Experiment set19IT009 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_21

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.4 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -6.4 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1986 -5.8 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_0082 -4.8 -7.4 tryptophan synthase alpha chain compare
PP_2414 -4.7 -4.3 conserved exported protein of unknown function compare
PP_2168 -4.7 -10.6 Transaldolase compare
PP_5185 -4.5 -7.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5097 -4.3 -13.5 homoserine O-acetyltransferase compare
PP_4696 -4.2 -5.7 Nitrogen regulation protein NR(I) compare
PP_0083 -4.1 -8.7 tryptophan synthase beta chain compare
PP_1985 -4.1 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_0965 -4.0 -9.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0184 -3.9 -8.0 Argininosuccinate lyase compare
PP_0290 -3.8 -7.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0967 -3.7 -9.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0289 -3.7 -5.8 Imidazoleglycerol-phosphate dehydratase compare
PP_1079 -3.7 -4.1 Ornithine carbamoyltransferase compare
PP_1988 -3.7 -7.4 3-isopropylmalate dehydrogenase compare
PP_2371 -3.6 -7.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1654 -3.5 -4.1 cysteine synthase B compare
PP_4804 -3.5 -3.4 RlpA-like lipoprotein compare
PP_3999 -3.4 -8.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2370 -3.4 -4.8 conserved protein of unknown function compare
PP_3511 -3.4 -9.6 Branched-chain-amino-acid aminotransferase compare
PP_5347 -3.4 -9.6 pyruvate carboxylase subunit A compare
PP_4890 -3.3 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4678 -3.3 -13.2 Ketol-acid reductoisomerase compare
PP_5348 -3.3 -8.1 Transcriptional regulator, LysR family compare
PP_0966 -3.2 -7.3 Histidinol dehydrogenase compare
PP_5014 -3.1 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1088 -3.1 -11.8 Argininosuccinate synthase compare
PP_0417 -3.1 -13.8 Anthranilate synthase component 1 compare
PP_4902 -3.1 -3.6 Oligoribonuclease compare
PP_4680 -3.0 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -3.0 -6.6 Dihydroxy-acid dehydratase compare
PP_5303 -2.9 -3.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4679 -2.9 -4.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0364 -2.9 -7.9 pimeloyl-[acp] methyl ester esterase compare
PP_0422 -2.8 -5.3 Indole-3-glycerol phosphate synthase compare
PP_4909 -2.8 -6.5 phosphoserine phosphatase compare
PP_0421 -2.8 -7.5 Anthranilate phosphoribosyltransferase compare
PP_5289 -2.8 -5.2 Acetylglutamate kinase compare
PP_2402 -2.7 -3.3 putative Sensor histidine kinase compare
PP_1025 -2.7 -9.2 2-isopropylmalate synthase compare
PP_2328 -2.7 -6.0 Phosphoadenosine phosphosulfate reductase compare
PP_5155 -2.7 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1995 -2.6 -7.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2327 -2.6 -5.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0365 -2.6 -6.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2001 -2.5 -7.0 O-succinylhomoserine sulfhydrylase compare
PP_1362 -2.5 -3.9 pyruvate kinase II compare
PP_5098 -2.4 -4.7 methionine biosynthesis protein MetW compare
PP_5346 -2.4 -6.6 pyruvate carboxylase subunit B compare
PP_5095 -2.4 -1.6 pyrroline-5-carboxylate reductase compare
PP_1233 -2.3 -4.2 sulfurtransferase compare
PP_5350 -2.3 -3.9 Transcriptional regulator, RpiR family compare
PP_0914 -2.3 -7.9 GGDEF domain protein compare
PP_4126 -2.3 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_4984 -2.3 -7.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0291 -2.2 -2.6 conserved protein of unknown function compare
PP_1142 -2.2 -1.5 conserved protein of unknown function compare
PP_0362 -2.2 -8.2 Biotin synthase compare
PP_1528 -2.1 -1.9 conserved protein of unknown function compare
PP_4700 -2.1 -2.0 pantothenate synthetase compare
PP_4961 -2.0 -2.2 putative Lipoprotein compare
PP_1912 -2.0 -5.6 Phosphate acyltransferase compare
PP_1231 -1.9 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5015 -1.9 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3105 -1.9 -2.4 conserved membrane protein of unknown function compare
PP_0363 -1.9 -6.8 8-amino-7-oxononanoate synthase compare
PP_2302 -1.9 -5.0 DNA-binding, ATP-dependent protease compare
PP_0420 -1.8 -5.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5054 -1.8 -2.1 glutaredoxin 3 compare
PP_5028 -1.8 -3.8 proline iminopeptidase compare
PP_4994 -1.8 -4.2 conserved protein of unknown function compare
PP_2433 -1.7 -1.9 conserved protein of unknown function compare
PP_0366 -1.7 -4.7 dethiobiotin synthetase compare
PP_4199 -1.7 -1.5 putative Lipoprotein compare
PP_5217 -1.7 -8.0 Polyphosphate kinase compare
PP_4480 -1.7 -7.6 arginine N-succinyltransferase, subunit alpha compare
PP_0393 -1.6 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4008 -1.6 -5.4 ATP-dependent serine protease compare
PP_2378 -1.6 -2.8 Fe/S biogenesis protein NfuA compare
PP_1898 -1.6 -4.5 MotA/TolQ/ExbB proton channel family protein compare
PP_5202 -1.5 -2.6 putative cell division protein compare
PP_4368 -1.5 -3.7 flagellar motor switch protein compare
PP_t13 -1.5 -3.3 tRNA-Lys compare
PP_1022 -1.5 -2.6 glucose 6-phosphate-1-dehydrogenase compare
PP_4785 -1.5 -6.2 conserved exported protein of unknown function compare
PP_3417 -1.5 -3.8 D-gluconate transporter compare
PP_0775 -1.4 -1.5 conserved protein of unknown function compare
PP_4273 -1.4 -1.9 Transcriptional regulator, MerR family compare
PP_5104 -1.4 -4.4 thiazole synthase compare
PP_5093 -1.4 -1.7 twitching motility protein compare
PP_0787 -1.4 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4122 -1.4 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0725 -1.4 -3.3 conserved hypothetical TPR repeat protein compare
PP_2820 -1.4 -1.6 HTH-type transcriptional regulator nfxB compare
PP_4936 -1.4 -5.2 O-antigen polymerase compare
PP_1733 -1.4 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4058 -1.4 -6.0 1,4-alpha-glucan branching enzyme compare
PP_4701 -1.3 -1.2 glucose-6-phosphate isomerase compare
PP_4693 -1.3 -3.6 RNA polymerase-binding transcription factor DksA compare
PP_2081 -1.3 -4.5 putative phosphoenolpyruvate synthase regulatory protein compare
PP_0195 -1.3 -2.1 conserved protein of unknown function compare
PP_4964 -1.3 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1217 -1.3 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1575 -1.3 -2.2 conserved protein of unknown function compare
PP_4129 -1.3 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4938 -1.3 -5.8 putative Glycosyl transferase compare
PP_1672 -1.2 -3.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0377 -1.2 -2.1 coenzyme PQQ synthesis protein D compare
PP_1011 -1.2 -4.1 glucokinase compare
PP_4045 -1.2 -1.5 conserved protein of unknown function compare
PP_3840 -1.2 -1.5 conserved protein of unknown function compare
PP_4358 -1.2 -4.3 flagellar synthesis, switching and energizing component compare
PP_0164 -1.2 -2.8 conserved protein of unknown function compare
PP_1679 -1.2 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5227 -1.2 -4.9 diaminopimelate decarboxylase compare
PP_1304 -1.2 -5.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2848 -1.1 -2.7 urease accessory protein compare
PP_0566 -1.1 -1.2 translation-related factor compare
PP_4369 -1.1 -4.7 Flagellar M-ring protein compare
PP_1002 -1.1 -3.5 arginine/ornithine antiporter compare
PP_5552 -1.1 -2.3 conserved protein of unknown function compare
PP_4942 -1.1 -2.3 conserved protein of unknown function compare
PP_1774 -1.1 -1.7 conserved exported protein of unknown function compare
PP_4782 -1.1 -2.5 Phosphomethylpyrimidine kinase compare
PP_3378 -1.1 -2.3 putative 2-ketogluconokinase compare
PP_5295 -1.1 -1.8 conserved protein of unknown function compare
PP_5639 -1.1 -4.8 conserved exported protein of unknown function compare
PP_4739 -1.1 -2.6 conserved protein of unknown function compare
PP_3034 -1.1 -1.9 putative Regulator protein compare
PP_1001 -1.1 -2.2 arginine deiminase compare
PP_1303 -1.0 -3.8 Sulfate adenylyltransferase subunit 2 compare
PP_0022 -1.0 -1.1 hypothetical protein compare
PP_2070 -1.0 -1.9 Transcriptional regulator, AraC family compare
PP_3449 -1.0 -1.4 conserved exported protein of unknown function compare
PP_5090 -1.0 -2.7 putative cell division protein compare
PP_2336 -1.0 -2.7 aconitate hydratase 1 compare
PP_5035 -1.0 -5.3 Histidine utilization repressor compare
PP_t29 -1.0 -1.1 tRNA-Ala compare
PP_4359 -1.0 -3.8 Flagellar protein FliL compare
PP_0839 -1.0 -2.0 tRNA Cm32/Um32 methyltransferase compare
PP_1655 -1.0 -1.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1656 -1.0 -3.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_2345 -1.0 -3.2 conserved exported protein of unknown function compare
PP_3591 -0.9 -2.6 Delta 1-piperideine-2-carboxylate reductase compare
PP_1348 -0.9 -3.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5499 -0.9 -3.1 conserved protein of unknown function compare
PP_3603 -0.9 -3.6 Transcriptional regulator, GntR family compare
PP_4004 -0.9 -1.6 DNA translocase FtsK compare
PP_5313 -0.9 -1.7 DNA-binding protein HU-alpha compare
PP_t12 -0.9 -0.9 tRNA-Thr compare
PP_0547 -0.9 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3020 -0.9 -2.2 putative Serine/threonine protein phosphatase compare
PP_2044 -0.9 -1.9 conserved inner membrane protein of unknown function compare
PP_4370 -0.9 -2.9 Flagellar hook-basal body complex protein FliE compare
PP_0735 -0.9 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_4977 -0.9 -4.6 5,10-methylenetetrahydrofolate reductase compare
PP_0406 -0.9 -1.6 Nucleotidyltransferase family protein compare
PP_5007 -0.9 -1.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0084 -0.9 -4.5 HTH-type transcriptional regulator TrpI compare
PP_2032 -0.9 -2.9 putative ATPase compare
PP_3532 -0.9 -1.6 Transcriptional regulator, AsnC family compare
PP_1677 -0.9 -2.2 Adenosyl-cobyric acid synthase compare
PP_0150 -0.9 -2.6 conserved exported protein of unknown function compare
PP_3035 -0.9 -2.0 conserved protein of unknown function compare
PP_1026 -0.9 -2.8 Peptidase, M23/M37 family compare
PP_0065 -0.9 -1.7 NAD-binding component of TrK potassium transporter compare
PP_5575 -0.9 -1.6 conserved protein of unknown function compare
PP_1826 -0.9 -1.4 Hydrolase, isochorismatase family compare
PP_4258 -0.9 -2.0 cytochrome c oxidase subunit, cbb3-type compare
PP_5000 -0.9 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_2999 -0.8 -1.1 Glyoxalase family protein compare
PP_1128 -0.8 -1.7 OmpA family protein compare
PP_5610 -0.8 -1.6 protein of unknown function compare
PP_1734 -0.8 -2.1 Probable septum site-determining protein MinC compare
PP_4342 -0.8 -1.7 flagellar synthesis regulator, putative ATPase compare
PP_3211 -0.8 -2.1 ABC transporter, ATP-binding protein compare
PP_0232 -0.8 -1.0 ATP-binding taurine transporter subunit compare
PP_2088 -0.8 -1.1 RNA polymerase sigma factor SigX compare
PP_3117 -0.8 -1.2 putative protein involved in error-prone processing of DNA lesions compare
PP_4874 -0.8 -0.8 50S ribosomal protein L9 compare
PP_5183 -0.8 -3.0 glutamylpolyamine synthetase compare
PP_4546 -0.8 -2.2 ATP-dependent helicase HrpA compare
PP_1099 -0.8 -1.0 Cold shock protein CapB compare
PP_1552 -0.8 -1.8 putative Phage replication protein compare
PP_2908 -0.8 -2.8 DNA-binding transcriptional repressor compare
PP_0339 -0.8 -0.5 Pyruvate dehydrogenase E1 component compare
PP_4699 -0.8 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4793 -0.8 -0.9 conserved protein of unknown function compare
PP_1293 -0.8 -0.8 molybdopterin synthase small subunit compare
PP_1683 -0.8 -1.8 Transcriptional regulator, MarR family compare
PP_0979 -0.8 -1.3 DNA polymerase III subunit chi compare
PP_1013 -0.8 -2.8 Sensor histidine kinase compare
PP_1589 -0.8 -4.5 uridylyltransferase compare
PP_5453 -0.8 -1.2 conserved protein of unknown function compare
PP_4124 -0.8 -1.8 NADH-quinone oxidoreductase subunit G compare
PP_1143 -0.8 -3.1 3-hydroxyisobutyrate dehydrogenase family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms