 -1.5 -7.0 glycogen branching protein compare
PS417_08730 -1.5 -1.3 cytochrome C compare
PS417_09235 -1.5 -1.3 molecular chaperone compare
PS417_13510 -1.4 -1.2 polyketide cyclase compare
PS417_27875 -1.4 -7.1 histidine kinase compare
PS417_04420 -1.4 -6.2 histidinol dehydrogenase compare
PS417_18600 -1.4 -2.5 isopropylmalate isomerase compare
PS417_02555 -1.4 -8.5 exoribonuclease R compare
PS417_00370 -1.4 -1.3 hypothetical protein compare
PS417_28070 -1.4 -7.3 phosphate ABC transporter ATP-binding protein compare
PS417_24155 -1.4 -1.6 ATP-binding protein compare
PS417_25720 -1.4 -5.0 anthranilate synthase component II compare
PS417_22445 -1.4 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_18530 -1.4 -4.8 O-succinylhomoserine sulfhydrylase compare
PS417_18595 -1.3 -3.7 3-isopropylmalate dehydratase compare
PS417_03515 -1.3 -2.0 type III secretion protein compare
PS417_02510 -1.3 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18070 -1.3 -1.3 general secretion pathway protein GspH compare
PS417_06200 -1.3 -4.6 protein-PII uridylyltransferase compare
PS417_28080 -1.3 -8.8 phosphate ABC transporter permease compare
PS417_16510 -1.3 -2.9 Clp protease ClpX compare
PS417_26890 -1.3 -5.1 dihydroxy-acid dehydratase compare
PS417_23950 -1.3 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_08685 -1.3 -1.8 flagellar hook-length control protein FliK compare
PS417_18310 -1.2 -1.4 hypothetical protein compare
PS417_25725 -1.2 -7.2 anthranilate synthase component I compare
PS417_23025 -1.2 -3.8 murein transglycosylase compare
PS417_05815 -1.2 -3.6 recombinase RecA compare
PS417_22520 -1.2 -1.3 histidine kinase compare
PS417_01855 -1.2 -3.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_19690 -1.2 -5.4 histidine kinase compare
PS417_26645 -1.2 -1.0 chemotaxis protein compare
PS417_23775 -1.2 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_16490 -1.2 -1.6 cell division protein FtsK compare
PS417_09545 -1.2 -1.6 aldehyde-activating protein compare
PS417_07640 -1.2 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_08540 -1.2 -2.4 RNA helicase compare
PS417_08090 -1.2 -1.1 3-oxoacyl-ACP reductase compare
PS417_21655 -1.2 -1.3 aspartate kinase compare
PS417_16005 -1.2 -3.7 ATPase compare
PS417_01565 -1.2 -4.6 imidazole glycerol phosphate synthase compare
PS417_09460 -1.2 -2.4 alkanesulfonate monooxygenase compare
PS417_17830 -1.1 -2.8 4-hydroxyphenylacetate isomerase compare
PS417_00185 -1.1 -1.9 tryptophan synthase subunit beta compare
PS417_23995 -1.1 -0.8 preprotein translocase subunit SecG compare
PS417_15885 -1.1 -2.0 GCN5 family acetyltransferase compare
PS417_01645 -1.1 -2.4 cupin compare
PS417_12795 -1.1 -5.9 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_03165 -1.1 -2.5 hypothetical protein compare
PS417_04415 -1.1 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_22690 -1.1 -2.3 phosphogluconate dehydratase compare
PS417_19860 -1.0 -8.6 flagellar hook protein FlgL compare
PS417_12310 -1.0 -5.8 methionine synthase compare
PS417_09470 -1.0 -1.1 hypothetical protein compare
PS417_01575 -1.0 -1.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_10985 -1.0 -1.1 NADH:flavin oxidoreductase compare
PS417_24705 -1.0 -3.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_15105 -1.0 -4.9 membrane protein compare
PS417_20785 -1.0 -2.4 transcriptional regulator compare
PS417_25715 -1.0 -3.4 anthranilate phosphoribosyltransferase compare
PS417_08155 -1.0 -1.5 integration host factor subunit beta compare
PS417_01875 -1.0 -2.0 polyhydroxyalkanoic acid system protein compare
PS417_01560 -1.0 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_06205 -0.9 -4.9 methionine aminopeptidase compare
PS417_19350 -0.9 -1.8 GTP cyclohydrolase compare
PS417_22895 -0.9 -4.4 tyrosine recombinase XerD compare
PS417_28220 -0.9 -2.2 LysR family transcriptional regulator compare
PS417_26805 -0.9 -0.9 cell division protein FtsE compare
PS417_01850 -0.9 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27315 -0.9 -1.1 hypothetical protein compare
PS417_19955 -0.9 -1.5 hypothetical protein compare
PS417_15110 -0.9 -2.7 protein BatD compare
PS417_07170 -0.9 -2.3 hypothetical protein compare
PS417_19835 -0.9 -1.6 flagellar biosynthesis protein FliS compare
PS417_23800 -0.9 -5.5 ketol-acid reductoisomerase compare
PS417_28085 -0.9 -6.4 phosphate-binding protein compare
PS417_19975 -0.9 -1.7 hypothetical protein compare
PS417_09325 -0.9 -3.0 peptidase S41 compare
PS417_06540 -0.9 -1.3 membrane protein compare
PS417_14245 -0.9 -2.0 hypothetical protein compare
PS417_02270 -0.9 -2.8 carbamoyltransferase compare
PS417_02280 -0.9 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_02560 -0.9 -1.1 23S rRNA methyltransferase compare
PS417_04385 -0.9 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_20610 -0.9 -1.1 hypothetical protein compare
PS417_25830 -0.9 -5.0 serine/threonine protein kinase compare
PS417_05065 -0.9 -1.5 hypothetical protein compare
PS417_19850 -0.9 -5.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_14805 -0.9 -1.1 AraC family transcriptional regulator compare
PS417_25380 -0.8 -2.6 hypothetical protein compare
PS417_09975 -0.8 -2.7 hypothetical protein compare
PS417_05580 -0.8 -4.6 glycerol uptake facilitator GlpF compare
PS417_07120 -0.8 -3.1 RNA polymerase sigma-H factor compare
PS417_09915 -0.8 -1.4 hypothetical protein compare
PS417_04290 -0.8 -2.2 hypothetical protein compare
PS417_23105 -0.8 -1.3 hypothetical protein compare
PS417_02485 -0.8 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_18360 -0.8 -1.5 hypothetical protein compare
PS417_00405 -0.8 -4.1 DNA polymerase I compare
PS417_02575 -0.8 -2.2 membrane protein compare
PS417_08045 -0.8 -1.5 uracil permease compare
PS417_21125 -0.8 -3.7 phosphoadenosine phosphosulfate reductase compare
PS417_21560 -0.8 -3.3 flagellar basal body rod modification protein FlgD compare
PS417_07165 -0.8 -2.8 dihydrodipicolinate synthase compare
PS417_22210 -0.8 -1.0 AraC family transcriptional regulator compare
PS417_10920 -0.8 -1.3 LysR family transcriptional regulator compare
PS417_15255 -0.8 -1.6 serine/threonine protein kinase compare
PS417_08295 -0.8 -1.1 ATPase compare
PS417_21595 -0.8 -3.3 flagellar biosynthesis protein FlgN compare
PS417_07615 -0.8 -2.7 TetR family transcriptional regulator compare
PS417_12280 -0.8 -1.6 MerR family transcriptional regulator compare
PS417_01620 -0.8 -1.1 preprotein translocase subunit SecB compare
PS417_15095 -0.8 -1.5 hypothetical protein compare
PS417_23095 -0.8 -0.7 exodeoxyribonuclease compare
PS417_16850 -0.8 -1.4 cation:proton antiporter compare
PS417_15285 -0.8 -0.8 type VI secretion protein compare
PS417_05025 -0.8 -1.6 maleylacetoacetate isomerase compare
PS417_22175 -0.8 -1.1 amino acid transporter LysE compare
PS417_20705 -0.8 -1.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_17215 -0.8 -1.5 peptidylprolyl isomerase compare
PS417_16465 -0.8 -4.6 sirohydrochlorin ferrochelatase compare
PS417_04595 -0.8 -1.6 cell division protein MraZ compare
PS417_05595 -0.7 -4.7 ornithine carbamoyltransferase compare
PS417_02880 -0.7 -1.1 copper chaperone compare
PS417_28020 -0.7 -1.4 chorismate--pyruvate lyase compare
PS417_14045 -0.7 -2.5 alkyl hydroperoxide reductase compare
PS417_00570 -0.7 -3.1 NADP transhydrogenase subunit alpha compare
PS417_19065 -0.7 -0.8 monooxygenase compare
PS417_23375 -0.7 -1.5 cytochrome C oxidase compare
PS417_18040 -0.7 -1.1 general secretion pathway protein GspN compare
PS417_07455 -0.7 -1.5 glutamine amidotransferase compare
PS417_02225 -0.7 -1.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_02950 -0.7 -1.1 tRNA-dihydrouridine synthase B compare
PS417_14280 -0.7 -1.7 hypothetical protein compare
PS417_26685 -0.7 -1.2 hypothetical protein compare
PS417_12290 -0.7 -4.3 sulfite reductase compare
PS417_23380 -0.7 -1.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_19865 -0.7 -5.3 flagellar hook protein FlgK compare
PS417_25835 -0.7 -4.8 hypothetical protein compare
PS417_27300 -0.7 -0.6 cell division protein ZapA compare
PS417_19870 -0.7 -2.9 flagellar rod assembly protein FlgJ compare
PS417_01340 -0.7 -2.9 agmatine deiminase compare
PS417_02475 -0.7 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_19665 -0.7 -1.8 flagellar motor protein MotD compare
PS417_26995 -0.7 -2.9 phosphoserine phosphatase compare
PS417_06820 -0.7 -2.3 amidase compare
PS417_14850 -0.7 -1.7 hypothetical protein compare
PS417_22025 -0.7 -1.5 LysR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments