Experiment set18S379 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu2522 -8.2 -5.7 agrobacterium chromosomal virulence protein B compare
Atu4614 -7.2 -5.0 glycosyltransferase compare
Atu3544 -6.6 -12.0 arsenical pump membrane protein compare
Atu0030 -6.0 -1.8 phosphocarrier protein HPr compare
Atu2183 -5.8 -11.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3311 -5.6 -16.6 phosphomannose isomerase compare
Atu4618 -5.4 -13.4 dTDP-rhamnose-3,5-epimerase compare
Atu1359 -5.0 -1.5 dnaK deletion suppressor protein compare
Atu6098 -5.0 -1.5 transcriptional regulator, HTH family compare
Atu3353 -5.0 -9.4 mannose-1-phosphate guanylyltransferase compare
Atu4166 -4.7 -2.4 UDP-glucose 4-epimerase compare
Atu0978 -4.7 -3.2 two component response regulator compare
Atu4615 -4.6 -9.3 glucose-1-phosphate thymidylyltransferase compare
Atu4617 -4.5 -8.3 dTDP-D-glucose-4,6-dehydratase compare
Atu4613 -4.4 -11.6 glycosyltransferase compare
Atu4616 -4.4 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu2379 -4.2 -11.1 phosphomannomutase compare
Atu0039 -3.9 -2.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -3.8 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0784 -3.6 -2.8 hypothetical protein compare
Atu3598 -3.4 -1.7 thiol:disulfide interchange protein compare
Atu3707 -3.3 -2.1 phosphoserine aminotransferase compare
Atu2521 -3.2 -9.7 Protein regulated by acid pH compare
Atu0041 -3.2 -2.1 glutamine amidotransferase compare
Atu4610 -3.2 -8.1 sugar nucleotide epimerase/dehydratase compare
Atu1644 -3.1 -2.7 hypothetical protein compare
Atu0050 -3.0 -2.0 two component response regulator compare
Atu4609 -2.9 -10.4 glycosyltransferase compare
Atu2832 -2.8 -4.7 tRNA modification GTPase compare
Atu3732 -2.8 -11.8 hemolysin compare
Atu0690 -2.8 -2.1 hypothetical protein compare
Atu3908 -2.8 -12.3 GntR family transcriptional regulator compare
Atu0876 -2.8 -1.9 superoxide dismutase compare
Atu4711 -2.8 -7.1 two component sensor kinase compare
Atu2289 -2.7 -11.8 anthranilate synthase component I and II compare
Atu4608 -2.7 -10.1 hypothetical protein compare
Atu1705 -2.7 -4.6 SEC-independent protein translocase protein compare
Atu1417 -2.6 -7.8 enoyl-CoA hydratase compare
Atu0979 -2.6 -5.5 two component sensor kinase compare
Atu4317 -2.6 -2.1 TetR family transcriptional regulator compare
Atu0026 -2.6 -1.0 hypothetical protein compare
Atu8095 -2.5 -7.0 hypothetical protein compare
Atu5430 -2.5 -1.6 hypothetical protein compare
Atu0894 -2.4 -2.3 ABC transporter, membrane spanning protein compare
Atu1446 -2.4 -2.2 two component response regulator compare
Atu4072 -2.4 -1.6 nodulation protein N compare
Atu0051 -2.3 -2.3 two component sensor kinase compare
Atu1588 -2.3 -7.2 homoserine dehydrogenase compare
Atu1646 -2.3 -4.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu1645 -2.3 -6.5 ABC transporter, substrate binding protein compare
Atu3706 -2.3 -6.6 D-3-phosphoglycerate dehydrogenase compare
Atu1750 -2.2 -4.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu0977 -2.2 -3.4 serine protease DO-like protease compare
Atu2274 -2.2 -6.9 cation efflux system protein compare
Atu3469 -2.2 -2.4 phosphoglyceromutase compare
Atu0040 -2.2 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu8167 -2.2 -8.0 putative transmembrane protein compare
Atu3613 -2.1 -5.8 hypothetical protein compare
Atu0692 -2.1 -8.2 glutathione-regulated potassium-efflux system protein compare
Atu0678 -2.1 -4.7 histidyl-tRNA synthetase compare
Atu3517 -2.1 -4.0 acetyltransferase compare
Atu4773 -2.1 -1.0 two component response regulator compare
Atu0331 -2.0 -1.8 sigma-54 modulation protein compare
Atu0368 -2.0 -4.2 tRNA pseudouridine synthase I compare
Atu0399 -2.0 -5.1 dihydroorotase compare
Atu3634 -2.0 -4.4 penicillin-binding protein dacf precursor compare
Atu0043 -2.0 -2.8 imidazoleglycerol-phosphate dehydratase compare
Atu1904 -1.9 -3.2 transcriptional regulator compare
Atu0421 -1.9 -1.8 ABC transporter, membrane spanning protein compare
Atu0141 -1.9 -0.9 cytochrome O ubiquinol oxidase subunit I compare
Atu1470 -1.9 -1.2 Camphor resistance protein compare
Atu0679 -1.9 -5.6 ATP phosphoribosyltransferase compare
Atu1468 -1.9 -7.4 hypothetical protein compare
Atu0537 -1.9 -8.3 histidinol dehydrogenase compare
Atu0999 -1.9 -1.3 magnesium transport protein compare
Atu1364 -1.9 -3.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0189 -1.9 -0.9 ABC transporter, membrane spanning protein (peptide) compare
Atu3014 -1.8 -2.7 hypothetical protein compare
Atu1688 -1.8 -5.8 indole-3-glycerol-phosphate synthase compare
Atu0099 -1.8 -8.3 prephenate dehydratase compare
Atu1327 -1.8 -2.0 NADH-ubiquinone oxidoreductase compare
Atu1810 -1.8 -0.7 hypothetical protein compare
Atu2113 -1.7 -2.1 N-acetylmuramoyl-L-alanine amidase compare
Atu1647 -1.7 -4.2 ABC transporter, membrane spanning protein compare
Atu3183 -1.7 -1.0 hypothetical protein compare
Atu5115 -1.7 -1.9 hypothetical protein compare
Atu2036 -1.7 -9.0 acetolactate synthase III, large subunit compare
Atu2040 -1.7 -4.1 phosphoserine phosphatase compare
Atu0361 -1.7 -1.6 transcriptional regulator compare
Atu1131 -1.6 -4.8 outer membrane protein compare
Atu3727 -1.6 -3.3 hypothetical protein compare
Atu4205 -1.6 -5.5 TetR family transcriptional regulator compare
Atu2554 -1.6 -2.3 lysyl-tRNA synthetase compare
Atu0031 -1.6 -0.8 PTS system, IIA component compare
Atu2234 -1.5 -2.4 hypothetical protein compare
Atu1902 -1.5 -5.1 transketolase compare
Atu2685 -1.5 -10.5 aconitate hydratase compare
Atu1258 -1.5 -3.0 ATP-dependent Clp protease, proteolytic subunit compare
Atu0184 -1.5 -2.3 glucokinase compare
Atu0912 -1.5 -1.1 Na+/H+ antiporter compare
Atu0486 -1.5 -2.7 dihydroorotate dehydrogenase compare
Atu8195 -1.5 -2.5 hypothetical protein compare
Atu2791 -1.5 -6.7 3-isopropylmalate dehydrogenase compare
Atu2718 -1.5 -5.3 homoserine O-succinyltransferase compare
Atu0601 -1.4 -5.5 oxidoreductase compare
Atu1513 -1.4 -3.6 ABC excinuclease subunit A compare
Atu5125 -1.4 -3.1 GntR family transcriptional regulator compare
Atu0401 -1.4 -4.3 fructokinase compare
Atu3013 -1.4 -3.7 hypothetical protein compare
Atu1838 -1.4 -2.4 ABC transporter, substrate binding protein (amino acid) compare
Atu4887 -1.4 -6.7 hypothetical protein compare
Atu1354 -1.4 -0.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0837 -1.4 -5.7 transcriptional regulator, MarR family compare
Atu0419 -1.4 -2.3 two component sensor kinase compare
Atu0703 -1.4 -1.2 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu3219 -1.3 -7.3 dihydroxy-acid dehydratase compare
Atu8054 -1.3 -0.8 hypothetical protein compare
Atu2709 -1.3 -8.9 3-isopropylmalate dehydratase, large subunit compare
Atu1844 -1.3 -2.2 Phosphoribosylformylglycinamidine synthetase compare
Atu0269 -1.3 -2.9 exodeoxyribonuclease VII large subunit compare
Atu0062 -1.3 -5.3 transcriptional regulator, ROK family compare
Atu2073 -1.3 -2.6 membrane protein compare
Atu8118 -1.3 -4.5 putative universal stress protein compare
Atu3010 -1.3 -6.0 hypothetical protein compare
Atu3496 -1.2 -3.4 hypothetical protein compare
Atu0153 -1.2 -2.6 transcriptional regulator, Fur family compare
Atu5451 -1.2 -1.2 hypothetical protein compare
Atu8056 -1.2 -1.0 hypothetical protein compare
Atu0687 -1.2 -1.6 hypothetical protein compare
Atu1793 -1.2 -4.7 phosphatidylcholine synthase compare
Atu1175 -1.2 -1.1 hypothetical protein compare
Atu5142 -1.2 -2.4 hypothetical protein compare
Atu4884 -1.2 -4.7 hypothetical protein compare
Atu2052 -1.2 -2.3 hypothetical protein compare
Atu0400 -1.2 -2.4 orotate phosphoribosyltransferase compare
Atu0038 -1.2 -3.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1308 -1.2 -4.1 aspartate carbamoyl transferase catalytic subunit compare
Atu2790 -1.2 -1.8 3-isopropylmalate dehydratase, small subunit compare
Atu2439 -1.2 -0.5 hypothetical protein compare
Atu4892 -1.2 -7.9 hypothetical protein compare
Atu2730 -1.2 -7.7 beta (1-->2) glucan biosynthesis protein compare
Atu4477 -1.2 -4.7 TetR family transcriptional regulator compare
Atu4323 -1.2 -4.1 ribitol 2-dehydrogenase compare
Atu4890 -1.1 -2.0 IS426 transposase compare
Atu3739 -1.1 -1.8 phosphoglycerate kinase compare
Atu1619 -1.1 -1.2 protein-export membrane protein SECG compare
Atu0276 -1.1 -3.4 hypothetical protein compare
Atu2682 -1.1 -2.6 hypothetical protein compare
Atu3019 -1.1 -5.3 hypothetical protein compare
Atu2722 -1.1 -2.7 porin compare
Atu1254 -1.1 -1.4 transcriptional regulator, ArsR family compare
Atu3011 -1.1 -2.8 ArsR family transcriptional regulator compare
Atu4346 -1.1 -4.8 hypothetical protein compare
Atu3798 -1.1 -3.3 TetR family transcriptional regulator compare
Atu0638 -1.1 -1.6 hypothetical protein compare
Atu2616 -1.1 -1.3 hypothetical protein compare
Atu4514 -1.1 -2.6 RpiR family transcriptional regulator compare
Atu1469 -1.1 -1.9 hypothetical protein compare
Atu2155 -1.1 -7.4 methionine synthase compare
Atu8162 -1.1 -1.0 hypothetical protein compare
Atu0602 -1.1 -4.0 glutamine synthetase compare
Atu2464 -1.1 -1.6 formyltetrahydrofolate deformylase compare
Atu4893 -1.1 -4.0 hypothetical protein compare
Atu3006 -1.0 -3.9 hypothetical protein compare
Atu1677 -1.0 -2.4 queuine tRNA-ribosyltransferase compare
Atu2728 -1.0 -0.7 beta (1-->2) glucan export ATP-binding protein compare
Atu0923 -1.0 -4.0 hypothetical protein compare
Atu5106 -1.0 -2.0 DNA binding protein compare
Atu3750 -1.0 -2.1 thiamine-phosphate pyrophosphorylase compare
Atu8202 -1.0 -3.9 hypothetical protein compare
Atu4161 -1.0 -1.7 hypothetical protein compare
Atu8041 -1.0 -2.2 hypothetical protein compare
Atu4530 -1.0 -3.5 TetR family transcriptional regulator compare
Atu3963 -1.0 -3.6 GntR family transcriptional regulator compare
Atu1760 -1.0 -0.6 hypothetical protein compare
Atu5152 -1.0 -2.3 hypothetical protein compare
Atu3608 -1.0 -2.8 hypothetical protein compare
Atu0893 -1.0 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2824 -1.0 -1.9 hypothetical protein compare
Atu5468 -1.0 -1.9 hypothetical protein compare
Atu0272 -1.0 -2.1 transcriptional regulator, MarR family compare
Atu0769 -1.0 -0.7 protoheme IX farnesyltransferase compare
Atu2349 -1.0 -1.2 hypothetical protein compare
Atu4055 -1.0 -3.0 endo-1,3-1,4-beta-glycanase compare
Atu0976 -1.0 -1.9 cycL protein compare
Atu5123 -1.0 -7.2 acetolactate synthase catalytic subunit compare
Atu0432 -1.0 -4.3 O-succinylhomoserine sulfhydrylase compare
Atu2264 -1.0 -4.1 2-isopropylmalate synthase compare
Atu4171 -0.9 -4.2 cold-shock dead-box protein A compare
Atu3016 -0.9 -4.1 phosphoglyceromutase compare
Atu1052 -0.9 -2.5 hypothetical protein compare
Atu1307 -0.9 -2.2 dihydroorotase compare
Atu2267 -0.9 -3.6 hypothetical protein compare
Atu1803 -0.9 -2.0 cold shock protein compare
Atu2304 -0.9 -4.4 bacteroid development protein compare
Atu2207 -0.9 -2.2 two component sensor kinase compare
Atu0346 -0.9 -1.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0565 -0.9 -2.1 hypothetical protein compare
Atu2650 -0.9 -5.6 glycerol-3-phosphate dehydrogenase compare
Atu4144 -0.9 -0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms