Experiment set19IT004 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_21570 -11.4 -5.0 flagellar basal body rod protein FlgB compare
PS417_19740 -10.7 -4.3 flagellar biosynthesis protein flip compare
PS417_19765 -9.7 -9.1 flagellar hook-length control protein compare
PS417_19730 -9.5 -3.7 flagellar biosynthesis protein FliR compare
PS417_21565 -9.5 -4.7 flagellar basal body rod protein FlgC compare
PS417_21595 -9.2 -3.9 flagellar biosynthesis protein FlgN compare
PS417_19725 -9.0 -5.1 flagellar biosynthesis protein FlhB compare
PS417_02510 -8.9 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_21585 -8.7 -12.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19695 -8.6 -8.5 flagellar biosynthesis sigma factor compare
PS417_18595 -8.6 -3.8 3-isopropylmalate dehydratase compare
PS417_19745 -8.4 -6.2 flagellar assembly protein FliO compare
PS417_18600 -8.4 -3.2 isopropylmalate isomerase compare
PS417_19785 -8.4 -3.4 flagellar biogenesis protein compare
PS417_01635 -8.4 -6.0 nitrogen regulation protein NR(I) compare
PS417_21575 -8.3 -5.3 chemotaxis protein compare
PS417_19795 -8.2 -7.8 flagellar assembly protein FliH compare
PS417_04415 -8.1 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25720 -8.1 -7.9 anthranilate synthase component II compare
PS417_19710 -8.0 -15.1 flagellar biosynthesis protein FlhA compare
PS417_23805 -7.7 -4.4 acetolactate synthase 3 regulatory subunit compare
PS417_19825 -7.7 -10.1 ATPase AAA compare
PS417_28220 -7.6 -3.0 LysR family transcriptional regulator compare
PS417_18560 -7.6 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_19755 -7.4 -1.7 flagellar motor switch protein FliM compare
PS417_23800 -7.4 -5.1 ketol-acid reductoisomerase compare
PS417_19860 -7.3 -15.4 flagellar hook protein FlgL compare
PS417_04420 -7.3 -8.7 histidinol dehydrogenase compare
PS417_27710 -7.3 -4.9 AsnC family transcriptional regulator compare
PS417_19790 -7.3 -4.0 ATP synthase compare
PS417_19665 -7.2 -3.9 flagellar motor protein MotD compare
PS417_19840 -7.1 -11.9 flagellar cap protein FliD compare
PS417_25725 -7.0 -12.6 anthranilate synthase component I compare
PS417_18530 -7.0 -6.2 O-succinylhomoserine sulfhydrylase compare
PS417_19705 -7.0 -3.1 flagellar biosynthesis regulator FlhF compare
PS417_19880 -6.9 -6.5 flagellar basal body L-ring protein compare
PS417_01855 -6.9 -2.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_19620 -6.9 -2.7 hypothetical protein compare
PS417_23950 -6.9 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_21555 -6.8 -8.4 flagellar hook protein FlgE compare
PS417_19800 -6.8 -2.2 flagellar motor switch protein FliG compare
PS417_02005 -6.8 -10.3 glutamate synthase compare
PS417_18540 -6.7 -4.4 colicin V production CvpA compare
PS417_18690 -6.6 -3.5 aromatic amino acid aminotransferase compare
PS417_27040 -6.5 -2.4 3-phosphoglycerate dehydrogenase compare
PS417_18585 -6.5 -5.6 3-isopropylmalate dehydrogenase compare
PS417_01640 -6.5 -3.8 histidine kinase compare
PS417_00185 -6.4 -3.7 tryptophan synthase subunit beta compare
PS417_27705 -6.4 -1.4 amino acid dehydrogenase compare
PS417_26740 -6.3 -7.8 homoserine acetyltransferase compare
PS417_19645 -6.2 -2.2 chemotaxis protein compare
PS417_23810 -6.2 -12.2 acetolactate synthase 3 catalytic subunit compare
PS417_06200 -6.2 -6.0 protein-PII uridylyltransferase compare
PS417_01575 -6.1 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19675 -6.0 -6.0 chemotaxis protein CheY compare
PS417_23545 -5.9 -2.6 gamma-glutamyl kinase compare
PS417_19660 -5.9 -4.5 cobalamin biosynthesis protein CobQ compare
PS417_27835 -5.9 -6.5 endoribonuclease compare
PS417_05635 -5.9 -6.1 membrane protein compare
PS417_12855 -5.9 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20105 -5.8 -19.5 glycosyl transferase compare
PS417_01850 -5.8 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19885 -5.7 -2.5 flagellar basal body rod protein FlgG compare
PS417_19850 -5.7 -8.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_21510 -5.6 -2.5 histidine kinase compare
PS417_01955 -5.5 -9.1 peptidase compare
PS417_02000 -5.5 -12.8 glutamate synthase compare
PS417_19630 -5.5 -3.7 LuxR family transcriptional regulator compare
PS417_25715 -5.5 -5.3 anthranilate phosphoribosyltransferase compare
PS417_00045 -5.4 -1.7 glycerol acyltransferase compare
PS417_19805 -5.4 -3.9 flagellar M-ring protein FliF compare
PS417_19735 -5.3 -6.0 flagellar biosynthesis protein FliQ compare
PS417_26995 -5.2 -7.6 phosphoserine phosphatase compare
PS417_08155 -5.2 -2.0 integration host factor subunit beta compare
PS417_19865 -5.2 -6.6 flagellar hook protein FlgK compare
PS417_24705 -5.2 -3.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_12290 -5.1 -6.0 sulfite reductase compare
PS417_26745 -5.1 -6.0 methionine biosynthesis protein MetW compare
PS417_19650 -5.1 -4.3 chemotaxis protein CheW compare
PS417_27245 -5.0 -5.9 aminotransferase DegT compare
PS417_24745 -4.9 -2.3 gamma-glutamyl phosphate reductase compare
PS417_22565 -4.9 -1.1 formyltetrahydrofolate deformylase compare
PS417_19835 -4.8 -1.5 flagellar biosynthesis protein FliS compare
PS417_05975 -4.8 -1.1 chemotaxis protein CheW compare
PS417_08220 -4.6 -1.0 epimerase compare
PS417_19870 -4.5 -4.5 flagellar rod assembly protein FlgJ compare
PS417_27795 -4.5 -1.0 orotate phosphoribosyltransferase compare
PS417_20610 -4.5 -1.4 hypothetical protein compare
PS417_25710 -4.4 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_23995 -4.3 -1.0 preprotein translocase subunit SecG compare
PS417_26890 -4.3 -4.2 dihydroxy-acid dehydratase compare
PS417_14065 -4.3 -10.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22445 -4.2 -4.2 ATP-dependent DNA helicase RuvB compare
PS417_06375 -4.2 -0.9 deoxycytidine triphosphate deaminase compare
PS417_08230 -4.2 -2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_19830 -4.1 -2.6 flagellar assembly protein FliT compare
PS417_01915 -4.1 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_15095 -4.1 -3.2 hypothetical protein compare
PS417_00160 -4.1 -5.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_19655 -4.0 -2.7 chemotaxis protein CheW compare
PS417_03380 -4.0 -1.3 hypothetical protein compare
PS417_20985 -4.0 -2.2 porin compare
PS417_01580 -4.0 -1.2 imidazole glycerol phosphate synthase compare
PS417_21480 -4.0 -1.5 23S rRNA pseudouridylate synthase compare
PS417_08195 -4.0 -9.6 hypothetical protein compare
PS417_23110 -3.9 -6.0 2-isopropylmalate synthase compare
PS417_27865 -3.9 -3.9 LysR family transcriptional regulator compare
PS417_21390 -3.9 -2.8 hypothetical protein compare
PS417_27195 -3.8 -1.2 N-acetylglutamate synthase compare
PS417_19820 -3.8 -4.5 histidine kinase compare
PS417_11440 -3.8 -2.1 hypothetical protein compare
PS417_02415 -3.8 -5.5 phosphoserine phosphatase compare
PS417_21125 -3.7 -5.5 phosphoadenosine phosphosulfate reductase compare
PS417_04380 -3.7 -1.4 ABC transporter permease compare
PS417_02280 -3.7 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_27305 -3.7 -10.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_05575 -3.6 -6.7 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_12310 -3.5 -8.6 methionine synthase compare
PS417_01605 -3.5 -1.5 phosphoglycerate mutase compare
PS417_05595 -3.5 -4.8 ornithine carbamoyltransferase compare
PS417_02210 -3.5 -3.4 diguanylate cyclase compare
PS417_03260 -3.5 -1.0 5S ribosomal RNA compare
PS417_08245 -3.4 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_04915 -3.3 -1.8 glutamine ABC transporter ATP-binding protein compare
PS417_23580 -3.3 -1.5 peptidylprolyl isomerase compare
PS417_19615 -3.3 -6.5 chemotaxis protein CheW compare
PS417_19690 -3.3 -1.8 histidine kinase compare
PS417_23375 -3.2 -2.0 cytochrome C oxidase compare
PS417_26510 -3.2 -9.6 5,10-methylenetetrahydrofolate reductase compare
PS417_01565 -3.2 -1.5 imidazole glycerol phosphate synthase compare
PS417_09085 -3.2 -1.4 hypothetical protein compare
PS417_08190 -3.2 -10.1 membrane protein compare
PS417_20650 -3.0 -7.4 hypothetical protein compare
PS417_08205 -3.0 -3.4 acetyltransferase compare
PS417_08090 -3.0 -0.9 3-oxoacyl-ACP reductase compare
PS417_18310 -2.9 -1.4 hypothetical protein compare
PS417_08225 -2.9 -3.9 acetolactate synthase compare
PS417_16490 -2.9 -1.6 cell division protein FtsK compare
PS417_27435 -2.9 -5.1 polyphosphate kinase compare
PS417_23770 -2.9 -1.4 exodeoxyribonuclease V subunit alpha compare
PS417_08125 -2.9 -0.6 prephenate dehydratase compare
PS417_08200 -2.8 -3.0 hypothetical protein compare
PS417_20160 -2.8 -1.8 cysteine synthase compare
PS417_15085 -2.8 -4.0 ATPase AAA compare
PS417_08580 -2.8 -4.9 histidine kinase compare
PS417_27585 -2.8 -2.3 diaminopimelate epimerase compare
PS417_17215 -2.8 -3.1 peptidylprolyl isomerase compare
PS417_27870 -2.8 -3.9 ATP-dependent DNA helicase RecG compare
PS417_08135 -2.8 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25645 -2.8 -4.4 peptidase M23 compare
PS417_16990 -2.8 -3.7 acyl-CoA dehydrogenase compare
PS417_27010 -2.8 -7.6 threonine dehydratase compare
PS417_19625 -2.8 -4.5 histidine kinase compare
PS417_00960 -2.8 -2.3 transcriptional regulator compare
PS417_26730 -2.7 -0.9 pyrroline-5-carboxylate reductase compare
PS417_04650 -2.7 -0.8 D-alanine--D-alanine ligase compare
PS417_26985 -2.7 -4.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_24710 -2.7 -4.1 lipoprotein compare
PS417_20690 -2.7 -5.5 chemotaxis protein compare
PS417_03165 -2.7 -4.1 hypothetical protein compare
PS417_26990 -2.7 -0.8 RNA pyrophosphohydrolase compare
PS417_06645 -2.7 -10.5 RNA polymerase-associated protein RapA compare
PS417_18760 -2.7 -3.6 hypothetical protein compare
PS417_05815 -2.6 -4.3 recombinase RecA compare
PS417_03930 -2.6 -5.6 thymidine phosphorylase compare
PS417_15105 -2.6 -6.7 membrane protein compare
PS417_20775 -2.5 -4.1 coproporphyrinogen III oxidase compare
PS417_21705 -2.5 -4.4 arginine N-succinyltransferase compare
PS417_22620 -2.5 -4.5 pyruvate kinase compare
PS417_20095 -2.5 -6.2 hypothetical protein compare
PS417_00370 -2.5 -1.1 hypothetical protein compare
PS417_23025 -2.4 -4.5 murein transglycosylase compare
PS417_06530 -2.4 -2.1 membrane protein compare
PS417_24275 -2.4 -12.4 diguanylate phosphodiesterase compare
PS417_10720 -2.4 -2.8 chemotaxis protein CheY compare
PS417_06680 -2.3 -5.7 nuclease PIN compare
PS417_16370 -2.3 -6.2 chemotaxis protein CheY compare
PS417_05580 -2.3 -7.0 glycerol uptake facilitator GlpF compare
PS417_23900 -2.3 -7.9 poly(A) polymerase compare
PS417_08540 -2.3 -2.1 RNA helicase compare
PS417_08170 -2.3 -7.6 capsular biosynthesis protein compare
PS417_06500 -2.3 -1.4 hypothetical protein compare
PS417_17610 -2.3 -1.5 AsnC family transcriptional regulator compare
PS417_17565 -2.3 -2.5 branched-chain amino acid aminotransferase compare
PS417_08130 -2.3 -2.4 aspartate aminotransferase compare
PS417_03455 -2.2 -1.7 type III secretion protein compare
PS417_21990 -2.2 -1.2 LacI family transcriptional regulator compare
PS417_00180 -2.2 -2.0 tryptophan synthase subunit alpha compare
PS417_27940 -2.2 -1.7 type VI secretion protein compare
PS417_18590 -2.2 -2.7 SAM-dependent methyltransferase compare
PS417_04910 -2.1 -5.5 amino acid ABC transporter permease compare
PS417_22690 -2.1 -3.2 phosphogluconate dehydratase compare
PS417_21630 -2.1 -2.5 magnesium transporter compare
PS417_15495 -2.1 -1.0 FAD-dependent oxidoreductase compare
PS417_15820 -2.1 -1.2 universal stress protein UspA compare
PS417_27035 -2.0 -2.6 FAD-linked oxidase compare
PS417_24115 -2.0 -1.4 hypothetical protein compare
PS417_21320 -2.0 -3.6 transcriptional regulator compare
PS417_21560 -2.0 -2.3 flagellar basal body rod modification protein FlgD compare
PS417_16465 -2.0 -4.7 sirohydrochlorin ferrochelatase compare


Specific Phenotypes

For 6 genes in this experiment