Experiment set19IT002 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_21

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.8 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2371 -5.3 -8.1 Sulphite reductase hemoprotein, beta subunit compare
PP_0083 -5.3 -8.1 tryptophan synthase beta chain compare
PP_0967 -5.3 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2168 -5.1 -12.9 Transaldolase compare
PP_0422 -4.7 -5.8 Indole-3-glycerol phosphate synthase compare
PP_4696 -4.5 -6.2 Nitrogen regulation protein NR(I) compare
PP_3511 -4.5 -7.9 Branched-chain-amino-acid aminotransferase compare
PP_5347 -4.5 -13.4 pyruvate carboxylase subunit A compare
PP_2327 -4.4 -7.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0082 -4.3 -7.5 tryptophan synthase alpha chain compare
PP_1985 -4.2 -6.0 3-isopropylmalate dehydratase large subunit compare
PP_5185 -4.2 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1079 -4.1 -7.3 Ornithine carbamoyltransferase compare
PP_1988 -4.1 -7.0 3-isopropylmalate dehydrogenase compare
PP_3999 -4.0 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4678 -4.0 -12.4 Ketol-acid reductoisomerase compare
PP_4909 -3.9 -8.3 phosphoserine phosphatase compare
PP_4680 -3.9 -13.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -3.7 -8.2 pyruvate carboxylase subunit B compare
PP_0966 -3.7 -8.7 Histidinol dehydrogenase compare
PP_4890 -3.6 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_5098 -3.6 -6.8 methionine biosynthesis protein MetW compare
PP_0290 -3.5 -7.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0289 -3.5 -7.5 Imidazoleglycerol-phosphate dehydratase compare
PP_5097 -3.5 -10.6 homoserine O-acetyltransferase compare
PP_1995 -3.4 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0184 -3.4 -6.4 Argininosuccinate lyase compare
PP_0292 -3.4 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5128 -3.3 -6.6 Dihydroxy-acid dehydratase compare
PP_3946 -3.2 -2.0 HTH-type transcriptional repressor NicR compare
PP_2001 -3.2 -9.2 O-succinylhomoserine sulfhydrylase compare
PP_1231 -3.2 -6.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4679 -3.2 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -3.2 -9.9 Argininosuccinate synthase compare
PP_0417 -3.1 -13.8 Anthranilate synthase component 1 compare
PP_5289 -3.1 -3.9 Acetylglutamate kinase compare
PP_5155 -2.9 -6.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0364 -2.9 -9.8 pimeloyl-[acp] methyl ester esterase compare
PP_2328 -2.9 -7.1 Phosphoadenosine phosphosulfate reductase compare
PP_0366 -2.7 -4.9 dethiobiotin synthetase compare
PP_0365 -2.7 -8.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1733 -2.7 -5.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_0965 -2.7 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5095 -2.7 -1.8 pyrroline-5-carboxylate reductase compare
PP_1022 -2.7 -6.6 glucose 6-phosphate-1-dehydrogenase compare
PP_5303 -2.6 -4.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0363 -2.6 -9.4 8-amino-7-oxononanoate synthase compare
PP_5348 -2.5 -8.8 Transcriptional regulator, LysR family compare
PP_1362 -2.5 -4.6 pyruvate kinase II compare
PP_1025 -2.5 -9.7 2-isopropylmalate synthase compare
PP_5014 -2.5 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0362 -2.5 -9.5 Biotin synthase compare
PP_4984 -2.4 -7.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0421 -2.4 -6.1 Anthranilate phosphoribosyltransferase compare
PP_2414 -2.4 -1.8 conserved exported protein of unknown function compare
PP_4700 -2.4 -2.8 pantothenate synthetase compare
PP_2370 -2.4 -3.0 conserved protein of unknown function compare
PP_2378 -2.3 -3.8 Fe/S biogenesis protein NfuA compare
PP_4126 -2.3 -2.7 NADH-quinone oxidoreductase subunit I compare
PP_4902 -2.2 -3.3 Oligoribonuclease compare
PP_0393 -2.2 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5104 -2.2 -7.6 thiazole synthase compare
PP_4964 -2.1 -4.1 D-erythrose 4-phosphate dehydrogenase compare
PP_0735 -2.1 -2.7 molybdopterin-synthase adenylyltransferase compare
PP_0566 -2.1 -1.7 translation-related factor compare
PP_3417 -2.0 -4.4 D-gluconate transporter compare
PP_0001 -2.0 -1.7 probable chromosome-partitioning protein compare
PP_5350 -1.9 -3.4 Transcriptional regulator, RpiR family compare
PP_4268 -1.9 -2.2 nucleoid-associated broad specificity regulator compare
PP_4058 -1.9 -7.3 1,4-alpha-glucan branching enzyme compare
PP_1233 -1.9 -4.0 sulfurtransferase compare
PP_5015 -1.8 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0914 -1.8 -6.5 GGDEF domain protein compare
PP_0420 -1.8 -5.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1381 -1.8 -1.7 4-carboxymuconolactone decarboxylase compare
PP_1734 -1.8 -3.8 Probable septum site-determining protein MinC compare
PP_1654 -1.7 -3.2 cysteine synthase B compare
PP_0787 -1.7 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1986 -1.7 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_0547 -1.6 -5.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4936 -1.6 -6.9 O-antigen polymerase compare
PP_4804 -1.6 -3.4 RlpA-like lipoprotein compare
PP_1898 -1.6 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1664 -1.6 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_5217 -1.5 -8.0 Polyphosphate kinase compare
PP_1011 -1.5 -5.9 glucokinase compare
PP_4785 -1.5 -7.5 conserved exported protein of unknown function compare
PP_5313 -1.5 -3.8 DNA-binding protein HU-alpha compare
PP_4560 -1.5 -1.4 putative Ribonuclease BN compare
PP_0291 -1.4 -1.4 conserved protein of unknown function compare
PP_1198 -1.4 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4910 -1.4 -3.8 conserved protein of unknown function compare
PP_1656 -1.3 -4.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_2402 -1.3 -2.2 putative Sensor histidine kinase compare
PP_4368 -1.3 -4.6 flagellar motor switch protein compare
PP_5227 -1.3 -5.9 diaminopimelate decarboxylase compare
PP_2088 -1.3 -2.3 RNA polymerase sigma factor SigX compare
PP_4369 -1.3 -5.8 Flagellar M-ring protein compare
PP_4994 -1.2 -3.4 conserved protein of unknown function compare
PP_1304 -1.2 -5.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4922 -1.2 -6.8 Phosphomethylpyrimidine synthase compare
PP_4004 -1.2 -3.4 DNA translocase FtsK compare
PP_4782 -1.2 -2.6 Phosphomethylpyrimidine kinase compare
PP_1493 -1.2 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4895 -1.2 -2.4 tRNA dimethylallyltransferase compare
PP_1322 -1.2 -1.9 putative Lipoprotein compare
PP_4938 -1.2 -8.1 putative Glycosyl transferase compare
PP_4045 -1.2 -1.7 conserved protein of unknown function compare
PP_4370 -1.2 -2.2 Flagellar hook-basal body complex protein FliE compare
PP_3580 -1.2 -2.2 conserved protein of unknown function compare
PP_5507 -1.1 -1.9 protein of unknown function compare
PP_2302 -1.1 -3.2 DNA-binding, ATP-dependent protease compare
PP_4480 -1.1 -5.3 arginine N-succinyltransferase, subunit alpha compare
PP_5198 -1.1 -2.3 conserved protein of unknown function compare
PP_0122 -1.1 -2.4 conserved exported protein of unknown function compare
PP_1348 -1.1 -5.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4122 -1.1 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3034 -1.1 -2.8 putative Regulator protein compare
PP_4997 -1.1 -1.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1994 -1.1 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_5035 -1.0 -4.6 Histidine utilization repressor compare
PP_4989 -1.0 -2.0 Protein PilJ compare
PP_2388 -1.0 -2.6 Transporter, LysE family compare
PP_5639 -1.0 -4.4 conserved exported protein of unknown function compare
PP_1303 -1.0 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_0406 -1.0 -2.6 Nucleotidyltransferase family protein compare
PP_4622 -1.0 -3.2 Hmg transcriptional repressor compare
PP_1655 -1.0 -1.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0378 -1.0 -4.2 Pyrroloquinoline-quinone synthase compare
PP_2337 -1.0 -1.9 aconitate isomerase compare
PP_3378 -1.0 -1.7 putative 2-ketogluconokinase compare
PP_1632 -0.9 -1.8 conserved protein of unknown function compare
PP_1009 -0.9 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5202 -0.9 -1.6 putative cell division protein compare
PP_4693 -0.9 -3.2 RNA polymerase-binding transcription factor DksA compare
PP_0725 -0.9 -3.3 conserved hypothetical TPR repeat protein compare
PP_4699 -0.9 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4359 -0.9 -3.4 Flagellar protein FliL compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_2681 -0.9 -0.9 coenzyme PQQ synthesis protein D compare
PP_3245 -0.9 -1.5 conserved protein of unknown function compare
PP_4529 -0.9 -2.7 conserved protein of unknown function compare
PP_1013 -0.9 -2.8 Sensor histidine kinase compare
PP_3748 -0.9 -1.5 conserved hypothetical protein compare
PP_0775 -0.9 -1.6 conserved protein of unknown function compare
PP_4379 -0.8 -1.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4662 -0.8 -2.4 conserved protein of unknown function compare
PP_4406 -0.8 -2.3 conserved protein of unknown function compare
PP_1568 -0.8 -1.1 conserved protein of unknown function compare
PP_0339 -0.8 -1.1 Pyruvate dehydrogenase E1 component compare
PP_1015 -0.8 -3.6 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_2081 -0.8 -3.4 putative phosphoenolpyruvate synthase regulatory protein compare
PP_1912 -0.8 -2.7 Phosphate acyltransferase compare
PP_2107 -0.8 -1.3 conserved protein of unknown function compare
PP_3409 -0.8 -2.0 putative Cobalamin biosynthesis protein cobE compare
PP_3824 -0.8 -1.4 conserved exported protein of unknown function compare
PP_4226 -0.8 -2.1 conserved protein of unknown function compare
PP_2073 -0.8 -1.5 Acetyltransferase, GNAT family compare
PP_1672 -0.8 -3.3 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4726 -0.8 -1.5 Chaperone protein DnaJ compare
PP_3339 -0.8 -3.1 conserved exported protein of unknown function compare
PP_0379 -0.8 -2.4 Coenzyme PQQ synthesis protein B compare
PP_5090 -0.8 -2.3 putative cell division protein compare
PP_1770 -0.8 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4124 -0.8 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_1017 -0.8 -4.2 mannose/glucose ABC transporter, permease protein compare
PP_1444 -0.8 -5.0 quinoprotein glucose dehydrogenase compare
PP_0888 -0.8 -1.0 Photosynthetic apparatus regulatory protein RegA compare
PP_3539 -0.8 -1.3 putative Transcriptional regulator compare
PP_4005 -0.8 -1.4 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_5508 -0.8 -1.0 conserved protein of unknown function compare
PP_1679 -0.8 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1128 -0.8 -1.8 OmpA family protein compare
PP_4265 -0.7 -0.5 DNA-binding transcriptional dual regulator compare
PP_0839 -0.7 -2.0 tRNA Cm32/Um32 methyltransferase compare
PP_2806 -0.7 -2.9 Transcriptional regulator, TetR family compare
PP_4008 -0.7 -2.3 ATP-dependent serine protease compare
PP_0101 -0.7 -3.0 putative sulfate transporter compare
PP_1426 -0.7 -4.9 L-aspartate oxidase compare
PP_0872 -0.7 -2.7 Peptide chain release factor 3 compare
PP_1237 -0.7 -0.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4561 -0.7 -0.7 stress response protein compare
PP_5039 -0.7 -1.6 conserved protein of unknown function compare
PP_4875 -0.7 -1.9 conserved membrane protein of unknown function compare
PP_4879 -0.7 -1.7 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_1872 -0.7 -4.3 glutamate-pyruvate aminotransferase compare
PP_2893 -0.7 -4.7 conserved exported protein of unknown function compare
PP_2203 -0.7 -1.0 conserved protein of unknown function compare
PP_4941 -0.7 -2.2 conserved exported protein of unknown function compare
PP_1016 -0.7 -4.1 mannose/glucose ABC transporter, permease protein compare
PP_5426 -0.7 -2.8 conserved protein of unknown function compare
PP_5007 -0.7 -1.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2898 -0.7 -2.1 conserved exported protein of unknown function compare
PP_2136 -0.7 -2.7 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2016 -0.7 -3.0 conserved protein of unknown function compare
PP_5628 -0.7 -1.9 conserved protein of unknown function compare
PP_1629 -0.7 -2.9 Protein RecA compare
PP_4344 -0.7 -4.0 flagellar export pore protein compare
PP_4392 -0.7 -3.2 chemotaxis protein methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms