Experiment set19IT010 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_01575 -9.4 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19730 -9.4 -3.0 flagellar biosynthesis protein FliR compare
PS417_21565 -9.4 -3.8 flagellar basal body rod protein FlgC compare
PS417_27835 -9.2 -4.3 endoribonuclease compare
PS417_19880 -8.8 -7.2 flagellar basal body L-ring protein compare
PS417_19695 -8.5 -9.6 flagellar biosynthesis sigma factor compare
PS417_18540 -8.3 -3.3 colicin V production CvpA compare
PS417_18600 -8.3 -2.6 isopropylmalate isomerase compare
PS417_21575 -8.1 -4.3 chemotaxis protein compare
PS417_18560 -7.9 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26740 -7.8 -6.5 homoserine acetyltransferase compare
PS417_21555 -7.7 -12.5 flagellar hook protein FlgE compare
PS417_19660 -7.6 -5.4 cobalamin biosynthesis protein CobQ compare
PS417_19740 -7.6 -6.6 flagellar biosynthesis protein flip compare
PS417_19710 -7.6 -17.7 flagellar biosynthesis protein FlhA compare
PS417_02510 -7.4 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04415 -7.4 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_19860 -7.4 -17.9 flagellar hook protein FlgL compare
PS417_21585 -7.4 -8.6 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19755 -7.3 -1.3 flagellar motor switch protein FliM compare
PS417_19725 -7.3 -3.9 flagellar biosynthesis protein FlhB compare
PS417_19690 -7.1 -3.6 histidine kinase compare
PS417_19795 -7.1 -7.9 flagellar assembly protein FliH compare
PS417_19805 -7.1 -1.7 flagellar M-ring protein FliF compare
PS417_19665 -7.1 -3.1 flagellar motor protein MotD compare
PS417_18585 -7.0 -4.0 3-isopropylmalate dehydrogenase compare
PS417_21595 -7.0 -4.1 flagellar biosynthesis protein FlgN compare
PS417_23800 -7.0 -6.8 ketol-acid reductoisomerase compare
PS417_25715 -6.9 -3.7 anthranilate phosphoribosyltransferase compare
PS417_19650 -6.9 -3.2 chemotaxis protein CheW compare
PS417_05635 -6.9 -5.2 membrane protein compare
PS417_19825 -6.8 -12.1 ATPase AAA compare
PS417_05595 -6.8 -10.4 ornithine carbamoyltransferase compare
PS417_19705 -6.8 -2.4 flagellar biosynthesis regulator FlhF compare
PS417_04420 -6.8 -9.6 histidinol dehydrogenase compare
PS417_01565 -6.7 -3.6 imidazole glycerol phosphate synthase compare
PS417_23950 -6.7 -2.1 polynucleotide phosphorylase/polyadenylase compare
PS417_21570 -6.7 -3.9 flagellar basal body rod protein FlgB compare
PS417_26995 -6.6 -7.9 phosphoserine phosphatase compare
PS417_19765 -6.5 -7.8 flagellar hook-length control protein compare
PS417_23810 -6.5 -10.8 acetolactate synthase 3 catalytic subunit compare
PS417_02005 -6.5 -11.8 glutamate synthase compare
PS417_01955 -6.4 -7.7 peptidase compare
PS417_27040 -6.4 -1.9 3-phosphoglycerate dehydrogenase compare
PS417_00185 -6.3 -3.0 tryptophan synthase subunit beta compare
PS417_25725 -6.2 -10.4 anthranilate synthase component I compare
PS417_19885 -6.2 -1.5 flagellar basal body rod protein FlgG compare
PS417_19675 -6.2 -4.4 chemotaxis protein CheY compare
PS417_25720 -6.2 -6.2 anthranilate synthase component II compare
PS417_19745 -6.1 -6.6 flagellar assembly protein FliO compare
PS417_23805 -6.1 -3.9 acetolactate synthase 3 regulatory subunit compare
PS417_19850 -6.0 -7.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23545 -5.8 -2.1 gamma-glutamyl kinase compare
PS417_20105 -5.7 -19.9 glycosyl transferase compare
PS417_01850 -5.7 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_12855 -5.7 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18595 -5.7 -3.4 3-isopropylmalate dehydratase compare
PS417_19840 -5.6 -8.0 flagellar cap protein FliD compare
PS417_06245 -5.5 -2.0 zinc metallopeptidase RseP compare
PS417_26890 -5.4 -6.7 dihydroxy-acid dehydratase compare
PS417_19785 -5.3 -4.3 flagellar biogenesis protein compare
PS417_19865 -5.3 -6.9 flagellar hook protein FlgK compare
PS417_19630 -5.3 -2.9 LuxR family transcriptional regulator compare
PS417_01560 -5.3 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_19655 -5.1 -3.1 chemotaxis protein CheW compare
PS417_08245 -5.1 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19645 -5.1 -2.2 chemotaxis protein compare
PS417_08155 -5.1 -1.6 integration host factor subunit beta compare
PS417_19870 -5.1 -4.6 flagellar rod assembly protein FlgJ compare
PS417_01855 -5.0 -2.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_02415 -5.0 -4.7 phosphoserine phosphatase compare
PS417_27245 -5.0 -4.1 aminotransferase DegT compare
PS417_08225 -4.9 -3.8 acetolactate synthase compare
PS417_24745 -4.8 -1.9 gamma-glutamyl phosphate reductase compare
PS417_18530 -4.8 -3.9 O-succinylhomoserine sulfhydrylase compare
PS417_19820 -4.8 -4.9 histidine kinase compare
PS417_19835 -4.8 -1.2 flagellar biosynthesis protein FliS compare
PS417_28220 -4.7 -2.1 LysR family transcriptional regulator compare
PS417_05975 -4.7 -0.9 chemotaxis protein CheW compare
PS417_02000 -4.7 -10.5 glutamate synthase compare
PS417_03560 -4.6 -1.7 GTP-binding protein compare
PS417_08220 -4.6 -0.8 epimerase compare
PS417_21125 -4.6 -5.8 phosphoadenosine phosphosulfate reductase compare
PS417_27795 -4.5 -0.8 orotate phosphoribosyltransferase compare
PS417_08170 -4.5 -10.3 capsular biosynthesis protein compare
PS417_25710 -4.5 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_20610 -4.4 -1.1 hypothetical protein compare
PS417_15105 -4.4 -7.8 membrane protein compare
PS417_17215 -4.4 -3.3 peptidylprolyl isomerase compare
PS417_19620 -4.4 -2.0 hypothetical protein compare
PS417_24460 -4.3 -2.2 hypothetical protein compare
PS417_23490 -4.3 -1.1 dihydrofolate reductase compare
PS417_23995 -4.3 -0.8 preprotein translocase subunit SecG compare
PS417_23580 -4.2 -1.1 peptidylprolyl isomerase compare
PS417_19625 -4.2 -3.8 histidine kinase compare
PS417_19790 -4.2 -2.4 ATP synthase compare
PS417_06375 -4.1 -0.7 deoxycytidine triphosphate deaminase compare
PS417_00755 -4.1 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_21630 -4.1 -1.9 magnesium transporter compare
PS417_19800 -4.1 -2.2 flagellar motor switch protein FliG compare
PS417_04500 -4.1 -1.0 hypothetical protein compare
PS417_24835 -4.0 -3.4 hypothetical protein compare
PS417_08230 -4.0 -1.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_20785 -4.0 -2.4 transcriptional regulator compare
PS417_01580 -4.0 -1.0 imidazole glycerol phosphate synthase compare
PS417_04875 -4.0 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_22810 -4.0 -2.1 DNA base-flipping protein YbaZ compare
PS417_16370 -3.9 -8.5 chemotaxis protein CheY compare
PS417_19735 -3.9 -3.6 flagellar biosynthesis protein FliQ compare
PS417_16465 -3.9 -10.9 sirohydrochlorin ferrochelatase compare
PS417_27305 -3.8 -6.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_27195 -3.8 -0.9 N-acetylglutamate synthase compare
PS417_02255 -3.8 -2.2 lipopolysaccharide kinase compare
PS417_21390 -3.7 -3.2 hypothetical protein compare
PS417_12310 -3.7 -8.3 methionine synthase compare
PS417_27315 -3.6 -0.9 hypothetical protein compare
PS417_23025 -3.6 -6.0 murein transglycosylase compare
PS417_02210 -3.6 -3.6 diguanylate cyclase compare
PS417_24710 -3.6 -6.0 lipoprotein compare
PS417_08195 -3.6 -6.1 hypothetical protein compare
PS417_23110 -3.5 -4.9 2-isopropylmalate synthase compare
PS417_22450 -3.5 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_03260 -3.5 -0.9 5S ribosomal RNA compare
PS417_16990 -3.4 -5.9 acyl-CoA dehydrogenase compare
PS417_08200 -3.4 -2.5 hypothetical protein compare
PS417_01605 -3.4 -1.2 phosphoglycerate mutase compare
PS417_19830 -3.4 -2.7 flagellar assembly protein FliT compare
PS417_20775 -3.4 -4.5 coproporphyrinogen III oxidase compare
PS417_10720 -3.3 -6.8 chemotaxis protein CheY compare
PS417_20650 -3.3 -7.9 hypothetical protein compare
PS417_02280 -3.3 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_20025 -3.3 -1.4 alpha-ribazole phosphatase compare
PS417_08135 -3.2 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18570 -3.2 -4.2 peptidoglycan-binding protein compare
PS417_09085 -3.2 -1.1 hypothetical protein compare
PS417_05575 -3.1 -7.4 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_08190 -3.1 -10.3 membrane protein compare
PS417_12355 -3.1 -1.9 magnesium chelatase compare
PS417_23775 -3.0 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_21655 -3.0 -0.7 aspartate kinase compare
PS417_21560 -3.0 -2.8 flagellar basal body rod modification protein FlgD compare
PS417_27800 -3.0 -2.1 exodeoxyribonuclease III compare
PS417_07170 -3.0 -5.0 hypothetical protein compare
PS417_05535 -2.9 -1.8 Fis family transcriptional regulator compare
PS417_22520 -2.9 -1.4 histidine kinase compare
PS417_22445 -2.9 -3.6 ATP-dependent DNA helicase RuvB compare
PS417_12290 -2.9 -6.1 sulfite reductase compare
PS417_15135 -2.9 -1.5 hypothetical protein compare
PS417_25390 -2.9 -3.9 MFS transporter compare
PS417_26510 -2.9 -8.7 5,10-methylenetetrahydrofolate reductase compare
PS417_26770 -2.9 -2.2 tRNA (guanine-N7)-methyltransferase compare
PS417_06600 -2.9 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_21990 -2.8 -1.9 LacI family transcriptional regulator compare
PS417_08205 -2.8 -3.1 acetyltransferase compare
PS417_08125 -2.8 -0.5 prephenate dehydratase compare
PS417_06455 -2.8 -3.3 Fe(II)-dependent oxygenase compare
PS417_04650 -2.8 -0.7 D-alanine--D-alanine ligase compare
PS417_14065 -2.8 -5.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_27005 -2.8 -0.9 membrane protein compare
PS417_26730 -2.7 -0.7 pyrroline-5-carboxylate reductase compare
PS417_06200 -2.7 -5.3 protein-PII uridylyltransferase compare
PS417_23770 -2.7 -1.1 exodeoxyribonuclease V subunit alpha compare
PS417_13075 -2.7 -1.1 hypothetical protein compare
PS417_26990 -2.7 -0.7 RNA pyrophosphohydrolase compare
PS417_26745 -2.7 -2.0 methionine biosynthesis protein MetW compare
PS417_00180 -2.7 -1.9 tryptophan synthase subunit alpha compare
PS417_22620 -2.7 -4.4 pyruvate kinase compare
PS417_27870 -2.7 -2.7 ATP-dependent DNA helicase RecG compare
PS417_06445 -2.6 -1.8 iron-siderophore ABC transporter permease compare
PS417_08185 -2.6 -3.2 glycosyl transferase compare
PS417_20160 -2.6 -1.6 cysteine synthase compare
PS417_27640 -2.6 -0.9 TetR family transcriptional regulator compare
PS417_02485 -2.6 -3.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_19615 -2.5 -6.1 chemotaxis protein CheW compare
PS417_18590 -2.5 -2.1 SAM-dependent methyltransferase compare
PS417_27865 -2.5 -1.8 LysR family transcriptional regulator compare
PS417_20090 -2.5 -5.6 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_07840 -2.5 -3.2 hypothetical protein compare
PS417_22050 -2.5 -4.1 ribonuclease BN compare
PS417_01990 -2.5 -5.7 cell division protein compare
PS417_20585 -2.5 -4.6 chemotaxis protein compare
PS417_06680 -2.5 -6.6 nuclease PIN compare
PS417_27035 -2.4 -4.0 FAD-linked oxidase compare
PS417_16490 -2.4 -1.2 cell division protein FtsK compare
PS417_06370 -2.4 -1.2 cold-shock protein compare
PS417_03165 -2.4 -3.5 hypothetical protein compare
PS417_03930 -2.4 -5.5 thymidine phosphorylase compare
PS417_20095 -2.4 -6.3 hypothetical protein compare
PS417_15085 -2.4 -4.0 ATPase AAA compare
PS417_04375 -2.3 -2.0 ABC transporter ATP-binding protein compare
PS417_04380 -2.3 -1.0 ABC transporter permease compare
PS417_12565 -2.2 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_16555 -2.2 -1.4 cupin compare
PS417_21430 -2.2 -1.7 3-oxoacyl-ACP synthase compare
PS417_05985 -2.2 -1.8 chemotaxis protein CheY compare
PS417_20705 -2.2 -2.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_24135 -2.2 -1.6 hypothetical protein compare
PS417_10480 -2.2 -1.5 glutathione S-transferase compare
PS417_15095 -2.2 -2.5 hypothetical protein compare
PS417_18545 -2.2 -1.9 cell division protein compare


Specific Phenotypes

For 8 genes in this experiment