Experiment set19IT001 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22565 -4.8 -1.7 formyltetrahydrofolate deformylase compare
PS417_06375 -4.1 -1.5 deoxycytidine triphosphate deaminase compare
PS417_24745 -3.7 -5.6 gamma-glutamyl phosphate reductase compare
PS417_22450 -3.6 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_27865 -3.4 -4.4 LysR family transcriptional regulator compare
PS417_08155 -3.4 -2.6 integration host factor subunit beta compare
PS417_27870 -3.2 -5.3 ATP-dependent DNA helicase RecG compare
PS417_02280 -3.0 -2.1 GlcNAc-PI de-N-acetylase compare
PS417_08090 -2.9 -1.3 3-oxoacyl-ACP reductase compare
PS417_23545 -2.9 -3.8 gamma-glutamyl kinase compare
PS417_08135 -2.9 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23770 -2.9 -2.0 exodeoxyribonuclease V subunit alpha compare
PS417_08125 -2.8 -1.0 prephenate dehydratase compare
PS417_06680 -2.8 -9.9 nuclease PIN compare
PS417_04650 -2.7 -1.2 D-alanine--D-alanine ligase compare
PS417_26990 -2.7 -1.3 RNA pyrophosphohydrolase compare
PS417_02975 -2.3 -5.9 3-dehydroquinate dehydratase compare
PS417_04365 -2.3 -1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21655 -2.3 -1.5 aspartate kinase compare
PS417_06370 -2.3 -2.3 cold-shock protein compare
PS417_16490 -2.1 -1.6 cell division protein FtsK compare
PS417_27800 -2.0 -3.1 exodeoxyribonuclease III compare
PS417_16555 -2.0 -2.7 cupin compare
PS417_18310 -2.0 -1.8 hypothetical protein compare
PS417_27195 -2.0 -1.9 N-acetylglutamate synthase compare
PS417_03260 -2.0 -1.9 5S ribosomal RNA compare
PS417_02555 -1.9 -9.7 exoribonuclease R compare
PS417_01920 -1.9 -1.2 ATP-dependent protease subunit HslV compare
PS417_23950 -1.9 -2.8 polynucleotide phosphorylase/polyadenylase compare
PS417_27795 -1.9 -1.2 orotate phosphoribosyltransferase compare
PS417_04410 -1.8 -2.9 hypothetical protein compare
PS417_23810 -1.8 -9.5 acetolactate synthase 3 catalytic subunit compare
PS417_12855 -1.8 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_28070 -1.8 -9.6 phosphate ABC transporter ATP-binding protein compare
PS417_19350 -1.7 -3.3 GTP cyclohydrolase compare
PS417_02415 -1.7 -3.5 phosphoserine phosphatase compare
PS417_00370 -1.7 -1.5 hypothetical protein compare
PS417_20025 -1.7 -2.6 alpha-ribazole phosphatase compare
PS417_21575 -1.6 -5.5 chemotaxis protein compare
PS417_20715 -1.6 -3.1 cytochrome Cbb3 compare
PS417_08540 -1.5 -2.9 RNA helicase compare
PS417_07640 -1.5 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_24500 -1.5 -4.3 DEAD/DEAH box helicase compare
PS417_22990 -1.5 -2.2 iron dicitrate transport regulator FecR compare
PS417_22445 -1.5 -2.4 ATP-dependent DNA helicase RuvB compare
PS417_06245 -1.5 -2.2 zinc metallopeptidase RseP compare
PS417_27300 -1.4 -1.0 cell division protein ZapA compare
PS417_01560 -1.4 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_27425 -1.4 -5.0 exopolyphosphatase compare
PS417_02485 -1.4 -4.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24705 -1.4 -1.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_23025 -1.4 -4.9 murein transglycosylase compare
PS417_27245 -1.4 -2.9 aminotransferase DegT compare
PS417_03560 -1.4 -1.9 GTP-binding protein compare
PS417_06675 -1.3 -2.8 ATP-dependent helicase compare
PS417_23580 -1.3 -1.4 peptidylprolyl isomerase compare
PS417_21630 -1.3 -1.4 magnesium transporter compare
PS417_24585 -1.3 -7.4 AMP nucleosidase compare
PS417_04595 -1.3 -2.4 cell division protein MraZ compare
PS417_23915 -1.3 -5.2 pantoate--beta-alanine ligase compare
PS417_00900 -1.2 -1.9 4-aminobutyrate aminotransferase compare
PS417_05010 -1.2 -1.8 IclR family transcriptional regulator compare
PS417_21430 -1.2 -2.0 3-oxoacyl-ACP synthase compare
PS417_00185 -1.2 -2.6 tryptophan synthase subunit beta compare
PS417_25315 -1.2 -3.6 membrane protein compare
PS417_07710 -1.2 -4.1 membrane protein compare
PS417_27040 -1.1 -1.1 3-phosphoglycerate dehydrogenase compare
PS417_27875 -1.1 -7.3 histidine kinase compare
PS417_22210 -1.1 -1.4 AraC family transcriptional regulator compare
PS417_23805 -1.1 -3.6 acetolactate synthase 3 regulatory subunit compare
PS417_26530 -1.1 -1.2 hypothetical protein compare
PS417_20785 -1.1 -2.3 transcriptional regulator compare
PS417_19650 -1.1 -3.2 chemotaxis protein CheW compare
PS417_06635 -1.1 -1.6 ferredoxin compare
PS417_20985 -1.1 -1.4 porin compare
PS417_20700 -1.1 -6.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_10425 -1.1 -1.7 hypothetical protein compare
PS417_05535 -1.1 -1.4 Fis family transcriptional regulator compare
PS417_28080 -1.1 -6.7 phosphate ABC transporter permease compare
PS417_15090 -1.1 -2.5 hypothetical protein compare
PS417_24650 -1.0 -1.7 membrane protein compare
PS417_19885 -1.0 -1.8 flagellar basal body rod protein FlgG compare
PS417_22520 -1.0 -1.9 histidine kinase compare
PS417_02720 -1.0 -0.9 TetR family transcriptional regulator compare
PS417_04420 -1.0 -5.6 histidinol dehydrogenase compare
PS417_05815 -1.0 -3.2 recombinase RecA compare
PS417_22895 -1.0 -4.4 tyrosine recombinase XerD compare
PS417_19955 -1.0 -1.9 hypothetical protein compare
PS417_15105 -1.0 -5.2 membrane protein compare
PS417_06200 -1.0 -3.8 protein-PII uridylyltransferase compare
PS417_25815 -1.0 -2.6 magnesium transporter ApaG compare
PS417_12805 -1.0 -6.0 glycogen branching protein compare
PS417_24525 -1.0 -2.0 nuclease compare
PS417_22550 -0.9 -2.4 ATP-binding protein compare
PS417_06205 -0.9 -4.8 methionine aminopeptidase compare
PS417_23775 -0.9 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_00385 -0.9 -1.0 Fur family transcriptional regulator compare
PS417_02005 -0.9 -4.9 glutamate synthase compare
PS417_02990 -0.9 -1.9 hypothetical protein compare
PS417_02225 -0.9 -2.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_02270 -0.9 -2.7 carbamoyltransferase compare
PS417_27135 -0.9 -0.8 glutamine synthetase compare
PS417_22855 -0.9 -1.8 ssDNA exonuclease RecJ compare
PS417_07565 -0.9 -2.1 hypothetical protein compare
PS417_08685 -0.9 -1.3 flagellar hook-length control protein FliK compare
PS417_26685 -0.9 -1.2 hypothetical protein compare
PS417_18160 -0.9 -2.2 YeeE/YedE compare
PS417_14755 -0.9 -2.1 UV damage repair endonuclease UvdE compare
PS417_16510 -0.9 -3.1 Clp protease ClpX compare
PS417_27640 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_26370 -0.9 -3.4 RNA helicase compare
PS417_01580 -0.9 -1.2 imidazole glycerol phosphate synthase compare
PS417_23375 -0.9 -1.8 cytochrome C oxidase compare
PS417_02475 -0.9 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_02510 -0.9 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18560 -0.9 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_20705 -0.9 -2.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_16005 -0.8 -2.4 ATPase compare
PS417_28225 -0.8 -1.1 hypothetical protein compare
PS417_21425 -0.8 -1.6 4-amino-4-deoxychorismate lyase compare
PS417_28515 -0.8 -2.6 16S rRNA methyltransferase compare
PS417_06075 -0.8 -0.9 hypothetical protein compare
PS417_04290 -0.8 -1.9 hypothetical protein compare
PS417_00220 -0.8 -1.0 hypothetical protein compare
PS417_19690 -0.8 -3.9 histidine kinase compare
PS417_00180 -0.8 -1.1 tryptophan synthase subunit alpha compare
PS417_16855 -0.8 -0.9 cation:proton antiporter compare
PS417_01855 -0.8 -2.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_16195 -0.8 -1.0 AraC family transcriptional regulator compare
PS417_06335 -0.8 -1.0 S-formylglutathione hydrolase compare
PS417_07875 -0.8 -0.8 hypothetical protein compare
PS417_02895 -0.8 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_11075 -0.8 -1.4 hydroxypyruvate isomerase compare
PS417_12310 -0.8 -3.3 methionine synthase compare
PS417_25390 -0.8 -2.7 MFS transporter compare
PS417_23385 -0.8 -4.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_18055 -0.8 -0.8 general secretion pathway protein GspK compare
PS417_12355 -0.8 -1.5 magnesium chelatase compare
PS417_19200 -0.8 -1.5 fumarate hydratase compare
PS417_19425 -0.8 -0.8 allantoicase compare
PS417_06540 -0.8 -1.3 membrane protein compare
PS417_26890 -0.7 -2.8 dihydroxy-acid dehydratase compare
PS417_14045 -0.7 -2.2 alkyl hydroperoxide reductase compare
PS417_17680 -0.7 -1.0 ABC transporter compare
PS417_14950 -0.7 -2.9 structural protein MipA compare
PS417_23900 -0.7 -3.5 poly(A) polymerase compare
PS417_05475 -0.7 -1.6 arginase compare
PS417_01850 -0.7 -1.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26650 -0.7 -5.1 histidine kinase compare
PS417_02560 -0.7 -1.1 23S rRNA methyltransferase compare
PS417_27515 -0.7 -2.6 heme biosynthesis protein HemY compare
PS417_25860 -0.7 -3.7 glycerol-3-phosphate acyltransferase compare
PS417_23825 -0.7 -3.0 penicillin-binding protein compare
PS417_06825 -0.7 -1.4 hypothetical protein compare
PS417_10985 -0.7 -0.8 NADH:flavin oxidoreductase compare
PS417_05820 -0.7 -1.6 recombinase RecX compare
PS417_14280 -0.7 -2.1 hypothetical protein compare
PS417_26985 -0.7 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01635 -0.7 -4.5 nitrogen regulation protein NR(I) compare
PS417_08770 -0.7 -1.5 hypothetical protein compare
PS417_28075 -0.7 -3.0 phosphate ABC transporter permease compare
PS417_02000 -0.7 -3.8 glutamate synthase compare
PS417_28280 -0.7 -1.1 hypothetical protein compare
PS417_05200 -0.7 -1.9 DNA recombination protein RecO compare
PS417_07700 -0.7 -1.2 chromosome partitioning protein ParA compare
PS417_09915 -0.7 -0.7 hypothetical protein compare
PS417_25270 -0.7 -1.7 NrdR family transcriptional regulator compare
PS417_03475 -0.7 -0.7 type III secretion protein compare
PS417_26900 -0.6 -0.9 L-cystine transporter tcyP compare
PS417_27045 -0.6 -1.2 ATPase compare
PS417_09545 -0.6 -1.6 aldehyde-activating protein compare
PS417_09085 -0.6 -1.0 hypothetical protein compare
PS417_26105 -0.6 -2.2 ABC transporter permease compare
PS417_01620 -0.6 -1.7 preprotein translocase subunit SecB compare
PS417_11945 -0.6 -2.4 hypothetical protein compare
PS417_01210 -0.6 -3.9 hypothetical protein compare
PS417_13145 -0.6 -1.7 50S ribosomal protein L21 compare
PS417_16295 -0.6 -2.2 hypothetical protein compare
PS417_26645 -0.6 -1.3 chemotaxis protein compare
PS417_03935 -0.6 -1.6 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_01030 -0.6 -1.1 glutamine ABC transporter substrate-binding protein compare
PS417_09440 -0.6 -1.4 MerR family transcriptional regulator compare
PS417_23835 -0.6 -2.3 hypothetical protein compare
PS417_07620 -0.6 -1.2 beta-hexosaminidase compare
PS417_20420 -0.6 -2.4 reverse transcriptase compare
PS417_00075 -0.6 -1.1 hypothetical protein compare
PS417_09035 -0.6 -2.1 hypothetical protein compare
PS417_03875 -0.6 -1.1 membrane protein compare
PS417_13165 -0.6 -1.5 peroxidase compare
PS417_19850 -0.6 -3.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_05865 -0.6 -1.3 hypothetical protein compare
PS417_15200 -0.6 -2.0 protein activator of alkane oxidation PraB compare
PS417_27595 -0.6 -1.3 recombinase XerC compare
PS417_04340 -0.6 -2.5 ribosome hibernation promoting factor HPF compare
PS417_05510 -0.6 -2.4 alpha/beta hydrolase compare
PS417_18595 -0.6 -2.3 3-isopropylmalate dehydratase compare
PS417_07140 -0.6 -1.3 peptidase M48 compare
PS417_05210 -0.6 -1.8 copper oxidase compare
PS417_02630 -0.6 -1.0 NAD synthetase compare
PS417_02575 -0.6 -1.7 membrane protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments