Experiment set19IT008 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_34

200 most important genes:

  gene name fitness t score description  
PP_0082 -5.7 -3.9 tryptophan synthase alpha chain compare
PP_1079 -4.7 -7.9 Ornithine carbamoyltransferase compare
PP_5348 -4.2 -11.2 Transcriptional regulator, LysR family compare
PP_5347 -4.0 -11.3 pyruvate carboxylase subunit A compare
PP_2402 -3.8 -2.6 putative Sensor histidine kinase compare
PP_0293 -3.6 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2168 -3.4 -11.1 Transaldolase compare
PP_2370 -3.3 -4.9 conserved protein of unknown function compare
PP_0292 -3.3 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4696 -3.3 -6.8 Nitrogen regulation protein NR(I) compare
PP_0289 -3.2 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_5346 -3.2 -8.7 pyruvate carboxylase subunit B compare
PP_0967 -3.2 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0787 -3.1 -3.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0083 -3.0 -5.6 tryptophan synthase beta chain compare
PP_5098 -3.0 -7.9 methionine biosynthesis protein MetW compare
PP_0291 -2.9 -3.1 conserved protein of unknown function compare
PP_3999 -2.7 -8.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0966 -2.7 -8.5 Histidinol dehydrogenase compare
PP_1995 -2.7 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1231 -2.6 -4.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5097 -2.5 -10.7 homoserine O-acetyltransferase compare
PP_1022 -2.5 -6.0 glucose 6-phosphate-1-dehydrogenase compare
PP_4804 -2.5 -3.3 RlpA-like lipoprotein compare
PP_2862 -2.4 -7.7 Undecaprenyl-diphosphatase compare
PP_4700 -2.3 -1.6 pantothenate synthetase compare
PP_0290 -2.3 -4.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0184 -2.2 -4.9 Argininosuccinate lyase compare
PP_2328 -2.2 -6.9 Phosphoadenosine phosphosulfate reductase compare
PP_2001 -2.2 -8.1 O-succinylhomoserine sulfhydrylase compare
PP_4890 -2.2 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_1654 -2.1 -3.2 cysteine synthase B compare
PP_4699 -2.1 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1528 -2.1 -2.0 conserved protein of unknown function compare
PP_5028 -2.1 -4.0 proline iminopeptidase compare
PP_2145 -2.1 -3.7 beta-N-acetylglucosaminidase compare
PP_2371 -2.1 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -2.1 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_2378 -2.1 -3.5 Fe/S biogenesis protein NfuA compare
PP_5128 -2.1 -5.3 Dihydroxy-acid dehydratase compare
PP_4785 -2.0 -7.4 conserved exported protein of unknown function compare
PP_0363 -2.0 -8.4 8-amino-7-oxononanoate synthase compare
PP_4902 -2.0 -2.7 Oligoribonuclease compare
PP_0422 -2.0 -4.8 Indole-3-glycerol phosphate synthase compare
PP_0959 -1.9 -2.2 phospholipid ABC transporter compare
PP_4122 -1.9 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0365 -1.9 -6.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3511 -1.9 -6.6 Branched-chain-amino-acid aminotransferase compare
PP_2899 -1.9 -2.3 conserved exported protein of unknown function compare
PP_0362 -1.9 -7.4 Biotin synthase compare
PP_0393 -1.8 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0364 -1.8 -5.8 pimeloyl-[acp] methyl ester esterase compare
PP_1826 -1.8 -1.9 Hydrolase, isochorismatase family compare
PP_0888 -1.8 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_5552 -1.8 -3.2 conserved protein of unknown function compare
PP_4679 -1.8 -4.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -1.8 -2.1 Acetylglutamate kinase compare
PP_1088 -1.7 -7.9 Argininosuccinate synthase compare
PP_1986 -1.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_1988 -1.7 -5.0 3-isopropylmalate dehydrogenase compare
PP_4936 -1.7 -6.1 O-antigen polymerase compare
PP_5185 -1.6 -5.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4984 -1.6 -6.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4680 -1.6 -9.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -1.6 -5.8 Anthranilate phosphoribosyltransferase compare
PP_4909 -1.6 -4.9 phosphoserine phosphatase compare
PP_5303 -1.6 -4.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5155 -1.6 -3.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2327 -1.5 -4.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -1.5 -8.3 2-isopropylmalate synthase compare
PP_4964 -1.5 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_0965 -1.5 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4126 -1.5 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_1217 -1.4 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5217 -1.4 -6.6 Polyphosphate kinase compare
PP_2336 -1.4 -3.4 aconitate hydratase 1 compare
PP_5686 -1.4 -3.0 protein of unknown function compare
PP_1985 -1.4 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_0417 -1.4 -8.6 Anthranilate synthase component 1 compare
PP_0547 -1.4 -6.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4678 -1.4 -7.8 Ketol-acid reductoisomerase compare
PP_4045 -1.4 -3.6 conserved protein of unknown function compare
PP_1733 -1.4 -3.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4695 -1.3 -6.8 Sensory box histidine kinase compare
PP_5230 -1.3 -3.3 Tyrosine recombinase XerC compare
PP_4098 -1.3 -1.5 UvrABC system protein C compare
PP_4124 -1.3 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_1362 -1.3 -3.4 pyruvate kinase II compare
PP_4546 -1.3 -3.3 ATP-dependent helicase HrpA compare
PP_4693 -1.3 -3.5 RNA polymerase-binding transcription factor DksA compare
PP_0366 -1.3 -6.1 dethiobiotin synthetase compare
PP_1898 -1.2 -3.1 MotA/TolQ/ExbB proton channel family protein compare
PP_4004 -1.2 -3.1 DNA translocase FtsK compare
PP_0420 -1.2 -4.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1426 -1.2 -6.3 L-aspartate oxidase compare
PP_0087 -1.2 -3.2 conserved exported protein of unknown function compare
PP_1872 -1.2 -5.9 glutamate-pyruvate aminotransferase compare
PP_2302 -1.2 -3.4 DNA-binding, ATP-dependent protease compare
PP_1702 -1.2 -3.3 Recombination-associated protein RdgC compare
PP_2581 -1.1 -1.9 conserved protein of unknown function compare
PP_4136 -1.1 -1.1 Transcriptional regulator, LuxR family compare
PP_3417 -1.1 -3.1 D-gluconate transporter compare
PP_2510 -1.1 -1.9 conserved protein of unknown function compare
PP_0960 -1.1 -4.0 phospholipid ABC transporter binding protein compare
PP_2253 -1.1 -2.4 Transcriptional regulator, GntR family compare
PP_5015 -1.1 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2999 -1.1 -1.5 Glyoxalase family protein compare
PP_2633 -1.1 -1.8 conserved protein of unknown function compare
PP_5393 -1.1 -1.5 putative metal-binding chaperone compare
PP_3926 -1.1 -1.6 short-chain dehydrogenase compare
PP_1605 -1.1 -2.4 Ribonuclease HII compare
PP_1734 -1.0 -2.9 Probable septum site-determining protein MinC compare
PP_3946 -1.0 -1.6 HTH-type transcriptional repressor NicR compare
PP_0122 -1.0 -2.1 conserved exported protein of unknown function compare
PP_5008 -1.0 -1.5 Poly granule-associated protein compare
PP_1656 -1.0 -3.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_0775 -1.0 -1.9 conserved protein of unknown function compare
PP_1692 -1.0 -1.8 conserved protein of unknown function compare
PP_4938 -1.0 -5.0 putative Glycosyl transferase compare
PP_5507 -1.0 -1.9 protein of unknown function compare
PP_1011 -1.0 -4.6 glucokinase compare
PP_5090 -1.0 -1.4 putative cell division protein compare
PP_1912 -1.0 -2.8 Phosphate acyltransferase compare
PP_1764 -1.0 -1.7 Phosphoglycolate phosphatase 2 compare
PP_5448 -1.0 -1.9 conserved protein of unknown function compare
PP_1013 -1.0 -5.1 Sensor histidine kinase compare
PP_4392 -1.0 -4.3 chemotaxis protein methyltransferase compare
PP_4824 -1.0 -4.4 Sensor histidine kinase/response regulator compare
PP_5639 -1.0 -4.3 conserved exported protein of unknown function compare
PP_5350 -1.0 -2.4 Transcriptional regulator, RpiR family compare
PP_3241 -1.0 -1.3 conserved exported protein of unknown function compare
PP_5000 -0.9 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_2110 -0.9 -3.6 putative ribosomal large subunit pseudouridine synthase compare
PP_1672 -0.9 -3.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3332 -0.9 -3.1 putative cytochrome c-type protein compare
PP_1142 -0.9 -1.0 conserved protein of unknown function compare
PP_4847 -0.9 -2.2 chaperone modulatory of CbpA co-chaperone protein compare
PP_2442 -0.9 -1.9 conserved protein of unknown function, DUF480 family compare
PP_5110 -0.9 -2.0 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4989 -0.9 -2.1 Protein PilJ compare
PP_5203 -0.9 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_0138 -0.9 -5.2 conserved membrane protein of unknown function compare
PP_2345 -0.9 -1.8 conserved exported protein of unknown function compare
PP_4263 -0.9 -1.9 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4897 -0.9 -2.6 N-acetylmuramoyl-L-alanine amidase compare
PP_0719 -0.9 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4994 -0.9 -3.4 conserved protein of unknown function compare
PP_1096 -0.9 -2.2 putative electron transport complex protein compare
PP_2163 -0.9 -3.8 VacJ lipoprotein compare
PP_0434 -0.8 -2.3 Anhydro-N-acetylmuramic acid kinase compare
PP_5035 -0.8 -4.1 Histidine utilization repressor compare
PP_0855 -0.8 -1.5 conserved protein of unknown function compare
PP_0001 -0.8 -0.9 probable chromosome-partitioning protein compare
PP_5453 -0.8 -1.8 conserved protein of unknown function compare
PP_4296 -0.8 -1.3 conserved exported protein of unknown function compare
PP_1994 -0.8 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_0789 -0.8 -1.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1208 -0.8 -1.6 conserved protein of unknown function, SlyX family compare
PP_3963 -0.8 -3.4 conserved protein of unknown function compare
PP_5610 -0.8 -1.7 protein of unknown function compare
PP_0406 -0.8 -1.1 Nucleotidyltransferase family protein compare
PP_3002 -0.8 -1.6 shikimate dehydrogenase-related enzyme compare
PP_3105 -0.8 -1.2 conserved membrane protein of unknown function compare
PP_4940 -0.8 -4.0 Putative glycosyltransferase compare
PP_5058 -0.8 -2.5 Carboxy-terminal-processing protease compare
PP_1778 -0.8 -3.3 Lipopolysaccharide ABC export system, permease protein compare
PP_5571 -0.8 -1.2 conserved protein of unknown function compare
PP_1017 -0.8 -4.2 mannose/glucose ABC transporter, permease protein compare
PP_0621 -0.8 -2.5 conserved protein of unknown function compare
PP_5381 -0.8 -2.4 hypothetical protein compare
PP_4792 -0.8 -1.7 conserved exported protein of unknown function compare
PP_3116 -0.8 -2.2 transcriptional repressor compare
PP_4642 -0.8 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_2375 -0.8 -4.9 cobalamin-dependent methionine synthase compare
PP_1304 -0.8 -3.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4827 -0.8 -4.5 Precorrin-2 C(20)-methyltransferase compare
PP_0254 -0.7 -1.7 conserved protein of unknown function compare
PP_3378 -0.7 -1.1 putative 2-ketogluconokinase compare
PP_4977 -0.7 -4.1 5,10-methylenetetrahydrofolate reductase compare
PP_1655 -0.7 -1.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1016 -0.7 -4.7 mannose/glucose ABC transporter, permease protein compare
PP_4480 -0.7 -3.2 arginine N-succinyltransferase, subunit alpha compare
PP_1725 -0.7 -3.5 conserved protein of unknown function compare
PP_1552 -0.7 -2.2 putative Phage replication protein compare
PP_2032 -0.7 -3.3 putative ATPase compare
PP_2227 -0.7 -3.0 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_5475 -0.7 -0.9 conserved protein of unknown function compare
PP_5227 -0.7 -2.7 diaminopimelate decarboxylase compare
PP_4270 -0.7 -4.0 conserved exported protein of unknown function compare
PP_5320 -0.7 -3.5 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_3098 -0.7 -0.9 conserved protein of unknown function compare
PP_1366 -0.7 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_1550 -0.7 -2.4 Transcriptional regulator, Cro/CI family compare
PP_1018 -0.7 -2.9 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5216 -0.7 -1.0 exopolyphosphatase compare
PP_1310 -0.7 -2.1 conserved hypothetical protein compare
PP_1493 -0.7 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4895 -0.7 -1.4 tRNA dimethylallyltransferase compare
PP_2269 -0.7 -1.6 putative N-acetylmuramoyl-L-alanine amidase compare
PP_0378 -0.7 -3.4 Pyrroloquinoline-quinone synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms