Experiment set19IT007 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_34

200 most detrimental genes:

  gene name fitness t score description  
PP_0804 +1.5 12.4 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_1623 +1.4 11.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_0803 +1.4 9.8 Protein secretion ABC efflux system, membrane fusion protein compare
PP_0806 +1.3 12.6 putative Surface adhesion protein compare
PP_0805 +1.3 8.9 Outer membrane efflux protein compare
PP_4136 +1.2 2.1 Transcriptional regulator, LuxR family compare
PP_1113 +1.2 10.5 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4373 +1.1 9.8 Transcriptional regulator FleQ compare
PP_0168 +1.1 10.0 putative surface adhesion protein compare
PP_5328 +1.1 2.2 putative phosphate transport system permease protein compare
PP_0166 +1.0 8.8 HlyD family secretion protein compare
PP_5456 +1.0 2.9 conserved protein of unknown function compare
PP_0630 +1.0 2.2 DNA gyrase inhibitor YacG compare
PP_5475 +1.0 2.4 conserved protein of unknown function compare
PP_4519 +1.0 8.5 Agglutination protein compare
PP_4874 +1.0 1.6 50S ribosomal protein L9 compare
PP_5145 +1.0 8.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5748 +1.0 1.2 cytochrome c heme lyase subunit compare
PP_2889 +1.0 5.7 putative Transmembrane regulator PrtR compare
PP_0574 +0.9 8.0 DNA-binding response regulator, LuxR family compare
PP_3551 +0.9 2.4 DNA-binding response regulator, LuxR family compare
PP_0167 +0.9 8.5 Toxin secretion ATP-binding protein compare
PP_5022 +0.9 2.2 Glutamine transport ATP-binding protein GlnQ compare
PP_1186 +0.9 1.7 two component system DNA-binding transcriptional dual regulator compare
PP_1410 +0.9 1.4 conserved protein of unknown function compare
PP_0440 +0.9 4.3 Elongation factor Tu-A compare
PP_4223 +0.9 2.6 diaminobutyrate-2-oxoglutarate transaminase compare
PP_5084 +0.9 6.5 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5572 +0.9 3.6 protein of unknown function compare
PP_5073 +0.8 2.7 conserved exported protein of unknown function compare
PP_5093 +0.8 2.2 twitching motility protein compare
PP_0165 +0.8 6.9 GGDEF domain protein compare
PP_4171 +0.8 7.0 conserved exported protein of unknown function compare
PP_3365 +0.8 1.5 Acetolactate synthase compare
PP_0593 +0.8 1.3 putative ribosome-binding factor compare
PP_3519 +0.7 1.4 putative Lipoprotein compare
PP_3761 +0.7 5.6 Sensor histidine kinase/response regulator compare
PP_5528 +0.7 1.9 conserved protein of unknown function compare
PP_1317 +0.7 2.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4342 +0.7 3.0 flagellar synthesis regulator, putative ATPase compare
PP_5232 +0.7 2.6 conserved protein of unknown function compare
PP_3398 +0.7 2.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3726 +0.7 0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_5337 +0.7 3.2 LysR family transcriptional regulator compare
PP_1112 +0.7 4.2 conserved membrane protein of unknown function compare
PP_1683 +0.7 1.9 Transcriptional regulator, MarR family compare
PP_0414 +0.6 3.0 Polyamine ABC transporter, permease protein compare
PP_4256 +0.6 4.0 cytochrome c oxidase subunit, cbb3-type compare
PP_4098 +0.6 1.8 UvrABC system protein C compare
PP_4997 +0.6 1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0653 +0.6 1.4 conserved protein of unknown function compare
PP_0355 +0.6 2.1 Response regulator compare
PP_5053 +0.6 4.3 Protein-export protein SecB compare
PP_t11 +0.6 1.8 tRNA-Lys compare
PP_4363 +0.6 4.4 Sensor histidine kinase/response regulator compare
PP_4720 +0.6 1.8 putative RNA binding protein compare
PP_0891 +0.6 1.8 conserved exported protein of unknown function compare
PP_4952 +0.6 1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5580 +0.6 1.6 protein of unknown function compare
PP_4262 +0.6 1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5051 +0.6 1.9 conserved protein of unknown function compare
PP_4162 +0.6 2.3 conserved membrane protein of unknown function compare
PP_2379 +0.5 2.5 putative cytochrome oxidase biogenesis protein compare
PP_4204 +0.5 2.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1442 +0.5 1.9 conserved protein of unknown function compare
PP_0627 +0.5 1.6 conserved protein of unknown function compare
PP_4959 +0.5 4.4 diguanylate cyclase compare
PP_1325 +0.5 2.9 putative lipoprotein compare
PP_1650 +0.5 4.7 Sensor protein GacS compare
PP_5162 +0.5 2.4 conserved exported protein of unknown function compare
PP_5709 +0.5 2.7 protein of unknown function compare
PP_1824 +0.5 1.4 Smr domain protein compare
PP_1176 +0.5 1.7 conserved protein of unknown function compare
PP_0250 +0.5 2.2 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5216 +0.5 1.1 exopolyphosphatase compare
PP_0937 +0.5 2.5 endoribonuclease G (RNAse G) compare
PP_1190 +0.5 1.7 conserved protein of unknown function compare
PP_5255 +0.5 1.9 putative hydrolase compare
PP_3840 +0.5 1.2 conserved protein of unknown function compare
PP_3971 +0.5 1.1 conserved protein of unknown function compare
PP_0948 +0.5 1.3 Phosphocarrier protein HPr compare
PP_2313 +0.5 1.7 conserved membrane protein of unknown function compare
PP_1404 +0.5 1.5 conserved protein of unknown function compare
PP_3312 +0.5 1.0 putative Heat shock protein compare
PP_4343 +0.5 2.6 Flagellar biosynthesis protein FlhF compare
PP_1494 +0.5 2.3 Response regulator/GGDEF domain protein compare
PP_0352 +0.5 2.8 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_5001 +0.5 1.2 protease HslVU, ATPase component compare
PP_0191 +0.5 2.2 Transcriptional regulatory protein AlgQ compare
PP_2972 +0.5 1.0 conserved protein of unknown function compare
PP_1038 +0.5 1.2 conserved protein of unknown function compare
PP_2053 +0.5 1.9 conserved protein of unknown function compare
PP_3043 +0.5 1.0 conserved protein of unknown function compare
PP_2648 +0.5 2.0 Universal stress protein family compare
PP_1164 +0.5 0.6 Transcriptional regulator, LysR family compare
PP_2759 +0.5 1.4 ribose ABC transporter - ATP-binding subunit compare
PP_3359 +0.5 0.9 putative Hydroxycinnamic acid degradation regulator compare
PP_4261 +0.5 1.8 cation-transporting P-type ATPase compare
PP_0632 +0.5 2.3 leader peptidase/N-methyltransferase compare
PP_5167 +0.5 1.6 conserved hypothetical protein compare
PP_2122 +0.5 1.5 molybdenum cofactor biosynthesis protein B compare
PP_1864 +0.5 1.4 conserved protein of unknown function compare
PP_4099 +0.4 4.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5701 +0.4 1.1 conserved protein of unknown function compare
PP_5198 +0.4 1.1 conserved protein of unknown function compare
PP_2650 +0.4 1.8 putative 4-hydroxybutyrate dehydrogenase compare
PP_4247 +0.4 1.0 Exonuclease compare
PP_1706 +0.4 2.1 Nitrite reductase compare
PP_2765 +0.4 1.1 putative Sulfonate monooxygenase MsuD compare
PP_4172 +0.4 2.4 conserved exported protein of unknown function compare
PP_0674 +0.4 3.0 ADP/ATP ratio sensor and inhibitor of translation compare
PP_5423 +0.4 1.3 conserved membrane protein of unknown function compare
PP_2054 +0.4 1.8 putative DNA-binding transcriptional regulator compare
PP_4350 +0.4 2.2 Aminotransferase, class V, NifS/IscS family compare
PP_2150 +0.4 1.7 putative Thiamine biosynthesis lipoprotein compare
PP_1956 +0.4 2.3 conserved exported protein of unknown function compare
PP_4226 +0.4 1.8 conserved protein of unknown function compare
PP_1109 +0.4 3.6 Transcriptional regulator, GntR family compare
PP_1713 +0.4 1.3 Transcriptional regulator PcaQ compare
PP_2858 +0.4 1.9 conserved exported protein of unknown function compare
PP_1020 +0.4 1.3 putative glucose-6-phosphate 1-epimerase compare
PP_5687 +0.4 2.1 putative permease of the major facilitator superfamily compare
PP_0401 +0.4 1.5 Ribosomal RNA small subunit methyltransferase A compare
PP_1054 +0.4 0.7 Type II secretion pathway protein XcpZ compare
PP_3353 +0.4 1.9 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_2125 +0.4 1.7 lipid kinase compare
PP_5329 +0.4 1.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1096 +0.4 1.4 putative electron transport complex protein compare
PP_1690 +0.4 1.9 conserved protein of unknown function compare
PP_2079 +0.4 2.3 conserved protein of unknown function compare
PP_3048 +0.4 1.6 conserved protein of unknown function compare
PP_4444 +0.4 2.3 transposase compare
PP_2958 +0.4 1.3 Glutaredoxin compare
PP_2568 +0.4 0.8 Ring-cleaving dioxygenase compare
PP_1028 +0.4 1.7 Transcriptional regulator, LysR family compare
PP_5569 +0.4 1.4 protein of unknown function of phage origin compare
PP_0685 +0.4 1.2 conserved protein of unknown function compare
PP_1364 +0.4 2.7 conserved exported protein of unknown function compare
PP_4685 +0.4 2.4 conserved protein of unknown function compare
PP_1428 +0.4 0.7 Sigma factor AlgU negative regulatory protein compare
PP_3874 +0.4 1.2 conserved protein of unknown function compare
PP_3685 +0.4 1.9 conserved protein of unknown function compare
PP_3089 +0.4 1.6 conserved protein of unknown function compare
PP_1208 +0.4 0.5 conserved protein of unknown function, SlyX family compare
PP_0556 +0.4 1.2 Acetoin catabolism protein compare
PP_3415 +0.4 1.9 Transcriptional regulator, LacI family compare
PP_5066 +0.4 2.0 K(+)/H(+) antiporter NhaP2 compare
PP_3447 +0.4 0.7 conserved membrane protein of unknown function compare
PP_1510 +0.4 1.8 putative Carboxyvinyl-carboxyphosphonate phosphorylmutase compare
PP_3831 +0.4 1.9 conserved protein of unknown function compare
PP_4179 +0.4 2.6 Chaperone protein HtpG compare
PP_2260 +0.4 2.3 putative glycerol-phosphate ABC transporter, ATP-binding protein compare
PP_0534 +0.4 2.1 putative Transcriptional regulator PfeR compare
PP_5698 +0.4 1.9 conserved exported protein of unknown function compare
PP_1855 +0.4 1.4 conserved exported protein of unknown function compare
PP_4424 +0.4 0.9 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2483 +0.4 2.1 conserved protein of unknown function compare
PP_1605 +0.4 1.2 Ribonuclease HII compare
PP_3051 +0.4 1.5 Pyocin R2_PP, tail spike protein compare
PP_5485 +0.4 1.7 putative N-acetyltransferase, GNAT domain compare
PP_1730 +0.4 2.5 Probable M18 family aminopeptidase 2 compare
PP_1862 +0.4 1.6 conserved membrane protein of unknown function compare
PP_4273 +0.4 0.8 Transcriptional regulator, MerR family compare
PP_0494 +0.4 2.4 selenocysteyl-tRNA-specific translation elongation factor compare
PP_5552 +0.4 0.9 conserved protein of unknown function compare
PP_4946 +0.4 2.4 sodium/L-proline transporter compare
PP_0306 +0.4 1.0 conserved protein of unknown function compare
PP_4846 +0.4 1.8 L-amino acid N-acyltransferase compare
PP_4180 +0.4 1.2 conserved protein of unknown function compare
PP_2525 +0.4 1.4 conserved protein of unknown function compare
PP_2189 +0.4 1.5 conserved protein of unknown function compare
PP_1429 +0.4 2.1 Sigma factor AlgU regulatory protein MucB compare
PP_0916 +0.4 1.3 Amino acid transporter LysE compare
PP_2695 +0.4 1.2 Transcriptional regulator, LysR family compare
PP_3693 +0.4 1.5 putative Transcriptional regulator MvaT, P16 subunit compare
PP_2144 +0.4 1.1 Transcriptional regulator, TetR family compare
PP_1122 +0.4 0.6 OmpA family protein compare
PP_3744 +0.4 1.9 transcriptional dual regulator GlcC-Glycolate compare
PP_3808 +0.4 1.1 Antibiotic synthesis protein MbtH compare
PP_5625 +0.4 1.2 conserved protein of unknown function compare
PP_0333 +0.4 2.2 conserved exported protein of unknown function compare
PP_4265 +0.4 0.5 DNA-binding transcriptional dual regulator compare
PP_2309 +0.4 0.7 conserved protein of unknown function compare
PP_3762 +0.4 1.9 Response regulator compare
PP_5705 +0.4 0.8 protein of unknown function compare
PP_0412 +0.4 2.0 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_3274 +0.4 2.2 ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit compare
PP_0704 +0.4 2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3194 +0.4 1.3 conserved protein of unknown function compare
PP_2715 +0.4 1.7 ArsH protein compare
PP_0326 +0.4 1.1 sarcosine oxidase subunit gamma compare
PP_2714 +0.4 2.1 Sensor histidine kinase compare
PP_4504 +0.3 0.9 conserved exported protein of unknown function compare
PP_2318 +0.3 1.8 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_0281 +0.3 2.1 Amino acid ABC transporter, permease protein compare
PP_2803 +0.3 1.4 1,3-propanediol dehydrogenase compare
PP_1352 +0.3 1.4 UPF0234 protein PP_1352 compare
PP_2675 +0.3 1.3 Cytochrome c-type protein compare
PP_4904 +0.3 2.3 Flagellar motor rotation protein compare
PP_1005 +0.3 1.7 Heme oxygenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms