Experiment set19IT007 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27040 -5.6 -3.5 3-phosphoglycerate dehydrogenase compare
PS417_01855 -5.2 -3.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_12855 -4.7 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27795 -4.6 -1.2 orotate phosphoribosyltransferase compare
PS417_06375 -4.2 -1.1 deoxycytidine triphosphate deaminase compare
PS417_27865 -4.2 -3.4 LysR family transcriptional regulator compare
PS417_04420 -4.1 -8.5 histidinol dehydrogenase compare
PS417_18600 -4.1 -3.4 isopropylmalate isomerase compare
PS417_00185 -4.0 -4.2 tryptophan synthase subunit beta compare
PS417_02000 -4.0 -13.9 glutamate synthase compare
PS417_21575 -3.9 -8.7 chemotaxis protein compare
PS417_04415 -3.9 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18595 -3.8 -4.5 3-isopropylmalate dehydratase compare
PS417_19650 -3.8 -7.1 chemotaxis protein CheW compare
PS417_08135 -3.7 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24745 -3.7 -4.8 gamma-glutamyl phosphate reductase compare
PS417_02005 -3.6 -8.3 glutamate synthase compare
PS417_23810 -3.5 -9.1 acetolactate synthase 3 catalytic subunit compare
PS417_25725 -3.5 -13.0 anthranilate synthase component I compare
PS417_19690 -3.5 -6.0 histidine kinase compare
PS417_23805 -3.5 -4.7 acetolactate synthase 3 regulatory subunit compare
PS417_01560 -3.5 -3.5 imidazoleglycerol-phosphate dehydratase compare
PS417_18530 -3.4 -6.8 O-succinylhomoserine sulfhydrylase compare
PS417_02510 -3.3 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_06540 -3.3 -2.3 membrane protein compare
PS417_19860 -3.3 -16.9 flagellar hook protein FlgL compare
PS417_19840 -3.2 -13.1 flagellar cap protein FliD compare
PS417_26740 -3.2 -8.4 homoserine acetyltransferase compare
PS417_19880 -3.2 -9.4 flagellar basal body L-ring protein compare
PS417_18560 -3.2 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18310 -3.2 -2.3 hypothetical protein compare
PS417_01850 -3.1 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21480 -3.1 -1.9 23S rRNA pseudouridylate synthase compare
PS417_25720 -3.1 -6.0 anthranilate synthase component II compare
PS417_01565 -3.1 -4.1 imidazole glycerol phosphate synthase compare
PS417_19865 -3.1 -12.8 flagellar hook protein FlgK compare
PS417_27835 -3.0 -4.7 endoribonuclease compare
PS417_19740 -3.0 -7.4 flagellar biosynthesis protein flip compare
PS417_19725 -3.0 -6.4 flagellar biosynthesis protein FlhB compare
PS417_23800 -3.0 -9.8 ketol-acid reductoisomerase compare
PS417_19790 -3.0 -3.1 ATP synthase compare
PS417_02805 -3.0 -2.3 urease subunit gamma compare
PS417_23770 -3.0 -1.6 exodeoxyribonuclease V subunit alpha compare
PS417_18585 -3.0 -4.1 3-isopropylmalate dehydrogenase compare
PS417_01580 -2.9 -1.8 imidazole glycerol phosphate synthase compare
PS417_21555 -2.8 -11.1 flagellar hook protein FlgE compare
PS417_19675 -2.8 -4.4 chemotaxis protein CheY compare
PS417_19665 -2.8 -4.1 flagellar motor protein MotD compare
PS417_20985 -2.8 -2.7 porin compare
PS417_21630 -2.8 -3.4 magnesium transporter compare
PS417_19885 -2.8 -4.6 flagellar basal body rod protein FlgG compare
PS417_26730 -2.8 -1.0 pyrroline-5-carboxylate reductase compare
PS417_19785 -2.8 -6.1 flagellar biogenesis protein compare
PS417_12290 -2.8 -7.6 sulfite reductase compare
PS417_19850 -2.8 -8.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_26745 -2.8 -6.1 methionine biosynthesis protein MetW compare
PS417_21565 -2.8 -4.7 flagellar basal body rod protein FlgC compare
PS417_01570 -2.7 -3.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_02415 -2.7 -3.4 phosphoserine phosphatase compare
PS417_05635 -2.7 -9.8 membrane protein compare
PS417_19695 -2.7 -11.9 flagellar biosynthesis sigma factor compare
PS417_22450 -2.7 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_25715 -2.7 -6.7 anthranilate phosphoribosyltransferase compare
PS417_21585 -2.7 -12.0 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19795 -2.6 -10.6 flagellar assembly protein FliH compare
PS417_21570 -2.6 -7.1 flagellar basal body rod protein FlgB compare
PS417_19710 -2.6 -13.2 flagellar biosynthesis protein FlhA compare
PS417_19835 -2.6 -1.9 flagellar biosynthesis protein FliS compare
PS417_16465 -2.6 -9.0 sirohydrochlorin ferrochelatase compare
PS417_19655 -2.6 -4.6 chemotaxis protein CheW compare
PS417_06680 -2.6 -8.6 nuclease PIN compare
PS417_19765 -2.5 -12.8 flagellar hook-length control protein compare
PS417_21595 -2.5 -3.5 flagellar biosynthesis protein FlgN compare
PS417_21125 -2.5 -7.9 phosphoadenosine phosphosulfate reductase compare
PS417_01575 -2.5 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19825 -2.5 -13.7 ATPase AAA compare
PS417_23110 -2.5 -7.9 2-isopropylmalate synthase compare
PS417_27245 -2.4 -4.5 aminotransferase DegT compare
PS417_13140 -2.4 -1.7 oxidoreductase compare
PS417_01605 -2.3 -1.6 phosphoglycerate mutase compare
PS417_19870 -2.3 -3.5 flagellar rod assembly protein FlgJ compare
PS417_19730 -2.2 -2.7 flagellar biosynthesis protein FliR compare
PS417_27800 -2.2 -3.4 exodeoxyribonuclease III compare
PS417_13510 -2.2 -1.1 polyketide cyclase compare
PS417_19745 -2.2 -5.5 flagellar assembly protein FliO compare
PS417_08130 -2.2 -2.7 aspartate aminotransferase compare
PS417_26890 -2.1 -4.5 dihydroxy-acid dehydratase compare
PS417_26995 -2.1 -7.6 phosphoserine phosphatase compare
PS417_21390 -2.0 -5.7 hypothetical protein compare
PS417_17645 -2.0 -2.0 RND transporter compare
PS417_19735 -2.0 -4.3 flagellar biosynthesis protein FliQ compare
PS417_23025 -1.9 -5.5 murein transglycosylase compare
PS417_25710 -1.9 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_19800 -1.9 -3.5 flagellar motor switch protein FliG compare
PS417_21430 -1.9 -1.9 3-oxoacyl-ACP synthase compare
PS417_15105 -1.9 -6.6 membrane protein compare
PS417_24500 -1.9 -2.8 DEAD/DEAH box helicase compare
PS417_19705 -1.9 -2.8 flagellar biosynthesis regulator FlhF compare
PS417_26990 -1.9 -1.0 RNA pyrophosphohydrolase compare
PS417_22690 -1.9 -2.9 phosphogluconate dehydratase compare
PS417_23545 -1.8 -2.0 gamma-glutamyl kinase compare
PS417_02555 -1.8 -9.7 exoribonuclease R compare
PS417_01635 -1.8 -7.5 nitrogen regulation protein NR(I) compare
PS417_24620 -1.7 -1.7 hypothetical protein compare
PS417_18690 -1.7 -2.9 aromatic amino acid aminotransferase compare
PS417_01915 -1.7 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_19660 -1.7 -3.8 cobalamin biosynthesis protein CobQ compare
PS417_08540 -1.7 -2.3 RNA helicase compare
PS417_21560 -1.7 -3.3 flagellar basal body rod modification protein FlgD compare
PS417_12310 -1.7 -6.1 methionine synthase compare
PS417_23775 -1.7 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_01920 -1.7 -1.0 ATP-dependent protease subunit HslV compare
PS417_23360 -1.6 -1.0 hypothetical protein compare
PS417_15495 -1.6 -1.3 FAD-dependent oxidoreductase compare
PS417_26985 -1.6 -4.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20160 -1.6 -2.4 cysteine synthase compare
PS417_04375 -1.6 -2.1 ABC transporter ATP-binding protein compare
PS417_21035 -1.6 -7.8 multidrug transporter compare
PS417_07170 -1.6 -2.5 hypothetical protein compare
PS417_15085 -1.6 -3.8 ATPase AAA compare
PS417_22565 -1.6 -0.9 formyltetrahydrofolate deformylase compare
PS417_20705 -1.6 -2.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_08245 -1.6 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18590 -1.6 -3.2 SAM-dependent methyltransferase compare
PS417_10245 -1.6 -1.5 hypothetical protein compare
PS417_06945 -1.5 -1.0 membrane protein compare
PS417_26260 -1.5 -1.5 hypothetical protein compare
PS417_21070 -1.5 -1.6 aconitate hydratase compare
PS417_01640 -1.5 -3.9 histidine kinase compare
PS417_02700 -1.5 -2.7 urease accessory protein UreG compare
PS417_24935 -1.5 -1.1 hypothetical protein compare
PS417_26770 -1.5 -1.7 tRNA (guanine-N7)-methyltransferase compare
PS417_04080 -1.5 -2.0 peptide ABC transporter substrate-binding protein compare
PS417_02280 -1.5 -1.1 GlcNAc-PI de-N-acetylase compare
PS417_25295 -1.5 -2.2 hypothetical protein compare
PS417_02225 -1.5 -2.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_07710 -1.4 -4.5 membrane protein compare
PS417_17780 -1.4 -1.2 Ais protein compare
PS417_15095 -1.4 -2.3 hypothetical protein compare
PS417_18455 -1.4 -2.1 hypothetical protein compare
PS417_13075 -1.4 -1.3 hypothetical protein compare
PS417_23995 -1.4 -0.7 preprotein translocase subunit SecG compare
PS417_20125 -1.4 -3.8 phosphoribosylglycinamide formyltransferase compare
PS417_06245 -1.4 -1.4 zinc metallopeptidase RseP compare
PS417_10425 -1.4 -1.6 hypothetical protein compare
PS417_03260 -1.4 -1.0 5S ribosomal RNA compare
PS417_21655 -1.4 -0.8 aspartate kinase compare
PS417_18070 -1.3 -1.0 general secretion pathway protein GspH compare
PS417_05815 -1.3 -3.1 recombinase RecA compare
PS417_03875 -1.3 -2.0 membrane protein compare
PS417_24585 -1.3 -6.5 AMP nucleosidase compare
PS417_07560 -1.3 -1.4 universal stress protein UspA compare
PS417_15820 -1.3 -2.1 universal stress protein UspA compare
PS417_27425 -1.3 -5.2 exopolyphosphatase compare
PS417_03165 -1.3 -3.4 hypothetical protein compare
PS417_22935 -1.3 -2.4 hypothetical protein compare
PS417_17840 -1.3 -1.7 betaine-aldehyde dehydrogenase compare
PS417_28070 -1.3 -4.9 phosphate ABC transporter ATP-binding protein compare
PS417_10680 -1.3 -2.1 enoyl-CoA hydratase compare
PS417_27640 -1.3 -1.0 TetR family transcriptional regulator compare
PS417_08365 -1.2 -0.9 hypothetical protein compare
PS417_27195 -1.2 -1.2 N-acetylglutamate synthase compare
PS417_24155 -1.2 -1.6 ATP-binding protein compare
PS417_10810 -1.2 -1.9 hypothetical protein compare
PS417_04650 -1.2 -0.6 D-alanine--D-alanine ligase compare
PS417_21510 -1.2 -1.4 histidine kinase compare
PS417_27305 -1.2 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PS417_05595 -1.2 -4.4 ornithine carbamoyltransferase compare
PS417_27870 -1.2 -2.5 ATP-dependent DNA helicase RecG compare
PS417_05575 -1.2 -5.6 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_14080 -1.2 -2.6 hypothetical protein compare
PS417_01435 -1.2 -1.0 hypothetical protein compare
PS417_21680 -1.2 -4.1 succinylglutamate desuccinylase compare
PS417_18055 -1.2 -1.2 general secretion pathway protein GspK compare
PS417_08125 -1.2 -0.4 prephenate dehydratase compare
PS417_28080 -1.2 -7.2 phosphate ABC transporter permease compare
PS417_03300 -1.2 -2.4 alanine acetyltransferase compare
PS417_07820 -1.2 -1.7 transposase compare
PS417_23900 -1.2 -5.4 poly(A) polymerase compare
PS417_13735 -1.2 -1.3 hypothetical protein compare
PS417_05365 -1.1 -1.3 FAD-binding protein compare
PS417_12870 -1.1 -1.7 enoyl-CoA hydratase compare
PS417_05100 -1.1 -1.3 RNA polymerase sigma factor compare
PS417_19350 -1.1 -2.4 GTP cyclohydrolase compare
PS417_03705 -1.1 -2.4 2-alkenal reductase compare
PS417_17215 -1.1 -1.9 peptidylprolyl isomerase compare
PS417_22620 -1.1 -2.7 pyruvate kinase compare
PS417_25390 -1.1 -2.8 MFS transporter compare
PS417_16310 -1.1 -3.5 membrane protein compare
PS417_04595 -1.1 -1.7 cell division protein MraZ compare
PS417_15885 -1.1 -1.4 GCN5 family acetyltransferase compare
PS417_02475 -1.1 -1.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_08045 -1.1 -1.8 uracil permease compare
PS417_02705 -1.1 -1.5 urease accessory protein UreF compare
PS417_28450 -1.1 -1.1 XRE family transcriptional regulator compare
PS417_17930 -1.1 -2.4 aldehyde dehydrogenase compare
PS417_17855 -1.1 -2.4 major facilitator transporter compare
PS417_13870 -1.1 -3.0 hypothetical protein compare
PS417_06200 -1.1 -3.4 protein-PII uridylyltransferase compare
PS417_24835 -1.1 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments