Experiment set19IT005 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27865 -4.6 -3.7 LysR family transcriptional regulator compare
PS417_21430 -4.2 -3.2 3-oxoacyl-ACP synthase compare
PS417_20985 -4.1 -2.8 porin compare
PS417_06375 -4.1 -1.2 deoxycytidine triphosphate deaminase compare
PS417_22450 -3.6 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_24745 -3.5 -4.0 gamma-glutamyl phosphate reductase compare
PS417_06680 -3.2 -8.7 nuclease PIN compare
PS417_23810 -3.2 -10.9 acetolactate synthase 3 catalytic subunit compare
PS417_01855 -3.2 -3.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_18595 -3.1 -5.1 3-isopropylmalate dehydratase compare
PS417_20125 -2.9 -4.7 phosphoribosylglycinamide formyltransferase compare
PS417_01580 -2.7 -2.0 imidazole glycerol phosphate synthase compare
PS417_04415 -2.7 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25710 -2.7 -1.8 indole-3-glycerol-phosphate synthase compare
PS417_27870 -2.7 -4.3 ATP-dependent DNA helicase RecG compare
PS417_12855 -2.7 -6.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27795 -2.7 -1.1 orotate phosphoribosyltransferase compare
PS417_21575 -2.7 -7.3 chemotaxis protein compare
PS417_08135 -2.7 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18560 -2.6 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18600 -2.6 -3.4 isopropylmalate isomerase compare
PS417_02415 -2.5 -4.1 phosphoserine phosphatase compare
PS417_02005 -2.5 -9.8 glutamate synthase compare
PS417_18530 -2.5 -7.7 O-succinylhomoserine sulfhydrylase compare
PS417_01575 -2.5 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23995 -2.5 -1.0 preprotein translocase subunit SecG compare
PS417_01850 -2.5 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23545 -2.5 -1.6 gamma-glutamyl kinase compare
PS417_06245 -2.5 -2.0 zinc metallopeptidase RseP compare
PS417_27800 -2.4 -2.9 exodeoxyribonuclease III compare
PS417_23770 -2.4 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_01915 -2.3 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00755 -2.3 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_22565 -2.3 -1.2 formyltetrahydrofolate deformylase compare
PS417_16465 -2.3 -9.4 sirohydrochlorin ferrochelatase compare
PS417_27835 -2.2 -5.7 endoribonuclease compare
PS417_28070 -2.2 -6.7 phosphate ABC transporter ATP-binding protein compare
PS417_04375 -2.2 -2.9 ABC transporter ATP-binding protein compare
PS417_19690 -2.2 -9.1 histidine kinase compare
PS417_25720 -2.1 -4.4 anthranilate synthase component II compare
PS417_26740 -2.1 -7.2 homoserine acetyltransferase compare
PS417_01565 -2.1 -4.5 imidazole glycerol phosphate synthase compare
PS417_04420 -2.1 -9.4 histidinol dehydrogenase compare
PS417_25725 -2.1 -12.4 anthranilate synthase component I compare
PS417_23805 -2.1 -5.3 acetolactate synthase 3 regulatory subunit compare
PS417_22060 -2.0 -1.6 hypothetical protein compare
PS417_02000 -2.0 -6.6 glutamate synthase compare
PS417_27245 -2.0 -4.9 aminotransferase DegT compare
PS417_00185 -2.0 -3.2 tryptophan synthase subunit beta compare
PS417_06200 -2.0 -7.2 protein-PII uridylyltransferase compare
PS417_25715 -2.0 -3.6 anthranilate phosphoribosyltransferase compare
PS417_02555 -2.0 -10.2 exoribonuclease R compare
PS417_27040 -1.9 -2.7 3-phosphoglycerate dehydrogenase compare
PS417_26745 -1.9 -4.5 methionine biosynthesis protein MetW compare
PS417_20785 -1.9 -2.6 transcriptional regulator compare
PS417_21125 -1.9 -5.5 phosphoadenosine phosphosulfate reductase compare
PS417_18310 -1.9 -1.9 hypothetical protein compare
PS417_12310 -1.9 -8.2 methionine synthase compare
PS417_20705 -1.9 -3.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_28230 -1.9 -3.8 transcriptional regulator compare
PS417_16555 -1.9 -1.8 cupin compare
PS417_23800 -1.8 -7.3 ketol-acid reductoisomerase compare
PS417_20160 -1.8 -4.2 cysteine synthase compare
PS417_22445 -1.7 -3.6 ATP-dependent DNA helicase RuvB compare
PS417_26890 -1.7 -6.0 dihydroxy-acid dehydratase compare
PS417_24500 -1.7 -3.2 DEAD/DEAH box helicase compare
PS417_06370 -1.7 -1.7 cold-shock protein compare
PS417_26730 -1.7 -1.0 pyrroline-5-carboxylate reductase compare
PS417_16490 -1.7 -1.2 cell division protein FtsK compare
PS417_05635 -1.7 -8.1 membrane protein compare
PS417_00180 -1.6 -2.2 tryptophan synthase subunit alpha compare
PS417_02510 -1.6 -2.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01635 -1.6 -5.2 nitrogen regulation protein NR(I) compare
PS417_03560 -1.5 -1.1 GTP-binding protein compare
PS417_03165 -1.5 -3.9 hypothetical protein compare
PS417_24935 -1.5 -1.2 hypothetical protein compare
PS417_02740 -1.5 -1.4 LysR family transcriptional regulator compare
PS417_23025 -1.5 -5.0 murein transglycosylase compare
PS417_23380 -1.5 -3.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_23775 -1.5 -1.5 exodeoxyribonuclease V subunit beta compare
PS417_00355 -1.5 -2.2 metal ABC transporter permease compare
PS417_06845 -1.5 -1.3 lipoprotein compare
PS417_03260 -1.5 -1.5 5S ribosomal RNA compare
PS417_21035 -1.5 -7.6 multidrug transporter compare
PS417_08685 -1.5 -1.8 flagellar hook-length control protein FliK compare
PS417_00370 -1.4 -1.1 hypothetical protein compare
PS417_04475 -1.4 -3.1 hypothetical protein compare
PS417_02820 -1.4 -1.2 urea ABC transporter ATP-binding protein compare
PS417_08025 -1.4 -1.4 acetylornithine aminotransferase compare
PS417_24615 -1.4 -1.3 hypothetical protein compare
PS417_23110 -1.4 -6.0 2-isopropylmalate synthase compare
PS417_27315 -1.4 -1.4 hypothetical protein compare
PS417_21390 -1.4 -5.9 hypothetical protein compare
PS417_13205 -1.4 -2.3 isochorismate-pyruvate lyase compare
PS417_07565 -1.4 -2.3 hypothetical protein compare
PS417_22690 -1.4 -2.3 phosphogluconate dehydratase compare
PS417_18105 -1.4 -1.4 iron-dicitrate transporter substrate-binding subunit compare
PS417_26995 -1.4 -4.7 phosphoserine phosphatase compare
PS417_28080 -1.4 -7.7 phosphate ABC transporter permease compare
PS417_22620 -1.4 -3.9 pyruvate kinase compare
PS417_10025 -1.4 -1.3 bacteriophage lambda NinG family protein compare
PS417_06335 -1.3 -2.1 S-formylglutathione hydrolase compare
PS417_02485 -1.3 -3.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_16520 -1.3 -1.4 cold-shock protein compare
PS417_18585 -1.3 -2.8 3-isopropylmalate dehydrogenase compare
PS417_17160 -1.3 -2.2 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_14515 -1.3 -1.7 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_19665 -1.3 -2.8 flagellar motor protein MotD compare
PS417_12290 -1.3 -5.3 sulfite reductase compare
PS417_06735 -1.3 -1.6 3-oxoadipate enol-lactonase compare
PS417_08540 -1.3 -2.2 RNA helicase compare
PS417_26985 -1.3 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08130 -1.3 -2.0 aspartate aminotransferase compare
PS417_03380 -1.2 -1.2 hypothetical protein compare
PS417_27875 -1.2 -6.1 histidine kinase compare
PS417_04585 -1.2 -1.7 hypothetical protein compare
PS417_22895 -1.2 -5.7 tyrosine recombinase XerD compare
PS417_26805 -1.2 -0.9 cell division protein FtsE compare
PS417_04365 -1.2 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_16510 -1.2 -2.6 Clp protease ClpX compare
PS417_19350 -1.2 -3.1 GTP cyclohydrolase compare
PS417_20715 -1.2 -2.1 cytochrome Cbb3 compare
PS417_26370 -1.2 -2.9 RNA helicase compare
PS417_26990 -1.2 -0.8 RNA pyrophosphohydrolase compare
PS417_06165 -1.2 -2.8 thiamine biosynthesis protein ThiF compare
PS417_01630 -1.2 -1.6 hypothetical protein compare
PS417_07560 -1.2 -0.9 universal stress protein UspA compare
PS417_02160 -1.2 -1.2 hypothetical protein compare
PS417_06600 -1.2 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_05815 -1.1 -2.6 recombinase RecA compare
PS417_15105 -1.1 -4.8 membrane protein compare
PS417_19190 -1.1 -2.6 BolA family transcriptional regulator compare
PS417_07710 -1.1 -4.2 membrane protein compare
PS417_20855 -1.1 -1.0 hypothetical protein compare
PS417_23900 -1.1 -5.0 poly(A) polymerase compare
PS417_22795 -1.1 -1.6 exclusion suppressor FxsA compare
PS417_00065 -1.1 -1.0 3-methyladenine DNA glycosylase compare
PS417_28145 -1.1 -2.3 AraC family transcriptional regulator compare
PS417_27425 -1.1 -4.3 exopolyphosphatase compare
PS417_01955 -1.1 -4.9 peptidase compare
PS417_08125 -1.1 -0.4 prephenate dehydratase compare
PS417_28280 -1.1 -2.4 hypothetical protein compare
PS417_10245 -1.1 -1.4 hypothetical protein compare
PS417_27300 -1.1 -0.7 cell division protein ZapA compare
PS417_15780 -1.1 -2.9 membrane protein compare
PS417_23210 -1.1 -1.6 serine acetyltransferase compare
PS417_02895 -1.1 -1.0 precorrin-6Y C5,15-methyltransferase compare
PS417_07770 -1.1 -1.5 hypothetical protein compare
PS417_01095 -1.1 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_18885 -1.0 -2.1 GntR family transcriptional regulator compare
PS417_08245 -1.0 -0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_05575 -1.0 -4.1 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_21630 -1.0 -1.3 magnesium transporter compare
PS417_04385 -1.0 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_22935 -1.0 -2.2 hypothetical protein compare
PS417_24585 -1.0 -4.8 AMP nucleosidase compare
PS417_27305 -1.0 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_15110 -1.0 -3.1 protein BatD compare
PS417_15090 -1.0 -1.5 hypothetical protein compare
PS417_28020 -1.0 -2.1 chorismate--pyruvate lyase compare
PS417_06945 -1.0 -0.9 membrane protein compare
PS417_01750 -1.0 -1.5 histidine ammonia-lyase compare
PS417_00705 -1.0 -1.0 MarR family transcriptional regulator compare
PS417_20700 -1.0 -5.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_22520 -1.0 -1.3 histidine kinase compare
PS417_19860 -1.0 -6.8 flagellar hook protein FlgL compare
PS417_15085 -1.0 -3.2 ATPase AAA compare
PS417_22260 -0.9 -2.3 segregation and condensation protein B compare
PS417_20755 -0.9 -2.4 membrane protein compare
PS417_05010 -0.9 -1.2 IclR family transcriptional regulator compare
PS417_16715 -0.9 -0.7 DoxX family protein compare
PS417_11345 -0.9 -2.4 membrane protein compare
PS417_22855 -0.9 -2.0 ssDNA exonuclease RecJ compare
PS417_23080 -0.9 -2.1 sugar ABC transporter ATPase compare
PS417_26510 -0.9 -3.5 5,10-methylenetetrahydrofolate reductase compare
PS417_22210 -0.9 -1.2 AraC family transcriptional regulator compare
PS417_07170 -0.9 -2.3 hypothetical protein compare
PS417_10810 -0.9 -1.4 hypothetical protein compare
PS417_21690 -0.9 -3.7 N-succinylarginine dihydrolase compare
PS417_25730 -0.9 -2.8 phosphoglycolate phosphatase compare
PS417_00995 -0.9 -1.2 alpha/beta hydrolase compare
PS417_22570 -0.9 -0.7 H-NS histone compare
PS417_15225 -0.9 -2.0 alpha/beta hydrolase compare
PS417_09010 -0.9 -1.7 phosphohistidine phosphatase compare
PS417_19650 -0.9 -2.2 chemotaxis protein CheW compare
PS417_19195 -0.9 -2.0 hypothetical protein compare
PS417_26230 -0.9 -2.9 electron transfer flavoprotein subunit alpha compare
PS417_17645 -0.9 -1.1 RND transporter compare
PS417_01405 -0.9 -2.1 sugar transporter compare
PS417_19865 -0.9 -5.6 flagellar hook protein FlgK compare
PS417_02280 -0.9 -0.9 GlcNAc-PI de-N-acetylase compare
PS417_01640 -0.9 -3.5 histidine kinase compare
PS417_28085 -0.9 -4.7 phosphate-binding protein compare
PS417_04595 -0.9 -1.6 cell division protein MraZ compare
PS417_18025 -0.9 -2.0 cytochrome C compare
PS417_24705 -0.9 -1.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_17925 -0.9 -1.7 acyl-CoA dehydrogenase compare
PS417_08335 -0.8 -1.2 hypothetical protein compare
PS417_10985 -0.8 -0.8 NADH:flavin oxidoreductase compare
PS417_14925 -0.8 -1.5 2-methylcitrate dehydratase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments