Experiment set19IT003 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_21

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.8 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1079 -6.2 -7.4 Ornithine carbamoyltransferase compare
PP_2371 -5.7 -6.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0082 -5.4 -7.4 tryptophan synthase alpha chain compare
PP_4696 -4.8 -4.7 Nitrogen regulation protein NR(I) compare
PP_0966 -4.8 -12.2 Histidinol dehydrogenase compare
PP_0967 -4.6 -11.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0083 -4.5 -9.1 tryptophan synthase beta chain compare
PP_1995 -4.4 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -4.4 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3511 -4.4 -8.5 Branched-chain-amino-acid aminotransferase compare
PP_2168 -4.0 -10.2 Transaldolase compare
PP_0289 -4.0 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1985 -3.9 -5.3 3-isopropylmalate dehydratase large subunit compare
PP_3999 -3.8 -9.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0422 -3.8 -5.8 Indole-3-glycerol phosphate synthase compare
PP_4678 -3.8 -14.1 Ketol-acid reductoisomerase compare
PP_5097 -3.7 -12.9 homoserine O-acetyltransferase compare
PP_2370 -3.6 -4.6 conserved protein of unknown function compare
PP_5098 -3.6 -7.7 methionine biosynthesis protein MetW compare
PP_5289 -3.5 -5.0 Acetylglutamate kinase compare
PP_0290 -3.4 -6.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -3.4 -13.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1025 -3.3 -12.1 2-isopropylmalate synthase compare
PP_5348 -3.3 -8.2 Transcriptional regulator, LysR family compare
PP_0292 -3.3 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -3.3 -7.5 3-isopropylmalate dehydrogenase compare
PP_0965 -3.3 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5346 -3.2 -8.2 pyruvate carboxylase subunit B compare
PP_2001 -3.1 -9.2 O-succinylhomoserine sulfhydrylase compare
PP_5128 -3.1 -7.1 Dihydroxy-acid dehydratase compare
PP_0184 -3.1 -7.1 Argininosuccinate lyase compare
PP_2327 -3.1 -6.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5185 -3.0 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5347 -3.0 -10.4 pyruvate carboxylase subunit A compare
PP_0417 -3.0 -14.4 Anthranilate synthase component 1 compare
PP_5014 -3.0 -4.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4890 -3.0 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4909 -2.9 -7.8 phosphoserine phosphatase compare
PP_0421 -2.9 -7.5 Anthranilate phosphoribosyltransferase compare
PP_1733 -2.8 -5.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_2328 -2.8 -6.8 Phosphoadenosine phosphosulfate reductase compare
PP_5303 -2.8 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4700 -2.7 -1.8 pantothenate synthetase compare
PP_1022 -2.6 -6.8 glucose 6-phosphate-1-dehydrogenase compare
PP_0735 -2.5 -2.7 molybdopterin-synthase adenylyltransferase compare
PP_1088 -2.5 -8.3 Argininosuccinate synthase compare
PP_0362 -2.5 -9.2 Biotin synthase compare
PP_0363 -2.4 -11.0 8-amino-7-oxononanoate synthase compare
PP_5155 -2.4 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0365 -2.4 -8.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1986 -2.4 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_4679 -2.4 -5.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4126 -2.3 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_1362 -2.2 -3.5 pyruvate kinase II compare
PP_1654 -2.2 -3.8 cysteine synthase B compare
PP_4804 -2.2 -4.3 RlpA-like lipoprotein compare
PP_0377 -2.1 -2.8 coenzyme PQQ synthesis protein D compare
PP_0364 -2.1 -8.7 pimeloyl-[acp] methyl ester esterase compare
PP_4984 -2.1 -8.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0420 -2.1 -8.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0366 -2.1 -6.9 dethiobiotin synthetase compare
PP_3946 -2.0 -1.8 HTH-type transcriptional repressor NicR compare
PP_4936 -2.0 -8.1 O-antigen polymerase compare
PP_5350 -2.0 -4.8 Transcriptional regulator, RpiR family compare
PP_3417 -2.0 -5.6 D-gluconate transporter compare
PP_0787 -1.9 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5095 -1.8 -1.7 pyrroline-5-carboxylate reductase compare
PP_1216 -1.8 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0914 -1.8 -6.9 GGDEF domain protein compare
PP_0393 -1.7 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4782 -1.6 -4.1 Phosphomethylpyrimidine kinase compare
PP_1231 -1.6 -5.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5104 -1.6 -6.8 thiazole synthase compare
PP_1293 -1.6 -2.4 molybdopterin synthase small subunit compare
PP_1353 -1.5 -2.8 conserved membrane protein of unknown function compare
PP_2378 -1.5 -2.3 Fe/S biogenesis protein NfuA compare
PP_0291 -1.5 -2.0 conserved protein of unknown function compare
PP_5217 -1.5 -6.7 Polyphosphate kinase compare
PP_4938 -1.5 -7.5 putative Glycosyl transferase compare
PP_4785 -1.5 -5.7 conserved exported protein of unknown function compare
PP_4122 -1.5 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4129 -1.4 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4693 -1.4 -4.0 RNA polymerase-binding transcription factor DksA compare
PP_1734 -1.4 -2.9 Probable septum site-determining protein MinC compare
PP_1128 -1.4 -3.8 OmpA family protein compare
PP_1237 -1.4 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2302 -1.4 -5.2 DNA-binding, ATP-dependent protease compare
PP_1898 -1.4 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_4368 -1.3 -4.0 flagellar motor switch protein compare
PP_1656 -1.3 -4.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_4058 -1.3 -6.7 1,4-alpha-glucan branching enzyme compare
PP_5507 -1.2 -2.4 protein of unknown function compare
PP_4196 -1.2 -3.2 conserved exported protein of unknown function compare
PP_3198 -1.2 -2.2 Ferredoxin, 2Fe-2S compare
PP_2681 -1.2 -2.1 coenzyme PQQ synthesis protein D compare
PP_5639 -1.2 -5.2 conserved exported protein of unknown function compare
PP_2388 -1.2 -2.9 Transporter, LysE family compare
PP_1664 -1.2 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_0274 -1.2 -1.9 putative transcriptional regulator containing HTH domain compare
PP_1011 -1.2 -5.6 glucokinase compare
PP_1304 -1.2 -6.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3164 -1.2 -3.7 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_4480 -1.2 -5.1 arginine N-succinyltransferase, subunit alpha compare
PP_1099 -1.2 -1.3 Cold shock protein CapB compare
PP_4370 -1.2 -2.9 Flagellar hook-basal body complex protein FliE compare
PP_4008 -1.1 -3.9 ATP-dependent serine protease compare
PP_2309 -1.1 -1.5 conserved protein of unknown function compare
PP_2720 -1.1 -1.5 conserved protein of unknown function compare
PP_4994 -1.1 -4.0 conserved protein of unknown function compare
PP_4964 -1.1 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_4902 -1.1 -1.7 Oligoribonuclease compare
PP_2136 -1.1 -4.7 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5028 -1.0 -2.7 proline iminopeptidase compare
PP_4977 -1.0 -5.8 5,10-methylenetetrahydrofolate reductase compare
PP_1348 -1.0 -4.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0547 -1.0 -3.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1017 -1.0 -4.4 mannose/glucose ABC transporter, permease protein compare
PP_0084 -1.0 -5.1 HTH-type transcriptional regulator TrpI compare
PP_5313 -1.0 -2.0 DNA-binding protein HU-alpha compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_5202 -1.0 -1.6 putative cell division protein compare
PP_3245 -1.0 -1.6 conserved protein of unknown function compare
PP_1655 -1.0 -1.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1009 -1.0 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4356 -1.0 -2.7 Flagellar protein FliO compare
PP_1912 -1.0 -2.9 Phosphate acyltransferase compare
PP_2402 -1.0 -1.7 putative Sensor histidine kinase compare
PP_4695 -1.0 -5.7 Sensory box histidine kinase compare
PP_1632 -0.9 -1.8 conserved protein of unknown function compare
PP_1441 -0.9 -2.6 tRNA (cmo5U34)-methyltransferase compare
PP_4396 -0.9 -3.1 conserved protein of unknown function compare
PP_3105 -0.9 -1.0 conserved membrane protein of unknown function compare
PP_2416 -0.9 -2.4 putative Iron ABC transporter, ATP-binding protein compare
PP_4369 -0.9 -3.7 Flagellar M-ring protein compare
PP_1589 -0.9 -4.7 uridylyltransferase compare
PP_4004 -0.9 -2.5 DNA translocase FtsK compare
PP_2820 -0.9 -1.8 HTH-type transcriptional regulator nfxB compare
PP_1303 -0.9 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_2088 -0.9 -1.8 RNA polymerase sigma factor SigX compare
PP_4642 -0.9 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_4355 -0.9 -1.4 flagellar export apparatus subunit compare
PP_4660 -0.9 -1.6 Transcriptional regulator, LysR family compare
PP_3649 -0.9 -2.0 Transcriptional regulator, GntR family compare
PP_5039 -0.9 -2.3 conserved protein of unknown function compare
PP_5329 -0.9 -1.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0164 -0.9 -2.8 conserved protein of unknown function compare
PP_2848 -0.9 -2.8 urease accessory protein compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_4910 -0.9 -2.2 conserved protein of unknown function compare
PP_3808 -0.9 -1.8 Antibiotic synthesis protein MbtH compare
PP_0566 -0.9 -1.1 translation-related factor compare
PP_4359 -0.8 -3.9 Flagellar protein FliL compare
PP_5495 -0.8 -1.5 protein of unknown function compare
PP_1217 -0.8 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4054 -0.8 -1.5 conserved protein of unknown function compare
PP_4828 -0.8 -1.1 Precorrin-8X methylmutase compare
PP_5227 -0.8 -3.8 diaminopimelate decarboxylase compare
PP_0872 -0.8 -3.1 Peptide chain release factor 3 compare
PP_5093 -0.8 -1.3 twitching motility protein compare
PP_4479 -0.8 -2.7 arginine N-succinyltransferase, subunit beta compare
PP_1233 -0.8 -1.9 sulfurtransferase compare
PP_4344 -0.8 -5.5 flagellar export pore protein compare
PP_4922 -0.8 -4.8 Phosphomethylpyrimidine synthase compare
PP_4829 -0.8 -2.1 putative precorrin-3B synthase compare
PP_2375 -0.8 -5.0 cobalamin-dependent methionine synthase compare
PP_1426 -0.8 -5.3 L-aspartate oxidase compare
PP_1390 -0.8 -1.7 conserved exported protein of unknown function compare
PP_1678 -0.8 -2.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2497 -0.8 -1.8 conserved protein of unknown function compare
PP_4699 -0.8 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1045 -0.8 -1.0 Type II secretion pathway protein XcpP compare
PP_5658 -0.8 -1.9 protein of unknown function compare
PP_4879 -0.7 -2.3 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4942 -0.7 -1.1 conserved protein of unknown function compare
PP_2390 -0.7 -3.4 Transcriptional regulator, LysR family compare
PP_3924 -0.7 -2.6 conserved protein of unknown function compare
PP_5027 -0.7 -1.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1872 -0.7 -4.0 glutamate-pyruvate aminotransferase compare
PP_2615 -0.7 -1.7 hemolysin-coregulated protein compare
PP_0406 -0.7 -1.5 Nucleotidyltransferase family protein compare
PP_0138 -0.7 -4.1 conserved membrane protein of unknown function compare
PP_4701 -0.7 -0.8 glucose-6-phosphate isomerase compare
PP_4242 -0.7 -3.9 conserved protein of unknown function with Rhs repeat-associated core domain compare
PP_1739 -0.7 -1.2 conserved membrane protein of unknown function compare
PP_4832 -0.7 -2.7 Precorrin-6x reductase compare
PP_1015 -0.7 -3.4 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5048 -0.7 -2.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4254 -0.7 -1.6 conserved protein of unknown function compare
PP_4826 -0.7 -3.2 Precorrin-3B C17-methyltransferase compare
PP_t12 -0.7 -0.8 tRNA-Thr compare
PP_1016 -0.7 -3.9 mannose/glucose ABC transporter, permease protein compare
PP_1444 -0.7 -4.6 quinoprotein glucose dehydrogenase compare
PP_4212 -0.7 -1.9 pyoverdine biosynthesis related protein compare
PP_3508 -0.7 -2.7 Protein CobW compare
PP_3481 -0.7 -1.2 conserved exported protein of unknown function compare
PP_1571 -0.7 -1.9 conserved protein of unknown function compare
PP_1756 -0.7 -2.9 conserved exported protein of unknown function compare
PP_5393 -0.7 -0.7 putative metal-binding chaperone compare
PP_2547 -0.7 -2.7 Transcriptional regulator, LysR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms