Experiment set19IT007 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_34

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.8 -4.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0082 -5.8 -5.6 tryptophan synthase alpha chain compare
PP_0083 -4.7 -8.5 tryptophan synthase beta chain compare
PP_2371 -4.2 -8.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0292 -4.0 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5347 -3.9 -13.6 pyruvate carboxylase subunit A compare
PP_1995 -3.8 -11.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -3.8 -11.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4696 -3.7 -7.5 Nitrogen regulation protein NR(I) compare
PP_0289 -3.7 -6.8 Imidazoleglycerol-phosphate dehydratase compare
PP_1079 -3.6 -8.1 Ornithine carbamoyltransferase compare
PP_5098 -3.5 -9.5 methionine biosynthesis protein MetW compare
PP_0966 -3.5 -10.8 Histidinol dehydrogenase compare
PP_5346 -3.5 -9.5 pyruvate carboxylase subunit B compare
PP_5014 -3.3 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_2862 -3.2 -8.9 Undecaprenyl-diphosphatase compare
PP_3999 -3.1 -9.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5289 -3.0 -4.9 Acetylglutamate kinase compare
PP_4890 -3.0 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5155 -2.9 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2168 -2.9 -11.6 Transaldolase compare
PP_1898 -2.9 -4.1 MotA/TolQ/ExbB proton channel family protein compare
PP_2370 -2.9 -3.9 conserved protein of unknown function compare
PP_5348 -2.8 -8.7 Transcriptional regulator, LysR family compare
PP_0422 -2.7 -6.8 Indole-3-glycerol phosphate synthase compare
PP_1988 -2.7 -8.6 3-isopropylmalate dehydrogenase compare
PP_3511 -2.7 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_0787 -2.6 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5097 -2.6 -12.4 homoserine O-acetyltransferase compare
PP_1231 -2.6 -7.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5185 -2.6 -6.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5095 -2.6 -1.8 pyrroline-5-carboxylate reductase compare
PP_4678 -2.6 -13.7 Ketol-acid reductoisomerase compare
PP_0291 -2.5 -3.8 conserved protein of unknown function compare
PP_0735 -2.5 -3.3 molybdopterin-synthase adenylyltransferase compare
PP_2001 -2.5 -9.7 O-succinylhomoserine sulfhydrylase compare
PP_1088 -2.5 -11.3 Argininosuccinate synthase compare
PP_1022 -2.5 -6.9 glucose 6-phosphate-1-dehydrogenase compare
PP_0184 -2.5 -7.1 Argininosuccinate lyase compare
PP_2327 -2.4 -7.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4909 -2.4 -8.4 phosphoserine phosphatase compare
PP_4804 -2.4 -4.2 RlpA-like lipoprotein compare
PP_4700 -2.3 -2.7 pantothenate synthetase compare
PP_0362 -2.3 -11.1 Biotin synthase compare
PP_1985 -2.2 -6.7 3-isopropylmalate dehydratase large subunit compare
PP_0421 -2.2 -8.2 Anthranilate phosphoribosyltransferase compare
PP_1025 -2.2 -10.4 2-isopropylmalate synthase compare
PP_1986 -2.2 -3.6 3-isopropylmalate dehydratase small subunit compare
PP_5128 -2.2 -6.7 Dihydroxy-acid dehydratase compare
PP_4984 -2.2 -10.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4943 -2.1 -3.4 putative Glycosyl transferase compare
PP_0965 -2.1 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5015 -2.1 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0290 -2.1 -5.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4936 -2.0 -9.8 O-antigen polymerase compare
PP_1733 -2.0 -4.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_4680 -2.0 -10.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4994 -2.0 -8.2 conserved protein of unknown function compare
PP_2328 -2.0 -6.1 Phosphoadenosine phosphosulfate reductase compare
PP_4679 -2.0 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -2.0 -13.1 Anthranilate synthase component 1 compare
PP_3417 -1.9 -7.8 D-gluconate transporter compare
PP_0363 -1.9 -10.3 8-amino-7-oxononanoate synthase compare
PP_4785 -1.8 -7.0 conserved exported protein of unknown function compare
PP_0366 -1.8 -7.4 dethiobiotin synthetase compare
PP_5217 -1.8 -9.4 Polyphosphate kinase compare
PP_0719 -1.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_0364 -1.8 -6.5 pimeloyl-[acp] methyl ester esterase compare
PP_0365 -1.7 -8.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5303 -1.7 -6.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2402 -1.7 -2.9 putative Sensor histidine kinase compare
PP_3105 -1.7 -2.2 conserved membrane protein of unknown function compare
PP_1654 -1.6 -3.6 cysteine synthase B compare
PP_0420 -1.6 -5.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1362 -1.6 -4.3 pyruvate kinase II compare
PP_4938 -1.5 -8.6 putative Glycosyl transferase compare
PP_4699 -1.5 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1426 -1.4 -8.7 L-aspartate oxidase compare
PP_1872 -1.4 -7.1 glutamate-pyruvate aminotransferase compare
PP_4693 -1.4 -3.6 RNA polymerase-binding transcription factor DksA compare
PP_1664 -1.4 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4902 -1.4 -2.8 Oligoribonuclease compare
PP_4989 -1.3 -3.3 Protein PilJ compare
PP_4940 -1.3 -7.9 Putative glycosyltransferase compare
PP_4129 -1.3 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3378 -1.2 -3.0 putative 2-ketogluconokinase compare
PP_2302 -1.2 -4.4 DNA-binding, ATP-dependent protease compare
PP_1233 -1.2 -4.0 sulfurtransferase compare
PP_5350 -1.2 -3.2 Transcriptional regulator, RpiR family compare
PP_0547 -1.2 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5104 -1.2 -6.9 thiazole synthase compare
PP_1217 -1.1 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1778 -1.1 -5.9 Lipopolysaccharide ABC export system, permease protein compare
PP_5639 -1.1 -5.7 conserved exported protein of unknown function compare
PP_3824 -1.1 -2.3 conserved exported protein of unknown function compare
PP_2253 -1.1 -1.6 Transcriptional regulator, GntR family compare
PP_4480 -1.1 -5.4 arginine N-succinyltransferase, subunit alpha compare
PP_4695 -1.1 -6.5 Sensory box histidine kinase compare
PP_3241 -1.1 -1.7 conserved exported protein of unknown function compare
PP_5035 -1.1 -5.3 Histidine utilization repressor compare
PP_1783 -1.1 -1.4 dTDP-glucose pyrophosphorylase compare
PP_1679 -1.1 -3.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1912 -1.1 -3.1 Phosphate acyltransferase compare
PP_1779 -1.1 -5.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2070 -1.1 -2.2 Transcriptional regulator, AraC family compare
PP_4561 -1.1 -1.2 stress response protein compare
PP_1656 -1.0 -3.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_4964 -1.0 -2.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1513 -1.0 -3.1 Ribosomal RNA small subunit methyltransferase J compare
PP_1468 -1.0 -2.3 Tyrosine recombinase XerD compare
PP_5039 -1.0 -3.2 conserved protein of unknown function compare
PP_1304 -1.0 -5.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2416 -1.0 -2.9 putative Iron ABC transporter, ATP-binding protein compare
PP_0393 -1.0 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2163 -1.0 -4.5 VacJ lipoprotein compare
PP_3508 -1.0 -3.9 Protein CobW compare
PP_0874 -1.0 -2.5 conserved protein of unknown function compare
PP_0022 -1.0 -1.2 hypothetical protein compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_0377 -0.9 -1.1 coenzyme PQQ synthesis protein D compare
PP_5028 -0.9 -2.9 proline iminopeptidase compare
PP_2378 -0.9 -1.9 Fe/S biogenesis protein NfuA compare
PP_5619 -0.9 -3.7 protein of unknown function compare
PP_1808 -0.9 -2.7 glucose-6-phosphate isomerase compare
PP_1381 -0.9 -1.3 4-carboxymuconolactone decarboxylase compare
PP_4977 -0.9 -5.8 5,10-methylenetetrahydrofolate reductase compare
PP_1734 -0.9 -3.0 Probable septum site-determining protein MinC compare
PP_4126 -0.9 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_t29 -0.9 -1.3 tRNA-Ala compare
PP_5331 -0.9 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_4199 -0.9 -1.1 putative Lipoprotein compare
PP_2900 -0.9 -2.7 conserved protein of unknown function compare
PP_0958 -0.8 -3.2 phospholipid ABC transporter ATP-binding subunit compare
PP_4724 -0.8 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_0959 -0.8 -2.1 phospholipid ABC transporter compare
PP_4004 -0.8 -2.7 DNA translocase FtsK compare
PP_4419 -0.8 -2.8 transposase compare
PP_0138 -0.8 -5.6 conserved membrane protein of unknown function compare
PP_4131 -0.8 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_0961 -0.8 -3.8 toluene tolerance protein compare
PP_4387 -0.8 -2.5 conserved exported protein of unknown function compare
PP_2441 -0.8 -2.0 conserved protein of unknown function compare
PP_4787 -0.8 -1.7 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1353 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_4471 -0.8 -3.3 Magnesium transporter compare
PP_4364 -0.8 -2.3 putative Anti-sigma F factor antagonist compare
PP_1303 -0.8 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_5628 -0.8 -1.9 conserved protein of unknown function compare
PP_1097 -0.8 -0.9 Methionine--tRNA ligase compare
PP_5582 -0.8 -1.2 conserved protein of unknown function compare
PP_1215 -0.8 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_1764 -0.8 -2.3 Phosphoglycolate phosphatase 2 compare
PP_2903 -0.8 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1994 -0.8 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_4782 -0.8 -2.5 Phosphomethylpyrimidine kinase compare
PP_1198 -0.8 -1.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1017 -0.8 -4.3 mannose/glucose ABC transporter, permease protein compare
PP_5320 -0.8 -3.8 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_4338 -0.8 -4.7 Chemotaxis histidine kinase CheA compare
PP_2337 -0.8 -2.2 aconitate isomerase compare
PP_4058 -0.8 -4.5 1,4-alpha-glucan branching enzyme compare
PP_5507 -0.8 -1.8 protein of unknown function compare
PP_2345 -0.8 -2.0 conserved exported protein of unknown function compare
PP_5017 -0.8 -1.0 Sec-independent protein translocase protein TatB compare
PP_2511 -0.8 -1.7 conserved protein of unknown function compare
PP_5471 -0.8 -1.0 putative response regulator receiver protein compare
PP_4340 -0.7 -3.1 response regulator for chemotactic signal transduction compare
PP_1011 -0.7 -3.6 glucokinase compare
PP_2442 -0.7 -1.6 conserved protein of unknown function, DUF480 family compare
PP_4988 -0.7 -3.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4828 -0.7 -1.1 Precorrin-8X methylmutase compare
PP_5203 -0.7 -3.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_1655 -0.7 -1.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4124 -0.7 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_2088 -0.7 -1.5 RNA polymerase sigma factor SigX compare
PP_4254 -0.7 -1.3 conserved protein of unknown function compare
PP_4356 -0.7 -2.3 Flagellar protein FliO compare
PP_5054 -0.7 -1.5 glutaredoxin 3 compare
PP_2375 -0.7 -5.6 cobalamin-dependent methionine synthase compare
PP_3102 -0.7 -2.7 conserved protein of unknown function compare
PP_3505 -0.7 -1.0 conserved protein of unknown function compare
PP_3392 -0.7 -1.5 conserved protein of unknown function compare
PP_1013 -0.7 -2.9 Sensor histidine kinase compare
PP_5227 -0.7 -3.7 diaminopimelate decarboxylase compare
PP_1528 -0.7 -1.3 conserved protein of unknown function compare
PP_4296 -0.7 -1.5 conserved exported protein of unknown function compare
PP_1216 -0.7 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1224 -0.7 -3.9 periplasmic subunit of the TolQRA transport system compare
PP_4832 -0.7 -2.3 Precorrin-6x reductase compare
PP_1845 -0.7 -2.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_4392 -0.7 -4.0 chemotaxis protein methyltransferase compare
PP_4811 -0.7 -3.1 Gamma-glutamyl phosphate reductase compare
PP_0381 -0.7 -3.5 Coenzyme PQQ synthesis protein F compare
PP_0405 -0.7 -3.8 conserved protein of unknown function compare
PP_4880 -0.7 -3.8 exoribonuclease R compare
PP_1016 -0.7 -4.4 mannose/glucose ABC transporter, permease protein compare
PP_5315 -0.7 -1.5 Rubredoxin-1 compare
PP_1926 -0.6 -1.5 putative phosphotyrosine-protein phosphatase compare
PP_0435 -0.6 -3.4 Peptidase, M23/M37 family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms