Experiment set19IT009 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27865 -6.0 -5.0 LysR family transcriptional regulator compare
PS417_22565 -4.7 -1.6 formyltetrahydrofolate deformylase compare
PS417_06375 -4.0 -1.3 deoxycytidine triphosphate deaminase compare
PS417_00180 -3.9 -2.6 tryptophan synthase subunit alpha compare
PS417_24745 -3.4 -4.1 gamma-glutamyl phosphate reductase compare
PS417_21630 -3.1 -3.7 magnesium transporter compare
PS417_02415 -3.1 -6.8 phosphoserine phosphatase compare
PS417_08135 -3.0 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08090 -2.9 -1.2 3-oxoacyl-ACP reductase compare
PS417_08130 -2.8 -3.0 aspartate aminotransferase compare
PS417_20715 -2.8 -3.3 cytochrome Cbb3 compare
PS417_19690 -2.8 -5.7 histidine kinase compare
PS417_22520 -2.8 -2.3 histidine kinase compare
PS417_23950 -2.8 -2.9 polynucleotide phosphorylase/polyadenylase compare
PS417_05535 -2.8 -2.0 Fis family transcriptional regulator compare
PS417_08125 -2.8 -0.9 prephenate dehydratase compare
PS417_23545 -2.7 -2.1 gamma-glutamyl kinase compare
PS417_01855 -2.7 -3.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_06680 -2.6 -7.8 nuclease PIN compare
PS417_26730 -2.6 -1.2 pyrroline-5-carboxylate reductase compare
PS417_23810 -2.5 -10.7 acetolactate synthase 3 catalytic subunit compare
PS417_27795 -2.5 -1.1 orotate phosphoribosyltransferase compare
PS417_01850 -2.4 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21575 -2.3 -7.3 chemotaxis protein compare
PS417_22445 -2.3 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_20785 -2.3 -2.9 transcriptional regulator compare
PS417_23770 -2.3 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_19650 -2.3 -6.0 chemotaxis protein CheW compare
PS417_27195 -2.2 -1.7 N-acetylglutamate synthase compare
PS417_23805 -2.2 -4.8 acetolactate synthase 3 regulatory subunit compare
PS417_01575 -2.1 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_06600 -2.1 -1.3 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_12855 -2.1 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08540 -2.1 -2.8 RNA helicase compare
PS417_20705 -2.0 -4.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_20985 -1.9 -2.2 porin compare
PS417_24935 -1.9 -1.4 hypothetical protein compare
PS417_01560 -1.9 -2.7 imidazoleglycerol-phosphate dehydratase compare
PS417_01565 -1.9 -6.4 imidazole glycerol phosphate synthase compare
PS417_09235 -1.9 -1.3 molecular chaperone compare
PS417_27245 -1.9 -4.7 aminotransferase DegT compare
PS417_24585 -1.9 -8.9 AMP nucleosidase compare
PS417_18600 -1.8 -3.3 isopropylmalate isomerase compare
PS417_27135 -1.8 -1.0 glutamine synthetase compare
PS417_27425 -1.8 -8.2 exopolyphosphatase compare
PS417_06200 -1.8 -5.5 protein-PII uridylyltransferase compare
PS417_02000 -1.8 -9.0 glutamate synthase compare
PS417_22450 -1.7 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_02555 -1.7 -8.3 exoribonuclease R compare
PS417_27870 -1.7 -2.9 ATP-dependent DNA helicase RecG compare
PS417_15085 -1.7 -5.0 ATPase AAA compare
PS417_27800 -1.7 -2.7 exodeoxyribonuclease III compare
PS417_22990 -1.7 -1.3 iron dicitrate transport regulator FecR compare
PS417_18560 -1.6 -6.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02005 -1.6 -7.1 glutamate synthase compare
PS417_18585 -1.6 -4.0 3-isopropylmalate dehydrogenase compare
PS417_01620 -1.6 -2.5 preprotein translocase subunit SecB compare
PS417_22570 -1.6 -1.0 H-NS histone compare
PS417_19350 -1.6 -5.7 GTP cyclohydrolase compare
PS417_02975 -1.6 -4.4 3-dehydroquinate dehydratase compare
PS417_00185 -1.6 -2.7 tryptophan synthase subunit beta compare
PS417_21210 -1.6 -2.2 amidotransferase compare
PS417_01605 -1.6 -1.4 phosphoglycerate mutase compare
PS417_25315 -1.5 -4.0 membrane protein compare
PS417_03260 -1.5 -1.5 5S ribosomal RNA compare
PS417_23995 -1.5 -0.8 preprotein translocase subunit SecG compare
PS417_20700 -1.5 -8.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_08155 -1.5 -1.2 integration host factor subunit beta compare
PS417_09605 -1.5 -2.4 glycosyl transferase compare
PS417_00370 -1.5 -1.2 hypothetical protein compare
PS417_21430 -1.5 -1.6 3-oxoacyl-ACP synthase compare
PS417_06205 -1.5 -6.7 methionine aminopeptidase compare
PS417_19955 -1.5 -2.0 hypothetical protein compare
PS417_04420 -1.5 -7.0 histidinol dehydrogenase compare
PS417_04385 -1.4 -2.3 organic solvent ABC transporter substrate-binding protein compare
PS417_07565 -1.4 -2.4 hypothetical protein compare
PS417_27040 -1.4 -3.1 3-phosphoglycerate dehydrogenase compare
PS417_19885 -1.4 -3.1 flagellar basal body rod protein FlgG compare
PS417_26420 -1.4 -1.4 hypothetical protein compare
PS417_12310 -1.4 -5.7 methionine synthase compare
PS417_18595 -1.4 -3.0 3-isopropylmalate dehydratase compare
PS417_12805 -1.4 -6.7 glycogen branching protein compare
PS417_25720 -1.4 -5.4 anthranilate synthase component II compare
PS417_07615 -1.4 -4.5 TetR family transcriptional regulator compare
PS417_00385 -1.4 -1.1 Fur family transcriptional regulator compare
PS417_16490 -1.4 -1.6 cell division protein FtsK compare
PS417_04650 -1.3 -1.1 D-alanine--D-alanine ligase compare
PS417_20775 -1.3 -4.5 coproporphyrinogen III oxidase compare
PS417_06685 -1.3 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_28020 -1.3 -2.3 chorismate--pyruvate lyase compare
PS417_00755 -1.3 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_27835 -1.3 -5.3 endoribonuclease compare
PS417_25725 -1.3 -8.6 anthranilate synthase component I compare
PS417_27875 -1.3 -3.9 histidine kinase compare
PS417_10985 -1.3 -1.1 NADH:flavin oxidoreductase compare
PS417_04365 -1.3 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_07560 -1.3 -1.6 universal stress protein UspA compare
PS417_10995 -1.3 -2.7 GntR family transcriptional regulator compare
PS417_15105 -1.3 -5.0 membrane protein compare
PS417_12290 -1.3 -6.5 sulfite reductase compare
PS417_16510 -1.3 -3.5 Clp protease ClpX compare
PS417_00160 -1.3 -3.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_16465 -1.3 -6.4 sirohydrochlorin ferrochelatase compare
PS417_18530 -1.3 -5.9 O-succinylhomoserine sulfhydrylase compare
PS417_17160 -1.3 -2.3 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_22060 -1.3 -1.2 hypothetical protein compare
PS417_04415 -1.2 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01580 -1.2 -1.4 imidazole glycerol phosphate synthase compare
PS417_19665 -1.2 -2.1 flagellar motor protein MotD compare
PS417_20635 -1.2 -1.0 ABC transporter ATP-binding protein compare
PS417_19675 -1.2 -4.6 chemotaxis protein CheY compare
PS417_04390 -1.2 -3.9 toluene tolerance protein compare
PS417_07710 -1.2 -4.1 membrane protein compare
PS417_22300 -1.2 -1.3 LTXXQ domain protein compare
PS417_02575 -1.1 -1.5 membrane protein compare
PS417_19705 -1.1 -2.5 flagellar biosynthesis regulator FlhF compare
PS417_08230 -1.1 -1.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08250 -1.1 -2.2 competence protein ComEA compare
PS417_07170 -1.1 -2.4 hypothetical protein compare
PS417_28220 -1.1 -1.5 LysR family transcriptional regulator compare
PS417_20855 -1.1 -0.9 hypothetical protein compare
PS417_07940 -1.1 -2.2 hypothetical protein compare
PS417_02560 -1.0 -1.2 23S rRNA methyltransferase compare
PS417_01635 -1.0 -3.8 nitrogen regulation protein NR(I) compare
PS417_21480 -1.0 -1.1 23S rRNA pseudouridylate synthase compare
PS417_01920 -1.0 -0.9 ATP-dependent protease subunit HslV compare
PS417_19660 -1.0 -3.9 cobalamin biosynthesis protein CobQ compare
PS417_26740 -1.0 -4.7 homoserine acetyltransferase compare
PS417_02270 -1.0 -2.5 carbamoyltransferase compare
PS417_19860 -1.0 -7.2 flagellar hook protein FlgL compare
PS417_24115 -1.0 -1.1 hypothetical protein compare
PS417_27005 -1.0 -0.9 membrane protein compare
PS417_05105 -1.0 -2.9 membrane protein compare
PS417_09245 -1.0 -1.3 recombinase RdgC compare
PS417_08220 -1.0 -0.7 epimerase compare
PS417_04595 -1.0 -1.8 cell division protein MraZ compare
PS417_23025 -1.0 -3.5 murein transglycosylase compare
PS417_18545 -1.0 -1.9 cell division protein compare
PS417_04055 -1.0 -3.3 peptide transporter compare
PS417_28070 -1.0 -5.2 phosphate ABC transporter ATP-binding protein compare
PS417_22895 -1.0 -6.1 tyrosine recombinase XerD compare
PS417_21425 -1.0 -1.1 4-amino-4-deoxychorismate lyase compare
PS417_27585 -1.0 -1.5 diaminopimelate epimerase compare
PS417_21125 -1.0 -4.2 phosphoadenosine phosphosulfate reductase compare
PS417_10675 -1.0 -0.9 TetR family transcriptional regulator compare
PS417_02485 -1.0 -2.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02280 -1.0 -1.2 GlcNAc-PI de-N-acetylase compare
PS417_16990 -1.0 -3.7 acyl-CoA dehydrogenase compare
PS417_08620 -1.0 -0.9 hypothetical protein compare
PS417_05635 -1.0 -3.5 membrane protein compare
PS417_26890 -1.0 -4.4 dihydroxy-acid dehydratase compare
PS417_24710 -0.9 -4.7 lipoprotein compare
PS417_18025 -0.9 -2.6 cytochrome C compare
PS417_23800 -0.9 -4.8 ketol-acid reductoisomerase compare
PS417_26995 -0.9 -3.8 phosphoserine phosphatase compare
PS417_06245 -0.9 -1.3 zinc metallopeptidase RseP compare
PS417_02510 -0.9 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26985 -0.9 -3.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19425 -0.9 -0.8 allantoicase compare
PS417_07875 -0.9 -0.8 hypothetical protein compare
PS417_11810 -0.9 -1.3 oxidoreductase compare
PS417_00510 -0.9 -0.8 membrane protein compare
PS417_21320 -0.9 -2.5 transcriptional regulator compare
PS417_02255 -0.9 -2.0 lipopolysaccharide kinase compare
PS417_12110 -0.9 -1.2 ATP-binding protein compare
PS417_26510 -0.9 -3.9 5,10-methylenetetrahydrofolate reductase compare
PS417_00650 -0.9 -0.6 LysR family transcriptional regulator compare
PS417_27305 -0.9 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_12795 -0.9 -5.5 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_22950 -0.9 -1.4 preQ0 transporter compare
PS417_18420 -0.9 -1.8 deoxyribonuclease compare
PS417_05575 -0.9 -4.2 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_27505 -0.9 -2.2 transcriptional regulator compare
PS417_02720 -0.9 -0.7 TetR family transcriptional regulator compare
PS417_24155 -0.9 -1.3 ATP-binding protein compare
PS417_15770 -0.9 -1.1 pyridoxine 5'-phosphate oxidase compare
PS417_17795 -0.9 -1.0 ABC transporter permease compare
PS417_23380 -0.8 -1.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_27035 -0.8 -1.9 FAD-linked oxidase compare
PS417_09330 -0.8 -1.7 NAD(P)H-quinone oxidoreductase compare
PS417_19835 -0.8 -1.2 flagellar biosynthesis protein FliS compare
PS417_27300 -0.8 -0.6 cell division protein ZapA compare
PS417_04230 -0.8 -1.8 lipoprotein compare
PS417_05595 -0.8 -4.8 ornithine carbamoyltransferase compare
PS417_13205 -0.8 -1.5 isochorismate-pyruvate lyase compare
PS417_15090 -0.8 -1.3 hypothetical protein compare
PS417_18640 -0.8 -1.9 hydrolase compare
PS417_19880 -0.8 -4.9 flagellar basal body L-ring protein compare
PS417_07640 -0.8 -1.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_22690 -0.8 -3.0 phosphogluconate dehydratase compare
PS417_15110 -0.8 -2.6 protein BatD compare
PS417_19840 -0.8 -5.2 flagellar cap protein FliD compare
PS417_25730 -0.8 -3.4 phosphoglycolate phosphatase compare
PS417_27295 -0.8 -2.0 hypothetical protein compare
PS417_13795 -0.8 -2.6 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_23900 -0.8 -3.3 poly(A) polymerase compare
PS417_21570 -0.8 -3.6 flagellar basal body rod protein FlgB compare
PS417_16195 -0.8 -0.8 AraC family transcriptional regulator compare
PS417_03045 -0.8 -1.3 hypothetical protein compare
PS417_24500 -0.8 -1.5 DEAD/DEAH box helicase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments