Experiment set19IT006 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_21

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.1 -4.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -7.0 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.5 -9.9 3-isopropylmalate dehydrogenase compare
PP_3511 -6.4 -9.8 Branched-chain-amino-acid aminotransferase compare
PP_4679 -6.1 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0083 -6.0 -5.9 tryptophan synthase beta chain compare
PP_4678 -5.7 -19.1 Ketol-acid reductoisomerase compare
PP_1986 -5.6 -5.4 3-isopropylmalate dehydratase small subunit compare
PP_0422 -5.5 -7.8 Indole-3-glycerol phosphate synthase compare
PP_4680 -5.5 -19.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5014 -5.5 -3.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_2168 -5.5 -14.2 Transaldolase compare
PP_0082 -5.4 -9.0 tryptophan synthase alpha chain compare
PP_1995 -5.4 -11.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1079 -5.2 -9.9 Ornithine carbamoyltransferase compare
PP_5098 -5.0 -11.1 methionine biosynthesis protein MetW compare
PP_4696 -5.0 -5.9 Nitrogen regulation protein NR(I) compare
PP_0966 -4.8 -11.7 Histidinol dehydrogenase compare
PP_0967 -4.7 -13.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4909 -4.7 -8.5 phosphoserine phosphatase compare
PP_3999 -4.7 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5347 -4.5 -14.1 pyruvate carboxylase subunit A compare
PP_0184 -4.5 -8.2 Argininosuccinate lyase compare
PP_5289 -4.4 -5.8 Acetylglutamate kinase compare
PP_5097 -4.4 -15.3 homoserine O-acetyltransferase compare
PP_0292 -4.4 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5185 -4.4 -8.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0965 -4.2 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0417 -4.2 -16.8 Anthranilate synthase component 1 compare
PP_5128 -4.2 -7.0 Dihydroxy-acid dehydratase compare
PP_2001 -4.2 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_0421 -4.1 -9.3 Anthranilate phosphoribosyltransferase compare
PP_4890 -4.0 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_1654 -4.0 -3.9 cysteine synthase B compare
PP_0289 -4.0 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_2370 -3.9 -5.3 conserved protein of unknown function compare
PP_5015 -3.8 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5303 -3.8 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1088 -3.8 -13.5 Argininosuccinate synthase compare
PP_2371 -3.7 -8.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0290 -3.7 -6.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0735 -3.5 -3.2 molybdopterin-synthase adenylyltransferase compare
PP_5348 -3.5 -9.0 Transcriptional regulator, LysR family compare
PP_5346 -3.3 -6.9 pyruvate carboxylase subunit B compare
PP_2327 -3.1 -8.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -3.1 -10.8 2-isopropylmalate synthase compare
PP_4804 -3.0 -4.6 RlpA-like lipoprotein compare
PP_5155 -3.0 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4700 -3.0 -2.0 pantothenate synthetase compare
PP_5095 -2.9 -2.0 pyrroline-5-carboxylate reductase compare
PP_1022 -2.9 -6.1 glucose 6-phosphate-1-dehydrogenase compare
PP_4936 -2.8 -14.0 O-antigen polymerase compare
PP_0366 -2.8 -8.2 dethiobiotin synthetase compare
PP_0362 -2.7 -12.1 Biotin synthase compare
PP_0363 -2.6 -12.6 8-amino-7-oxononanoate synthase compare
PP_0365 -2.5 -9.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0364 -2.5 -9.1 pimeloyl-[acp] methyl ester esterase compare
PP_3417 -2.4 -6.5 D-gluconate transporter compare
PP_4984 -2.4 -9.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5104 -2.4 -13.0 thiazole synthase compare
PP_4058 -2.3 -10.7 1,4-alpha-glucan branching enzyme compare
PP_5217 -2.3 -11.6 Polyphosphate kinase compare
PP_0420 -2.2 -6.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2328 -2.2 -7.2 Phosphoadenosine phosphosulfate reductase compare
PP_4785 -2.1 -8.1 conserved exported protein of unknown function compare
PP_1912 -2.1 -6.1 Phosphate acyltransferase compare
PP_1362 -2.1 -5.0 pyruvate kinase II compare
PP_4902 -2.0 -3.3 Oligoribonuclease compare
PP_1664 -2.0 -3.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4938 -2.0 -11.2 putative Glycosyl transferase compare
PP_2402 -2.0 -2.7 putative Sensor histidine kinase compare
PP_1733 -1.9 -4.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0291 -1.9 -1.7 conserved protein of unknown function compare
PP_1231 -1.9 -5.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4004 -1.9 -4.7 DNA translocase FtsK compare
PP_1898 -1.8 -4.5 MotA/TolQ/ExbB proton channel family protein compare
PP_5320 -1.8 -9.1 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_4994 -1.8 -6.6 conserved protein of unknown function compare
PP_1734 -1.8 -4.7 Probable septum site-determining protein MinC compare
PP_4782 -1.8 -4.7 Phosphomethylpyrimidine kinase compare
PP_2388 -1.7 -3.7 Transporter, LysE family compare
PP_4480 -1.7 -8.4 arginine N-succinyltransferase, subunit alpha compare
PP_3241 -1.7 -2.3 conserved exported protein of unknown function compare
PP_4099 -1.7 -16.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1011 -1.6 -7.5 glucokinase compare
PP_1656 -1.6 -6.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4964 -1.6 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_2144 -1.6 -3.6 Transcriptional regulator, TetR family compare
PP_2390 -1.6 -7.9 Transcriptional regulator, LysR family compare
PP_0872 -1.5 -6.6 Peptide chain release factor 3 compare
PP_0377 -1.5 -2.2 coenzyme PQQ synthesis protein D compare
PP_1650 -1.5 -12.9 Sensor protein GacS compare
PP_0787 -1.5 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1428 -1.5 -1.9 Sigma factor AlgU negative regulatory protein compare
PP_0393 -1.5 -2.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5321 -1.5 -7.0 two-component system sensory histidine kinase conserved
PP_4693 -1.4 -3.7 RNA polymerase-binding transcription factor DksA compare
PP_1655 -1.4 -2.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5639 -1.4 -7.9 conserved exported protein of unknown function compare
PP_1233 -1.4 -3.5 sulfurtransferase compare
PP_3880 -1.4 -2.2 conserved exported protein of unknown function compare
PP_3821 -1.3 -8.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1217 -1.3 -5.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1568 -1.3 -1.9 conserved protein of unknown function compare
PP_0962 -1.3 -2.6 toluene-tolerance protein compare
PP_5232 -1.3 -3.1 conserved protein of unknown function compare
PP_0001 -1.3 -1.6 probable chromosome-partitioning protein compare
PP_2378 -1.3 -2.9 Fe/S biogenesis protein NfuA compare
PP_0719 -1.3 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0122 -1.3 -4.0 conserved exported protein of unknown function compare
PP_4699 -1.3 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0566 -1.3 -1.7 translation-related factor compare
PP_1778 -1.3 -7.5 Lipopolysaccharide ABC export system, permease protein compare
PP_0339 -1.2 -0.9 Pyruvate dehydrogenase E1 component compare
PP_1303 -1.2 -4.8 Sulfate adenylyltransferase subunit 2 compare
PP_5313 -1.2 -2.7 DNA-binding protein HU-alpha compare
PP_4560 -1.2 -2.1 putative Ribonuclease BN compare
PP_2336 -1.2 -3.7 aconitate hydratase 1 compare
PP_5350 -1.2 -2.8 Transcriptional regulator, RpiR family compare
PP_4922 -1.2 -7.1 Phosphomethylpyrimidine synthase compare
PP_0547 -1.2 -4.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5701 -1.1 -2.3 conserved protein of unknown function compare
PP_1304 -1.1 -6.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4724 -1.1 -0.7 Carbamoyl-phosphate synthase small chain compare
PP_0406 -1.1 -2.8 Nucleotidyltransferase family protein compare
PP_5203 -1.1 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_1994 -1.1 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_0152 -1.1 -1.7 conserved exported protein of unknown function compare
PP_0833 -1.1 -1.3 queuine tRNA-ribosyltransferase compare
PP_1009 -1.0 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1099 -1.0 -2.0 Cold shock protein CapB compare
PP_1770 -1.0 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5248 -1.0 -2.0 putative hydrolase compare
PP_4120 -1.0 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_4479 -1.0 -4.1 arginine N-succinyltransferase, subunit beta compare
PP_1348 -1.0 -5.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0434 -1.0 -4.2 Anhydro-N-acetylmuramic acid kinase compare
PP_1426 -1.0 -6.8 L-aspartate oxidase compare
PP_5310 -1.0 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_5230 -0.9 -1.8 Tyrosine recombinase XerC compare
PP_4910 -0.9 -2.0 conserved protein of unknown function compare
PP_5227 -0.9 -4.9 diaminopimelate decarboxylase compare
PP_2145 -0.9 -1.9 beta-N-acetylglucosaminidase compare
PP_2215 -0.9 -3.4 acetyl-CoA acetyltransferase compare
PP_2892 -0.9 -6.3 conserved exported protein of unknown function compare
PP_2893 -0.9 -7.0 conserved exported protein of unknown function compare
PP_1013 -0.9 -3.8 Sensor histidine kinase compare
PP_5201 -0.9 -2.8 conserved protein of unknown function, UPF0149 family compare
PP_5267 -0.9 -2.6 putative cytochrome c5 compare
PP_4122 -0.9 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0084 -0.8 -4.4 HTH-type transcriptional regulator TrpI compare
PP_3938 -0.8 -1.7 conserved protein of unknown function compare
PP_2070 -0.8 -1.5 Transcriptional regulator, AraC family compare
PP_2908 -0.8 -2.8 DNA-binding transcriptional repressor compare
PP_0378 -0.8 -4.7 Pyrroloquinoline-quinone synthase compare
PP_2389 -0.8 -3.0 conserved protein of unknown function compare
PP_1237 -0.8 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5007 -0.8 -2.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1826 -0.8 -2.0 Hydrolase, isochorismatase family compare
PP_1872 -0.8 -4.6 glutamate-pyruvate aminotransferase compare
PP_5507 -0.8 -1.5 protein of unknown function compare
PP_2862 -0.8 -4.4 Undecaprenyl-diphosphatase compare
PP_5216 -0.8 -1.3 exopolyphosphatase compare
PP_4942 -0.8 -1.4 conserved protein of unknown function compare
PP_5393 -0.8 -1.0 putative metal-binding chaperone compare
PP_4126 -0.8 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_5582 -0.8 -1.2 conserved protein of unknown function compare
PP_3318 -0.8 -1.9 conserved protein of unknown function compare
PP_3164 -0.8 -3.3 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2032 -0.8 -4.2 putative ATPase compare
PP_1779 -0.7 -3.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0775 -0.7 -1.0 conserved protein of unknown function compare
PP_4131 -0.7 -3.2 NADH-quinone oxidoreductase subunit N compare
PP_2081 -0.7 -3.9 putative phosphoenolpyruvate synthase regulatory protein compare
PP_1444 -0.7 -5.6 quinoprotein glucose dehydrogenase compare
PP_0240 -0.7 -2.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1493 -0.7 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4129 -0.7 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5204 -0.7 -3.3 conserved protein of unknown function compare
PP_1018 -0.7 -4.3 mannose/glucose ABC transporter - ATP binding subunit compare
PP_1381 -0.7 -1.1 4-carboxymuconolactone decarboxylase compare
PP_0961 -0.7 -4.1 toluene tolerance protein compare
PP_0261 -0.7 -3.2 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4695 -0.7 -4.5 Sensory box histidine kinase compare
PP_3902 -0.7 -2.0 conserved protein of unknown function compare
PP_5026 -0.7 -4.9 Glucans biosynthesis protein G compare
PP_4130 -0.7 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2302 -0.7 -2.5 DNA-binding, ATP-dependent protease compare
PP_5183 -0.7 -3.2 glutamylpolyamine synthetase compare
PP_1605 -0.7 -2.4 Ribonuclease HII compare
PP_1224 -0.7 -3.4 periplasmic subunit of the TolQRA transport system compare
PP_5146 -0.7 -3.8 RNA pyrophosphohydrolase compare
PP_1783 -0.7 -1.2 dTDP-glucose pyrophosphorylase compare
PP_3695 -0.7 -3.6 conserved protein of unknown function compare
PP_2414 -0.7 -1.0 conserved exported protein of unknown function compare
PP_1553 -0.7 -0.8 conserved protein of unknown function compare
PP_1575 -0.7 -1.5 conserved protein of unknown function compare
PP_4532 -0.6 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0138 -0.6 -4.5 conserved membrane protein of unknown function compare
PP_5025 -0.6 -4.3 Glucans biosynthesis glucosyltransferase H compare


Specific Phenotypes

For 2 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms