Experiment set19IT005 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_10

200 most important genes:

  gene name fitness t score description  
PP_0082 -5.6 -7.7 tryptophan synthase alpha chain compare
PP_5014 -5.4 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -5.4 -8.2 tryptophan synthase beta chain compare
PP_4696 -5.2 -3.6 Nitrogen regulation protein NR(I) compare
PP_1986 -5.0 -4.9 3-isopropylmalate dehydratase small subunit compare
PP_5098 -4.9 -10.1 methionine biosynthesis protein MetW compare
PP_1985 -4.9 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_1988 -4.7 -10.5 3-isopropylmalate dehydrogenase compare
PP_0967 -4.6 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2168 -4.6 -13.7 Transaldolase compare
PP_2370 -4.5 -5.3 conserved protein of unknown function compare
PP_0289 -4.3 -8.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5097 -4.3 -13.5 homoserine O-acetyltransferase compare
PP_2402 -4.3 -2.9 putative Sensor histidine kinase compare
PP_0293 -4.3 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5128 -4.2 -10.9 Dihydroxy-acid dehydratase compare
PP_3999 -4.2 -8.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4678 -4.2 -14.0 Ketol-acid reductoisomerase compare
PP_0292 -4.1 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0965 -4.0 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5015 -4.0 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0422 -3.9 -6.4 Indole-3-glycerol phosphate synthase compare
PP_0421 -3.8 -9.5 Anthranilate phosphoribosyltransferase compare
PP_1995 -3.8 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2371 -3.7 -8.0 Sulphite reductase hemoprotein, beta subunit compare
PP_5185 -3.7 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0966 -3.6 -8.8 Histidinol dehydrogenase compare
PP_4680 -3.6 -14.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -3.6 -16.4 Anthranilate synthase component 1 compare
PP_2001 -3.5 -9.3 O-succinylhomoserine sulfhydrylase compare
PP_3511 -3.5 -9.1 Branched-chain-amino-acid aminotransferase compare
PP_4679 -3.5 -7.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -3.4 -6.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -3.4 -11.1 Argininosuccinate synthase compare
PP_0184 -3.3 -6.8 Argininosuccinate lyase compare
PP_5347 -3.1 -9.9 pyruvate carboxylase subunit A compare
PP_4890 -3.1 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -3.0 -3.5 Acetylglutamate kinase compare
PP_1079 -2.9 -6.6 Ornithine carbamoyltransferase compare
PP_2378 -2.8 -4.1 Fe/S biogenesis protein NfuA compare
PP_1898 -2.8 -4.7 MotA/TolQ/ExbB proton channel family protein compare
PP_4909 -2.6 -7.0 phosphoserine phosphatase compare
PP_5346 -2.6 -7.8 pyruvate carboxylase subunit B compare
PP_4874 -2.5 -2.3 50S ribosomal protein L9 compare
PP_4785 -2.5 -8.9 conserved exported protein of unknown function compare
PP_4700 -2.5 -2.9 pantothenate synthetase compare
PP_4880 -2.5 -11.4 exoribonuclease R compare
PP_1654 -2.4 -4.2 cysteine synthase B compare
PP_1025 -2.4 -8.3 2-isopropylmalate synthase compare
PP_1734 -2.4 -6.1 Probable septum site-determining protein MinC compare
PP_2328 -2.4 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_0758 -2.3 -4.2 conserved protein of unknown function compare
PP_4058 -2.3 -10.7 1,4-alpha-glucan branching enzyme compare
PP_1022 -2.3 -5.3 glucose 6-phosphate-1-dehydrogenase compare
PP_2327 -2.3 -5.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5155 -2.2 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0787 -2.2 -4.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5348 -2.1 -7.3 Transcriptional regulator, LysR family compare
PP_1231 -2.1 -5.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4994 -2.1 -6.1 conserved protein of unknown function compare
PP_5095 -2.0 -1.9 pyrroline-5-carboxylate reductase compare
PP_1428 -2.0 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_3417 -1.9 -7.6 D-gluconate transporter compare
PP_5303 -1.8 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5104 -1.7 -6.8 thiazole synthase compare
PP_0593 -1.7 -1.5 putative ribosome-binding factor compare
PP_0420 -1.7 -5.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4804 -1.7 -4.2 RlpA-like lipoprotein compare
PP_1656 -1.7 -5.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_4902 -1.6 -2.2 Oligoribonuclease compare
PP_1216 -1.6 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4964 -1.6 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4532 -1.6 -1.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1011 -1.5 -6.1 glucokinase compare
PP_4699 -1.5 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2581 -1.5 -2.1 conserved protein of unknown function compare
PP_1233 -1.4 -2.9 sulfurtransferase compare
PP_0393 -1.4 -2.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0833 -1.4 -1.3 queuine tRNA-ribosyltransferase compare
PP_4693 -1.4 -3.5 RNA polymerase-binding transcription factor DksA compare
PP_1655 -1.4 -2.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0914 -1.4 -6.8 GGDEF domain protein compare
PP_1733 -1.4 -3.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_1198 -1.3 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4593 -1.3 -2.1 conserved protein of unknown function compare
PP_5217 -1.3 -7.5 Polyphosphate kinase compare
PP_3603 -1.3 -5.3 Transcriptional regulator, GntR family compare
PP_0291 -1.2 -1.6 conserved protein of unknown function compare
PP_3946 -1.2 -1.9 HTH-type transcriptional repressor NicR compare
PP_4642 -1.2 -1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_5507 -1.2 -2.9 protein of unknown function compare
PP_0339 -1.2 -0.8 Pyruvate dehydrogenase E1 component compare
PP_4782 -1.2 -4.7 Phosphomethylpyrimidine kinase compare
PP_0547 -1.2 -6.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0364 -1.1 -6.5 pimeloyl-[acp] methyl ester esterase compare
PP_5090 -1.1 -3.2 putative cell division protein compare
PP_0366 -1.1 -4.0 dethiobiotin synthetase compare
PP_5400 -1.1 -6.1 conserved protein of unknown function compare
PP_5114 -1.1 -2.0 putative adenine methyltransferase compare
PP_5227 -1.1 -5.7 diaminopimelate decarboxylase compare
PP_t49 -1.1 -2.6 tRNA-Met compare
PP_3519 -1.1 -1.2 putative Lipoprotein compare
PP_4984 -1.1 -6.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0362 -1.1 -6.4 Biotin synthase compare
PP_1664 -1.1 -2.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_1912 -1.1 -3.1 Phosphate acyltransferase compare
PP_1552 -1.1 -2.7 putative Phage replication protein compare
PP_4340 -1.1 -4.2 response regulator for chemotactic signal transduction compare
PP_0365 -1.1 -6.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4724 -1.1 -0.7 Carbamoyl-phosphate synthase small chain compare
PP_1528 -1.0 -1.6 conserved protein of unknown function compare
PP_4695 -1.0 -6.0 Sensory box histidine kinase compare
PP_1906 -1.0 -2.2 ribosomal large subunit pseudouridine synthase C compare
PP_0735 -1.0 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_4479 -1.0 -3.2 arginine N-succinyltransferase, subunit beta compare
PP_1012 -1.0 -5.1 DNA-binding response regulator compare
PP_1186 -1.0 -1.2 two component system DNA-binding transcriptional dual regulator compare
PP_2999 -1.0 -1.4 Glyoxalase family protein compare
PP_0566 -0.9 -1.2 translation-related factor compare
PP_0065 -0.9 -1.7 NAD-binding component of TrK potassium transporter compare
PP_0363 -0.9 -5.7 8-amino-7-oxononanoate synthase compare
PP_1353 -0.9 -1.9 conserved membrane protein of unknown function compare
PP_1304 -0.9 -5.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0874 -0.9 -1.2 conserved protein of unknown function compare
PP_1099 -0.9 -2.2 Cold shock protein CapB compare
PP_4546 -0.9 -2.5 ATP-dependent helicase HrpA compare
PP_3392 -0.9 -1.6 conserved protein of unknown function compare
PP_1362 -0.9 -2.6 pyruvate kinase II compare
PP_4697 -0.9 -1.7 poly(A) polymerase compare
PP_5310 -0.9 -2.8 junction-specific ATP-dependent DNA helicase compare
PP_0960 -0.9 -4.0 phospholipid ABC transporter binding protein compare
PP_4126 -0.9 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_4122 -0.9 -0.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5053 -0.9 -4.9 Protein-export protein SecB compare
PP_1017 -0.9 -3.3 mannose/glucose ABC transporter, permease protein compare
PP_1016 -0.9 -4.6 mannose/glucose ABC transporter, permease protein compare
PP_2388 -0.9 -1.6 Transporter, LysE family compare
PP_4009 -0.8 -3.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_2390 -0.8 -3.3 Transcriptional regulator, LysR family compare
PP_0232 -0.8 -1.2 ATP-binding taurine transporter subunit compare
PP_4099 -0.8 -8.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5644 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_2214 -0.8 -2.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0872 -0.8 -3.3 Peptide chain release factor 3 compare
PP_4832 -0.8 -3.2 Precorrin-6x reductase compare
PP_1774 -0.8 -1.6 conserved exported protein of unknown function compare
PP_5058 -0.8 -3.6 Carboxy-terminal-processing protease compare
PP_3064 -0.8 -2.4 Phage tail protein compare
PP_5328 -0.8 -1.7 putative phosphate transport system permease protein compare
PP_3376 -0.8 -3.0 putative phosphonate dehydrogenase compare
PP_5705 -0.8 -1.8 protein of unknown function compare
PP_5350 -0.8 -2.4 Transcriptional regulator, RpiR family compare
PP_1164 -0.8 -1.6 Transcriptional regulator, LysR family compare
PP_5514 -0.8 -1.4 conserved protein of unknown function compare
PP_5331 -0.8 -2.2 Long-chain acyl-CoA thioester hydrolase compare
PP_4004 -0.8 -2.8 DNA translocase FtsK compare
PP_2105 -0.8 -2.3 conserved protein of unknown function compare
PP_2511 -0.8 -2.2 conserved protein of unknown function compare
PP_1015 -0.8 -3.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_4424 -0.8 -1.8 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2441 -0.8 -1.2 conserved protein of unknown function compare
PP_1650 -0.7 -6.6 Sensor protein GacS compare
PP_2908 -0.7 -2.9 DNA-binding transcriptional repressor compare
PP_0138 -0.7 -4.8 conserved membrane protein of unknown function compare
PP_5639 -0.7 -3.9 conserved exported protein of unknown function compare
PP_0377 -0.7 -0.7 coenzyme PQQ synthesis protein D compare
PP_1268 -0.7 -1.3 putative HtrA suppressor protein sohA compare
PP_1224 -0.7 -3.3 periplasmic subunit of the TolQRA transport system compare
PP_4922 -0.7 -4.2 Phosphomethylpyrimidine synthase compare
PP_0378 -0.7 -3.6 Pyrroloquinoline-quinone synthase compare
PP_2547 -0.7 -1.6 Transcriptional regulator, LysR family compare
PP_5487 -0.7 -2.4 conserved protein of unknown function compare
PP_4870 -0.7 -2.0 Azurin compare
PP_1493 -0.7 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1018 -0.7 -4.2 mannose/glucose ABC transporter - ATP binding subunit compare
PP_1672 -0.7 -2.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0151 -0.7 -2.4 conserved exported protein of unknown function compare
PP_1303 -0.7 -2.9 Sulfate adenylyltransferase subunit 2 compare
PP_4098 -0.7 -1.1 UvrABC system protein C compare
PP_t12 -0.7 -0.8 tRNA-Thr compare
PP_2514 -0.7 -1.9 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_1757 -0.7 -2.3 DNA-binding transcriptional dual regulator compare
PP_0122 -0.7 -1.3 conserved exported protein of unknown function compare
PP_2341 -0.7 -1.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5035 -0.7 -2.9 Histidine utilization repressor compare
PP_2081 -0.7 -2.9 putative phosphoenolpyruvate synthase regulatory protein compare
PP_1872 -0.7 -3.5 glutamate-pyruvate aminotransferase compare
PP_2137 -0.7 -2.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_2899 -0.7 -0.8 conserved exported protein of unknown function compare
PP_4944 -0.7 -2.3 Carbamoyltransferase compare
PP_2000 -0.7 -0.7 amidophosphoribosyl transferase compare
PP_1770 -0.7 -0.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1589 -0.7 -3.6 uridylyltransferase compare
PP_1444 -0.7 -4.5 quinoprotein glucose dehydrogenase compare
PP_4766 -0.6 -4.3 ATP-dependent RNA helicase compare
PP_3508 -0.6 -1.7 Protein CobW compare
PP_3634 -0.6 -2.5 putative acetyltransferase, GNAT family compare
PP_0425 -0.6 -1.6 conserved protein of unknown function compare
PP_3043 -0.6 -1.6 conserved protein of unknown function compare
PP_1778 -0.6 -3.4 Lipopolysaccharide ABC export system, permease protein compare


Specific Phenotypes

For 1 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms