Experiment set19IT002 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_19795 -11.5 -7.4 flagellar assembly protein FliH compare
PS417_19740 -10.8 -4.0 flagellar biosynthesis protein flip compare
PS417_19765 -9.8 -8.4 flagellar hook-length control protein compare
PS417_01565 -9.7 -3.9 imidazole glycerol phosphate synthase compare
PS417_01575 -9.6 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19730 -9.6 -3.4 flagellar biosynthesis protein FliR compare
PS417_25720 -9.2 -5.2 anthranilate synthase component II compare
PS417_19725 -9.1 -4.7 flagellar biosynthesis protein FlhB compare
PS417_02510 -9.0 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18595 -8.7 -3.5 3-isopropylmalate dehydratase compare
PS417_05635 -8.7 -6.9 membrane protein compare
PS417_18600 -8.5 -3.0 isopropylmalate isomerase compare
PS417_19860 -8.3 -11.4 flagellar hook protein FlgL compare
PS417_19695 -8.3 -10.5 flagellar biosynthesis sigma factor compare
PS417_04415 -8.2 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_21565 -8.1 -4.2 flagellar basal body rod protein FlgC compare
PS417_18560 -8.0 -5.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27835 -8.0 -7.3 endoribonuclease compare
PS417_21570 -8.0 -4.6 flagellar basal body rod protein FlgB compare
PS417_21585 -7.8 -10.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_23805 -7.8 -4.1 acetolactate synthase 3 regulatory subunit compare
PS417_02005 -7.7 -7.5 glutamate synthase compare
PS417_28220 -7.7 -2.7 LysR family transcriptional regulator compare
PS417_19755 -7.5 -1.5 flagellar motor switch protein FliM compare
PS417_19790 -7.3 -3.6 ATP synthase compare
PS417_19665 -7.3 -3.6 flagellar motor protein MotD compare
PS417_26995 -7.3 -5.0 phosphoserine phosphatase compare
PS417_19710 -7.3 -17.0 flagellar biosynthesis protein FlhA compare
PS417_25725 -7.3 -13.1 anthranilate synthase component I compare
PS417_23800 -7.2 -8.6 ketol-acid reductoisomerase compare
PS417_19650 -7.2 -3.7 chemotaxis protein CheW compare
PS417_19880 -7.1 -9.0 flagellar basal body L-ring protein compare
PS417_19850 -7.1 -8.7 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_01855 -7.1 -2.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_19705 -7.1 -2.8 flagellar biosynthesis regulator FlhF compare
PS417_23950 -6.9 -2.4 polynucleotide phosphorylase/polyadenylase compare
PS417_01955 -6.8 -6.7 peptidase compare
PS417_19800 -6.8 -2.0 flagellar motor switch protein FliG compare
PS417_21595 -6.7 -4.7 flagellar biosynthesis protein FlgN compare
PS417_02000 -6.7 -4.6 glutamate synthase compare
PS417_18690 -6.7 -3.3 aromatic amino acid aminotransferase compare
PS417_26745 -6.7 -4.1 methionine biosynthesis protein MetW compare
PS417_19865 -6.7 -9.3 flagellar hook protein FlgK compare
PS417_01640 -6.6 -3.6 histidine kinase compare
PS417_01635 -6.6 -4.4 nitrogen regulation protein NR(I) compare
PS417_19840 -6.6 -11.8 flagellar cap protein FliD compare
PS417_23810 -6.6 -11.1 acetolactate synthase 3 catalytic subunit compare
PS417_27040 -6.6 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_19805 -6.6 -2.6 flagellar M-ring protein FliF compare
PS417_19630 -6.5 -2.9 LuxR family transcriptional regulator compare
PS417_19825 -6.5 -8.4 ATPase AAA compare
PS417_27705 -6.4 -1.3 amino acid dehydrogenase compare
PS417_26740 -6.4 -5.3 homoserine acetyltransferase compare
PS417_19660 -6.4 -4.9 cobalamin biosynthesis protein CobQ compare
PS417_19885 -6.4 -1.7 flagellar basal body rod protein FlgG compare
PS417_27710 -6.4 -6.6 AsnC family transcriptional regulator compare
PS417_19745 -6.3 -4.7 flagellar assembly protein FliO compare
PS417_06200 -6.2 -6.1 protein-PII uridylyltransferase compare
PS417_18540 -6.2 -4.1 colicin V production CvpA compare
PS417_18585 -6.0 -5.9 3-isopropylmalate dehydrogenase compare
PS417_21390 -6.0 -5.3 hypothetical protein compare
PS417_23545 -6.0 -2.4 gamma-glutamyl kinase compare
PS417_19655 -6.0 -3.5 chemotaxis protein CheW compare
PS417_01850 -5.9 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26890 -5.9 -7.1 dihydroxy-acid dehydratase compare
PS417_12855 -5.9 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21125 -5.9 -6.5 phosphoadenosine phosphosulfate reductase compare
PS417_21575 -5.6 -5.8 chemotaxis protein compare
PS417_19735 -5.5 -3.9 flagellar biosynthesis protein FliQ compare
PS417_19690 -5.4 -2.9 histidine kinase compare
PS417_08025 -5.3 -1.8 acetylornithine aminotransferase compare
PS417_05595 -5.2 -6.6 ornithine carbamoyltransferase compare
PS417_19870 -5.1 -4.7 flagellar rod assembly protein FlgJ compare
PS417_04420 -5.1 -7.8 histidinol dehydrogenase compare
PS417_20105 -5.0 -15.2 glycosyl transferase compare
PS417_24745 -5.0 -2.1 gamma-glutamyl phosphate reductase compare
PS417_02210 -5.0 -5.8 diguanylate cyclase compare
PS417_17215 -5.0 -3.5 peptidylprolyl isomerase compare
PS417_22565 -4.9 -1.0 formyltetrahydrofolate deformylase compare
PS417_19830 -4.9 -2.6 flagellar assembly protein FliT compare
PS417_21555 -4.9 -5.6 flagellar hook protein FlgE compare
PS417_08195 -4.8 -8.6 hypothetical protein compare
PS417_05975 -4.8 -1.0 chemotaxis protein CheW compare
PS417_05575 -4.7 -9.1 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_19785 -4.7 -1.9 flagellar biogenesis protein compare
PS417_24710 -4.6 -6.7 lipoprotein compare
PS417_19675 -4.6 -4.7 chemotaxis protein CheY compare
PS417_08220 -4.6 -0.9 epimerase compare
PS417_02415 -4.6 -5.8 phosphoserine phosphatase compare
PS417_19625 -4.6 -4.0 histidine kinase compare
PS417_27795 -4.5 -0.9 orotate phosphoribosyltransferase compare
PS417_00160 -4.5 -4.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_25710 -4.4 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_23995 -4.3 -0.9 preprotein translocase subunit SecG compare
PS417_23110 -4.3 -6.2 2-isopropylmalate synthase compare
PS417_09085 -4.3 -1.2 hypothetical protein compare
PS417_23580 -4.3 -1.2 peptidylprolyl isomerase compare
PS417_00755 -4.2 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_06375 -4.2 -0.8 deoxycytidine triphosphate deaminase compare
PS417_00185 -4.1 -4.1 tryptophan synthase subunit beta compare
PS417_27870 -4.1 -3.4 ATP-dependent DNA helicase RecG compare
PS417_20985 -4.1 -2.0 porin compare
PS417_01580 -4.1 -1.1 imidazole glycerol phosphate synthase compare
PS417_19645 -4.1 -1.7 chemotaxis protein compare
PS417_16990 -4.0 -7.0 acyl-CoA dehydrogenase compare
PS417_19835 -4.0 -1.6 flagellar biosynthesis protein FliS compare
PS417_23025 -3.9 -7.6 murein transglycosylase compare
PS417_27195 -3.8 -1.1 N-acetylglutamate synthase compare
PS417_18530 -3.8 -2.8 O-succinylhomoserine sulfhydrylase compare
PS417_14065 -3.7 -8.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_04585 -3.7 -1.8 hypothetical protein compare
PS417_20610 -3.7 -1.5 hypothetical protein compare
PS417_22450 -3.7 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_00385 -3.7 -1.1 Fur family transcriptional regulator compare
PS417_01605 -3.7 -1.5 phosphoglycerate mutase compare
PS417_08230 -3.6 -1.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_12290 -3.6 -6.0 sulfite reductase compare
PS417_16490 -3.6 -1.4 cell division protein FtsK compare
PS417_03260 -3.5 -0.9 5S ribosomal RNA compare
PS417_01990 -3.5 -6.2 cell division protein compare
PS417_19615 -3.5 -6.3 chemotaxis protein CheW compare
PS417_26605 -3.5 -1.0 malonate decarboxylase subunit beta compare
PS417_12310 -3.5 -7.8 methionine synthase compare
PS417_08135 -3.4 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08225 -3.4 -3.6 acetolactate synthase compare
PS417_00045 -3.4 -1.8 glycerol acyltransferase compare
PS417_27435 -3.3 -7.5 polyphosphate kinase compare
PS417_27865 -3.3 -2.7 LysR family transcriptional regulator compare
PS417_26695 -3.2 -0.9 uracil phosphoribosyltransferase compare
PS417_01560 -3.1 -2.6 imidazoleglycerol-phosphate dehydratase compare
PS417_21655 -3.1 -0.8 aspartate kinase compare
PS417_08190 -3.1 -11.0 membrane protein compare
PS417_20160 -3.1 -2.4 cysteine synthase compare
PS417_04915 -3.1 -1.4 glutamine ABC transporter ATP-binding protein compare
PS417_07170 -3.1 -3.8 hypothetical protein compare
PS417_18570 -3.0 -3.2 peptidoglycan-binding protein compare
PS417_19620 -3.0 -1.9 hypothetical protein compare
PS417_08540 -3.0 -2.1 RNA helicase compare
PS417_15105 -3.0 -8.1 membrane protein compare
PS417_22620 -3.0 -5.5 pyruvate kinase compare
PS417_21630 -3.0 -2.3 magnesium transporter compare
PS417_08170 -3.0 -9.6 capsular biosynthesis protein compare
PS417_26510 -3.0 -7.6 5,10-methylenetetrahydrofolate reductase compare
PS417_07575 -3.0 -4.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_20650 -2.9 -7.7 hypothetical protein compare
PS417_21320 -2.9 -4.6 transcriptional regulator compare
PS417_08125 -2.9 -0.6 prephenate dehydratase compare
PS417_23770 -2.9 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_20095 -2.9 -7.6 hypothetical protein compare
PS417_19820 -2.8 -2.6 histidine kinase compare
PS417_20585 -2.8 -6.1 chemotaxis protein compare
PS417_15110 -2.8 -7.5 protein BatD compare
PS417_04650 -2.8 -0.8 D-alanine--D-alanine ligase compare
PS417_26730 -2.8 -0.8 pyrroline-5-carboxylate reductase compare
PS417_26990 -2.7 -0.8 RNA pyrophosphohydrolase compare
PS417_10720 -2.7 -6.6 chemotaxis protein CheY compare
PS417_27305 -2.7 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_19605 -2.7 -1.3 hypothetical protein compare
PS417_16370 -2.7 -7.3 chemotaxis protein CheY compare
PS417_21705 -2.7 -4.3 arginine N-succinyltransferase compare
PS417_27245 -2.6 -3.0 aminotransferase DegT compare
PS417_22780 -2.6 -3.1 XRE family transcriptional regulator compare
PS417_16465 -2.6 -5.3 sirohydrochlorin ferrochelatase compare
PS417_08205 -2.6 -2.0 acetyltransferase compare
PS417_06645 -2.5 -9.1 RNA polymerase-associated protein RapA compare
PS417_24705 -2.5 -2.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_02950 -2.5 -3.0 tRNA-dihydrouridine synthase B compare
PS417_27010 -2.5 -6.5 threonine dehydratase compare
PS417_08185 -2.5 -3.8 glycosyl transferase compare
PS417_15095 -2.4 -3.0 hypothetical protein compare
PS417_15090 -2.4 -2.6 hypothetical protein compare
PS417_07560 -2.4 -1.8 universal stress protein UspA compare
PS417_04900 -2.3 -7.3 amino acid ABC transporter substrate-binding protein compare
PS417_03455 -2.3 -1.6 type III secretion protein compare
PS417_22775 -2.3 -8.3 histidine kinase compare
PS417_24835 -2.3 -2.7 hypothetical protein compare
PS417_25715 -2.3 -3.2 anthranilate phosphoribosyltransferase compare
PS417_06680 -2.3 -5.8 nuclease PIN compare
PS417_20635 -2.3 -0.9 ABC transporter ATP-binding protein compare
PS417_02555 -2.2 -9.3 exoribonuclease R compare
PS417_15085 -2.2 -3.6 ATPase AAA compare
PS417_20715 -2.2 -1.6 cytochrome Cbb3 compare
PS417_08155 -2.2 -1.2 integration host factor subunit beta compare
PS417_03930 -2.2 -6.9 thymidine phosphorylase compare
PS417_23900 -2.2 -6.4 poly(A) polymerase compare
PS417_26225 -2.2 -3.6 electron transfer flavoprotein subunit beta compare
PS417_16555 -2.2 -1.7 cupin compare
PS417_26230 -2.1 -3.0 electron transfer flavoprotein subunit alpha compare
PS417_24275 -2.1 -10.1 diguanylate phosphodiesterase compare
PS417_24500 -2.1 -3.1 DEAD/DEAH box helicase compare
PS417_27595 -2.1 -1.8 recombinase XerC compare
PS417_21700 -2.1 -3.9 arginine N-succinyltransferase compare
PS417_20705 -2.1 -3.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_18545 -2.1 -2.4 cell division protein compare
PS417_02270 -2.1 -2.9 carbamoyltransferase compare
PS417_01570 -2.1 -0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01710 -2.0 -4.3 histidine utilization repressor compare
PS417_19760 -2.0 -3.8 flagellar basal body protein FliL compare
PS417_27800 -2.0 -3.1 exodeoxyribonuclease III compare
PS417_04595 -2.0 -1.8 cell division protein MraZ compare


Specific Phenotypes

For 6 genes in this experiment