Experiment set19IT001 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_34

200 most important genes:

  gene name fitness t score description  
PP_0082 -4.6 -8.3 tryptophan synthase alpha chain compare
PP_0083 -4.4 -9.3 tryptophan synthase beta chain compare
PP_5014 -4.4 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1079 -4.3 -8.5 Ornithine carbamoyltransferase compare
PP_0967 -3.9 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0293 -3.8 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0184 -3.7 -9.5 Argininosuccinate lyase compare
PP_2862 -3.7 -11.1 Undecaprenyl-diphosphatase compare
PP_2168 -3.6 -11.1 Transaldolase compare
PP_0289 -3.6 -7.5 Imidazoleglycerol-phosphate dehydratase compare
PP_1231 -3.6 -6.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0966 -3.6 -11.4 Histidinol dehydrogenase compare
PP_4696 -3.5 -6.3 Nitrogen regulation protein NR(I) compare
PP_2371 -3.4 -7.0 Sulphite reductase hemoprotein, beta subunit compare
PP_0292 -3.3 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5347 -3.3 -11.7 pyruvate carboxylase subunit A compare
PP_2327 -3.1 -8.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4804 -3.1 -3.6 RlpA-like lipoprotein compare
PP_3999 -3.1 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5348 -3.0 -10.1 Transcriptional regulator, LysR family compare
PP_1986 -2.8 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_2001 -2.8 -9.4 O-succinylhomoserine sulfhydrylase compare
PP_4909 -2.8 -7.6 phosphoserine phosphatase compare
PP_5097 -2.8 -12.0 homoserine O-acetyltransferase compare
PP_0290 -2.7 -6.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4890 -2.7 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_1022 -2.7 -6.4 glucose 6-phosphate-1-dehydrogenase compare
PP_1733 -2.5 -5.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_5346 -2.5 -6.7 pyruvate carboxylase subunit B compare
PP_4678 -2.5 -13.2 Ketol-acid reductoisomerase compare
PP_0965 -2.5 -9.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1988 -2.4 -7.7 3-isopropylmalate dehydrogenase compare
PP_1362 -2.4 -5.1 pyruvate kinase II compare
PP_5185 -2.4 -5.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5289 -2.4 -4.6 Acetylglutamate kinase compare
PP_5128 -2.4 -7.7 Dihydroxy-acid dehydratase compare
PP_1995 -2.4 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2370 -2.4 -3.0 conserved protein of unknown function compare
PP_4680 -2.3 -12.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1985 -2.3 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_4785 -2.3 -7.1 conserved exported protein of unknown function compare
PP_4126 -2.3 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_5217 -2.3 -10.0 Polyphosphate kinase compare
PP_0422 -2.3 -5.6 Indole-3-glycerol phosphate synthase compare
PP_0366 -2.3 -7.3 dethiobiotin synthetase compare
PP_5098 -2.2 -8.1 methionine biosynthesis protein MetW compare
PP_1734 -2.2 -5.8 Probable septum site-determining protein MinC compare
PP_2402 -2.2 -3.2 putative Sensor histidine kinase compare
PP_5393 -2.2 -2.5 putative metal-binding chaperone compare
PP_1025 -2.2 -11.6 2-isopropylmalate synthase compare
PP_5303 -2.2 -5.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5155 -2.1 -3.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5015 -2.1 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0421 -2.0 -9.0 Anthranilate phosphoribosyltransferase compare
PP_1088 -2.0 -10.4 Argininosuccinate synthase compare
PP_1654 -2.0 -3.7 cysteine synthase B compare
PP_2328 -2.0 -6.3 Phosphoadenosine phosphosulfate reductase compare
PP_0362 -2.0 -10.1 Biotin synthase compare
PP_0417 -2.0 -13.7 Anthranilate synthase component 1 compare
PP_1898 -2.0 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1664 -1.9 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_3511 -1.9 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_4936 -1.9 -9.0 O-antigen polymerase compare
PP_4700 -1.9 -2.5 pantothenate synthetase compare
PP_4984 -1.9 -9.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0291 -1.9 -1.9 conserved protein of unknown function compare
PP_0363 -1.9 -10.1 8-amino-7-oxononanoate synthase compare
PP_4994 -1.9 -4.9 conserved protein of unknown function compare
PP_4679 -1.9 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4938 -1.8 -11.6 putative Glycosyl transferase compare
PP_3417 -1.8 -6.1 D-gluconate transporter compare
PP_0787 -1.8 -5.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1764 -1.7 -3.7 Phosphoglycolate phosphatase 2 compare
PP_5027 -1.7 -2.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0365 -1.6 -8.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4699 -1.6 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0364 -1.4 -5.2 pimeloyl-[acp] methyl ester esterase compare
PP_2145 -1.4 -3.3 beta-N-acetylglucosaminidase compare
PP_4943 -1.4 -1.8 putative Glycosyl transferase compare
PP_0420 -1.4 -6.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1426 -1.4 -8.8 L-aspartate oxidase compare
PP_5095 -1.3 -1.3 pyrroline-5-carboxylate reductase compare
PP_1233 -1.3 -4.1 sulfurtransferase compare
PP_4902 -1.3 -2.6 Oligoribonuclease compare
PP_4695 -1.3 -7.1 Sensory box histidine kinase compare
PP_2163 -1.3 -5.0 VacJ lipoprotein compare
PP_0547 -1.3 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0855 -1.3 -2.3 conserved protein of unknown function compare
PP_4124 -1.2 -3.8 NADH-quinone oxidoreductase subunit G compare
PP_0959 -1.2 -2.4 phospholipid ABC transporter compare
PP_2756 -1.2 -2.5 conserved protein of unknown function compare
PP_4693 -1.2 -3.8 RNA polymerase-binding transcription factor DksA compare
PP_5104 -1.2 -6.3 thiazole synthase compare
PP_1237 -1.1 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5639 -1.1 -5.3 conserved exported protein of unknown function compare
PP_1656 -1.1 -3.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1013 -1.1 -5.5 Sensor histidine kinase compare
PP_5350 -1.1 -2.8 Transcriptional regulator, RpiR family compare
PP_0406 -1.1 -2.5 Nucleotidyltransferase family protein compare
PP_0735 -1.1 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_2307 -1.1 -1.8 conserved protein of unknown function compare
PP_4910 -1.1 -2.5 conserved protein of unknown function compare
PP_2681 -1.1 -1.8 coenzyme PQQ synthesis protein D compare
PP_1872 -1.0 -5.8 glutamate-pyruvate aminotransferase compare
PP_4122 -1.0 -1.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1528 -1.0 -1.9 conserved protein of unknown function compare
PP_3892 -1.0 -1.5 conserved protein of unknown function compare
PP_3102 -1.0 -3.4 conserved protein of unknown function compare
PP_5230 -1.0 -2.6 Tyrosine recombinase XerC compare
PP_4199 -1.0 -1.3 putative Lipoprotein compare
PP_1303 -1.0 -4.6 Sulfate adenylyltransferase subunit 2 compare
PP_4131 -1.0 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_1304 -1.0 -5.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5313 -1.0 -1.2 DNA-binding protein HU-alpha compare
PP_5507 -0.9 -3.1 protein of unknown function compare
PP_3532 -0.9 -2.0 Transcriptional regulator, AsnC family compare
PP_0393 -0.9 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1041 -0.9 -1.6 twin arginine protein export complex subunit compare
PP_4940 -0.9 -5.4 Putative glycosyltransferase compare
PP_5203 -0.9 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_0434 -0.9 -3.6 Anhydro-N-acetylmuramic acid kinase compare
PP_0138 -0.9 -6.4 conserved membrane protein of unknown function compare
PP_4268 -0.9 -1.0 nucleoid-associated broad specificity regulator compare
PP_4989 -0.9 -2.7 Protein PilJ compare
PP_4997 -0.9 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4045 -0.9 -2.1 conserved protein of unknown function compare
PP_0960 -0.9 -3.1 phospholipid ABC transporter binding protein compare
PP_3506 -0.9 -3.4 Magnesium chelatase, subunit ChII compare
PP_5321 -0.9 -4.2 two-component system sensory histidine kinase conserved
PP_1679 -0.9 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2087 -0.9 -1.8 CmpX protein compare
PP_2750 -0.9 -2.4 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4964 -0.9 -1.7 D-erythrose 4-phosphate dehydrogenase compare
PP_4480 -0.9 -4.4 arginine N-succinyltransferase, subunit alpha compare
PP_2032 -0.9 -3.4 putative ATPase compare
PP_2378 -0.9 -1.9 Fe/S biogenesis protein NfuA compare
PP_1011 -0.8 -5.2 glucokinase compare
PP_0961 -0.8 -4.7 toluene tolerance protein compare
PP_2336 -0.8 -2.4 aconitate hydratase 1 compare
PP_4829 -0.8 -2.7 putative precorrin-3B synthase compare
PP_4738 -0.8 -2.5 conserved exported protein of unknown function compare
PP_4782 -0.8 -2.9 Phosphomethylpyrimidine kinase compare
PP_1355 -0.8 -5.0 Muropeptide permease AmpG compare
PP_1778 -0.8 -5.1 Lipopolysaccharide ABC export system, permease protein compare
PP_1568 -0.8 -1.3 conserved protein of unknown function compare
PP_4977 -0.8 -5.2 5,10-methylenetetrahydrofolate reductase compare
PP_2375 -0.8 -6.1 cobalamin-dependent methionine synthase compare
PP_4058 -0.8 -4.6 1,4-alpha-glucan branching enzyme compare
PP_0789 -0.8 -2.6 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0313 -0.8 -1.3 putative electron transfer flavoprotein beta subunit compare
PP_1217 -0.8 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4828 -0.8 -1.3 Precorrin-8X methylmutase compare
PP_3505 -0.8 -1.3 conserved protein of unknown function compare
PP_5610 -0.8 -1.3 protein of unknown function compare
PP_3164 -0.8 -3.0 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_1912 -0.8 -3.0 Phosphate acyltransferase compare
PP_4109 -0.8 -1.3 conserved protein of unknown function compare
PP_4129 -0.8 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1038 -0.8 -1.8 conserved protein of unknown function compare
PP_3508 -0.7 -2.2 Protein CobW compare
PP_5110 -0.7 -2.1 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4922 -0.7 -5.0 Phosphomethylpyrimidine synthase compare
PP_4009 -0.7 -2.6 ATP-dependent Clp protease adapter protein ClpS compare
PP_1655 -0.7 -1.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4546 -0.7 -2.2 ATP-dependent helicase HrpA compare
PP_0339 -0.7 -0.7 Pyruvate dehydrogenase E1 component compare
PP_4338 -0.7 -3.5 Chemotaxis histidine kinase CheA compare
PP_3378 -0.7 -1.7 putative 2-ketogluconokinase compare
PP_1348 -0.7 -3.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4937 -0.7 -2.1 toluene tolerance protein compare
PP_0958 -0.7 -3.5 phospholipid ABC transporter ATP-binding subunit compare
PP_0377 -0.7 -1.2 coenzyme PQQ synthesis protein D compare
PP_0025 -0.7 -1.1 hypothetical protein compare
PP_5227 -0.7 -3.3 diaminopimelate decarboxylase compare
PP_4262 -0.7 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4247 -0.7 -1.3 Exonuclease compare
PP_0273 -0.7 -1.8 conserved protein of unknown function compare
PP_0405 -0.7 -4.1 conserved protein of unknown function compare
PP_1672 -0.7 -3.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4571 -0.7 -3.1 cysteine synthase A compare
PP_2302 -0.7 -2.9 DNA-binding, ATP-dependent protease compare
PP_0949 -0.7 -2.3 putative ATP-binding protein UPF0042 compare
PP_2429 -0.7 -1.5 putative Membrane protein compare
PP_0962 -0.7 -1.4 toluene-tolerance protein compare
PP_0378 -0.7 -4.0 Pyrroloquinoline-quinone synthase compare
PP_2661 -0.7 -3.2 conserved protein of unknown function compare
PP_1799 -0.7 -4.9 GDP-mannose 4,6-dehydratase compare
PP_1714 -0.6 -2.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_2322 -0.6 -2.6 Major outer membrane lipoprotein compare
PP_4827 -0.6 -4.6 Precorrin-2 C(20)-methyltransferase compare
PP_0643 -0.6 -1.1 protein of unknown function compare
PP_1099 -0.6 -1.7 Cold shock protein CapB compare
PP_1681 -0.6 -4.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2337 -0.6 -1.7 aconitate isomerase compare
PP_1779 -0.6 -3.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4575 -0.6 -2.4 Urea amidolyase-related protein compare
PP_5017 -0.6 -0.9 Sec-independent protein translocase protein TatB compare
PP_4701 -0.6 -0.8 glucose-6-phosphate isomerase compare
PP_2844 -0.6 -2.5 Urease subunit beta compare
PP_1739 -0.6 -1.3 conserved membrane protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms