Experiment set19IT003 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22565 -4.9 -1.6 formyltetrahydrofolate deformylase compare
PS417_08135 -4.2 -6.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27865 -3.4 -4.8 LysR family transcriptional regulator compare
PS417_20985 -3.3 -3.2 porin compare
PS417_18310 -3.1 -2.9 hypothetical protein compare
PS417_07640 -2.9 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23770 -2.9 -2.0 exodeoxyribonuclease V subunit alpha compare
PS417_08125 -2.9 -0.9 prephenate dehydratase compare
PS417_03260 -2.9 -1.8 5S ribosomal RNA compare
PS417_26730 -2.8 -1.3 pyrroline-5-carboxylate reductase compare
PS417_08685 -2.7 -2.8 flagellar hook-length control protein FliK compare
PS417_06680 -2.7 -7.7 nuclease PIN compare
PS417_04380 -2.6 -1.7 ABC transporter permease compare
PS417_01855 -2.6 -2.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_23805 -2.5 -5.2 acetolactate synthase 3 regulatory subunit compare
PS417_00180 -2.5 -2.7 tryptophan synthase subunit alpha compare
PS417_21480 -2.5 -1.9 23S rRNA pseudouridylate synthase compare
PS417_01915 -2.4 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21630 -2.4 -3.8 magnesium transporter compare
PS417_19690 -2.3 -7.6 histidine kinase compare
PS417_27800 -2.3 -3.5 exodeoxyribonuclease III compare
PS417_02415 -2.3 -3.9 phosphoserine phosphatase compare
PS417_05975 -2.3 -1.3 chemotaxis protein CheW compare
PS417_04375 -2.1 -2.7 ABC transporter ATP-binding protein compare
PS417_23810 -2.1 -10.4 acetolactate synthase 3 catalytic subunit compare
PS417_17215 -2.1 -3.5 peptidylprolyl isomerase compare
PS417_15085 -2.0 -4.8 ATPase AAA compare
PS417_21575 -2.0 -5.6 chemotaxis protein compare
PS417_19955 -2.0 -2.3 hypothetical protein compare
PS417_21510 -2.0 -2.1 histidine kinase compare
PS417_24745 -2.0 -4.0 gamma-glutamyl phosphate reductase compare
PS417_15095 -1.9 -3.1 hypothetical protein compare
PS417_23545 -1.9 -2.2 gamma-glutamyl kinase compare
PS417_26985 -1.9 -8.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02000 -1.9 -9.8 glutamate synthase compare
PS417_21430 -1.8 -2.2 3-oxoacyl-ACP synthase compare
PS417_27195 -1.8 -1.5 N-acetylglutamate synthase compare
PS417_08025 -1.8 -2.1 acetylornithine aminotransferase compare
PS417_00185 -1.8 -3.0 tryptophan synthase subunit beta compare
PS417_11400 -1.8 -2.1 phosphoglycerate mutase compare
PS417_16555 -1.8 -2.2 cupin compare
PS417_02555 -1.7 -10.6 exoribonuclease R compare
PS417_01580 -1.7 -1.9 imidazole glycerol phosphate synthase compare
PS417_23950 -1.6 -2.5 polynucleotide phosphorylase/polyadenylase compare
PS417_27040 -1.6 -2.8 3-phosphoglycerate dehydrogenase compare
PS417_02005 -1.6 -7.5 glutamate synthase compare
PS417_25710 -1.6 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_24500 -1.6 -4.4 DEAD/DEAH box helicase compare
PS417_01635 -1.6 -4.7 nitrogen regulation protein NR(I) compare
PS417_01560 -1.6 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_02280 -1.6 -1.8 GlcNAc-PI de-N-acetylase compare
PS417_01290 -1.5 -2.1 ADP-ribose diphosphatase compare
PS417_10245 -1.5 -1.9 hypothetical protein compare
PS417_18560 -1.5 -5.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02975 -1.5 -3.4 3-dehydroquinate dehydratase compare
PS417_08130 -1.5 -2.1 aspartate aminotransferase compare
PS417_19850 -1.5 -8.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_27245 -1.5 -2.6 aminotransferase DegT compare
PS417_19650 -1.5 -3.6 chemotaxis protein CheW compare
PS417_20705 -1.5 -3.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_27425 -1.4 -5.4 exopolyphosphatase compare
PS417_26770 -1.4 -1.3 tRNA (guanine-N7)-methyltransferase compare
PS417_17780 -1.4 -1.5 Ais protein compare
PS417_24585 -1.4 -7.4 AMP nucleosidase compare
PS417_15105 -1.4 -4.2 membrane protein compare
PS417_05815 -1.4 -3.3 recombinase RecA compare
PS417_12855 -1.4 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03560 -1.4 -1.9 GTP-binding protein compare
PS417_04385 -1.4 -3.5 organic solvent ABC transporter substrate-binding protein compare
PS417_07305 -1.4 -3.0 3-beta hydroxysteroid dehydrogenase compare
PS417_28070 -1.4 -6.6 phosphate ABC transporter ATP-binding protein compare
PS417_16490 -1.3 -1.7 cell division protein FtsK compare
PS417_07170 -1.3 -3.5 hypothetical protein compare
PS417_25720 -1.3 -5.3 anthranilate synthase component II compare
PS417_19350 -1.3 -4.2 GTP cyclohydrolase compare
PS417_12310 -1.3 -6.3 methionine synthase compare
PS417_00370 -1.3 -1.2 hypothetical protein compare
PS417_08230 -1.3 -1.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23995 -1.3 -0.9 preprotein translocase subunit SecG compare
PS417_01145 -1.3 -1.0 taurine transporter ATP-binding subunit compare
PS417_24155 -1.3 -1.7 ATP-binding protein compare
PS417_19860 -1.3 -9.3 flagellar hook protein FlgL compare
PS417_18370 -1.3 -1.7 hypothetical protein compare
PS417_19675 -1.3 -4.8 chemotaxis protein CheY compare
PS417_19660 -1.3 -5.8 cobalamin biosynthesis protein CobQ compare
PS417_26990 -1.2 -1.0 RNA pyrophosphohydrolase compare
PS417_02225 -1.2 -2.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_24705 -1.2 -2.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_22450 -1.2 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_15100 -1.2 -2.2 BatB protein compare
PS417_13425 -1.2 -2.1 cupin compare
PS417_08540 -1.2 -2.3 RNA helicase compare
PS417_16510 -1.2 -3.4 Clp protease ClpX compare
PS417_03000 -1.2 -2.3 translation initiation factor Sui1 compare
PS417_19785 -1.1 -5.1 flagellar biogenesis protein compare
PS417_19665 -1.1 -3.8 flagellar motor protein MotD compare
PS417_16005 -1.1 -2.1 ATPase compare
PS417_28080 -1.1 -7.1 phosphate ABC transporter permease compare
PS417_25725 -1.1 -7.0 anthranilate synthase component I compare
PS417_03300 -1.1 -2.4 alanine acetyltransferase compare
PS417_18585 -1.1 -3.4 3-isopropylmalate dehydrogenase compare
PS417_27795 -1.1 -0.8 orotate phosphoribosyltransferase compare
PS417_18595 -1.1 -3.4 3-isopropylmalate dehydratase compare
PS417_19735 -1.1 -2.8 flagellar biosynthesis protein FliQ compare
PS417_02560 -1.1 -1.6 23S rRNA methyltransferase compare
PS417_07710 -1.1 -3.7 membrane protein compare
PS417_04595 -1.1 -2.1 cell division protein MraZ compare
PS417_22690 -1.1 -3.1 phosphogluconate dehydratase compare
PS417_06205 -1.1 -5.1 methionine aminopeptidase compare
PS417_07770 -1.1 -1.7 hypothetical protein compare
PS417_01565 -1.1 -3.7 imidazole glycerol phosphate synthase compare
PS417_22895 -1.1 -4.1 tyrosine recombinase XerD compare
PS417_19805 -1.1 -3.5 flagellar M-ring protein FliF compare
PS417_19865 -1.1 -6.0 flagellar hook protein FlgK compare
PS417_19840 -1.0 -6.4 flagellar cap protein FliD compare
PS417_01605 -1.0 -1.2 phosphoglycerate mutase compare
PS417_04415 -1.0 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08155 -1.0 -1.3 integration host factor subunit beta compare
PS417_04420 -1.0 -6.6 histidinol dehydrogenase compare
PS417_19835 -1.0 -1.5 flagellar biosynthesis protein FliS compare
PS417_07420 -1.0 -1.9 restriction endonuclease compare
PS417_12805 -1.0 -5.4 glycogen branching protein compare
PS417_18600 -1.0 -2.7 isopropylmalate isomerase compare
PS417_01640 -1.0 -3.4 histidine kinase compare
PS417_27870 -1.0 -2.2 ATP-dependent DNA helicase RecG compare
PS417_20685 -1.0 -3.6 CAAX protease compare
PS417_09915 -1.0 -1.5 hypothetical protein compare
PS417_27875 -1.0 -5.4 histidine kinase compare
PS417_25715 -1.0 -2.2 anthranilate phosphoribosyltransferase compare
PS417_23800 -1.0 -5.8 ketol-acid reductoisomerase compare
PS417_02805 -1.0 -1.0 urease subunit gamma compare
PS417_09930 -1.0 -1.7 hypothetical protein compare
PS417_06200 -1.0 -4.9 protein-PII uridylyltransferase compare
PS417_21570 -1.0 -4.2 flagellar basal body rod protein FlgB compare
PS417_25390 -1.0 -4.1 MFS transporter compare
PS417_04365 -1.0 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_13510 -0.9 -0.9 polyketide cyclase compare
PS417_18530 -0.9 -3.7 O-succinylhomoserine sulfhydrylase compare
PS417_23025 -0.9 -2.9 murein transglycosylase compare
PS417_26370 -0.9 -2.3 RNA helicase compare
PS417_19655 -0.9 -1.9 chemotaxis protein CheW compare
PS417_19800 -0.9 -2.0 flagellar motor switch protein FliG compare
PS417_19795 -0.9 -5.7 flagellar assembly protein FliH compare
PS417_00975 -0.9 -1.3 hypothetical protein compare
PS417_17415 -0.9 -1.9 histidine kinase compare
PS417_18070 -0.9 -1.0 general secretion pathway protein GspH compare
PS417_15090 -0.9 -1.4 hypothetical protein compare
PS417_14080 -0.9 -3.0 hypothetical protein compare
PS417_21585 -0.9 -5.7 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19765 -0.9 -4.8 flagellar hook-length control protein compare
PS417_21555 -0.9 -5.4 flagellar hook protein FlgE compare
PS417_28220 -0.9 -1.0 LysR family transcriptional regulator compare
PS417_16465 -0.9 -4.6 sirohydrochlorin ferrochelatase compare
PS417_22060 -0.9 -0.9 hypothetical protein compare
PS417_25765 -0.9 -1.7 transcriptional regulator compare
PS417_19095 -0.8 -1.6 hypothetical protein compare
PS417_08590 -0.8 -1.5 hypothetical protein compare
PS417_02485 -0.8 -3.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_13735 -0.8 -1.4 hypothetical protein compare
PS417_19430 -0.8 -1.7 ureidoglycolate hydrolase compare
PS417_26120 -0.8 -0.9 hypothetical protein compare
PS417_02765 -0.8 -1.3 phosphate starvation-inducible protein PsiF compare
PS417_28075 -0.8 -3.2 phosphate ABC transporter permease compare
PS417_00045 -0.8 -1.6 glycerol acyltransferase compare
PS417_26740 -0.8 -3.7 homoserine acetyltransferase compare
PS417_23370 -0.8 -3.3 protoheme IX farnesyltransferase compare
PS417_15640 -0.8 -2.1 DNA methylase compare
PS417_05635 -0.8 -3.6 membrane protein compare
PS417_07615 -0.8 -3.0 TetR family transcriptional regulator compare
PS417_06375 -0.8 -0.6 deoxycytidine triphosphate deaminase compare
PS417_03080 -0.8 -0.8 hypothetical protein compare
PS417_02160 -0.8 -1.0 hypothetical protein compare
PS417_17755 -0.8 -1.9 hypothetical protein compare
PS417_16715 -0.8 -1.1 DoxX family protein compare
PS417_21565 -0.8 -1.5 flagellar basal body rod protein FlgC compare
PS417_21990 -0.8 -1.2 LacI family transcriptional regulator compare
PS417_22210 -0.8 -1.1 AraC family transcriptional regulator compare
PS417_21595 -0.8 -2.8 flagellar biosynthesis protein FlgN compare
PS417_19695 -0.8 -5.3 flagellar biosynthesis sigma factor compare
PS417_27135 -0.8 -0.7 glutamine synthetase compare
PS417_12565 -0.8 -1.5 2-dehydro-3-deoxygluconokinase compare
PS417_01575 -0.8 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19240 -0.8 -2.5 peptidase M42 compare
PS417_08620 -0.8 -0.8 hypothetical protein compare
PS417_15435 -0.8 -2.6 metallophosphatase compare
PS417_21320 -0.8 -1.6 transcriptional regulator compare
PS417_23820 -0.8 -3.1 hypothetical protein compare
PS417_10130 -0.8 -2.0 hypothetical protein compare
PS417_24620 -0.7 -1.0 hypothetical protein compare
PS417_23775 -0.7 -0.7 exodeoxyribonuclease V subunit beta compare
PS417_24370 -0.7 -0.7 (2Fe-2S)-binding protein compare
PS417_19740 -0.7 -4.3 flagellar biosynthesis protein flip compare
PS417_14555 -0.7 -1.9 AsnC family transcriptional regulator compare
PS417_28085 -0.7 -4.8 phosphate-binding protein compare
PS417_22375 -0.7 -0.6 cold-shock protein compare
PS417_26890 -0.7 -3.5 dihydroxy-acid dehydratase compare
PS417_23385 -0.7 -3.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_17945 -0.7 -0.7 hypothetical protein compare
PS417_27290 -0.7 -0.8 hypothetical protein compare
PS417_04390 -0.7 -1.4 toluene tolerance protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments