Experiment set18S378 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu1359 -5.1 -1.3 dnaK deletion suppressor protein compare
Atu0026 -4.3 -1.1 hypothetical protein compare
Atu2522 -4.2 -9.2 agrobacterium chromosomal virulence protein B compare
Atu2183 -4.1 -9.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4711 -3.9 -7.0 two component sensor kinase compare
Atu1030 -3.9 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3908 -3.8 -11.0 GntR family transcriptional regulator compare
Atu2274 -3.6 -8.4 cation efflux system protein compare
Atu0040 -3.4 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0030 -3.4 -1.7 phosphocarrier protein HPr compare
Atu3598 -3.4 -1.4 thiol:disulfide interchange protein compare
Atu1468 -3.3 -10.3 hypothetical protein compare
Atu3706 -3.3 -8.7 D-3-phosphoglycerate dehydrogenase compare
Atu0537 -3.2 -8.2 histidinol dehydrogenase compare
Atu1446 -3.2 -2.2 two component response regulator compare
Atu0039 -3.2 -2.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu8095 -3.2 -5.9 hypothetical protein compare
Atu0050 -3.1 -2.1 two component response regulator compare
Atu2464 -3.0 -4.0 formyltetrahydrofolate deformylase compare
Atu0678 -2.9 -6.5 histidyl-tRNA synthetase compare
Atu1364 -2.9 -4.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu6098 -2.9 -1.2 transcriptional regulator, HTH family compare
Atu2289 -2.8 -12.3 anthranilate synthase component I and II compare
Atu2718 -2.7 -9.0 homoserine O-succinyltransferase compare
Atu0043 -2.7 -2.5 imidazoleglycerol-phosphate dehydratase compare
Atu1163 -2.7 -0.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0017 -2.7 -2.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1646 -2.7 -3.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu4617 -2.7 -6.0 dTDP-D-glucose-4,6-dehydratase compare
Atu4614 -2.7 -4.7 glycosyltransferase compare
Atu0978 -2.7 -4.4 two component response regulator compare
Atu1750 -2.7 -3.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu1470 -2.6 -1.2 Camphor resistance protein compare
Atu0041 -2.6 -1.8 glutamine amidotransferase compare
Atu0051 -2.6 -1.8 two component sensor kinase compare
Atu2040 -2.6 -5.7 phosphoserine phosphatase compare
Atu0153 -2.6 -5.3 transcriptional regulator, Fur family compare
Atu2073 -2.6 -3.1 membrane protein compare
Atu1874 -2.5 -2.4 RecA protein compare
Atu3353 -2.5 -5.5 mannose-1-phosphate guanylyltransferase compare
Atu3311 -2.5 -8.4 phosphomannose isomerase compare
Atu5115 -2.4 -2.0 hypothetical protein compare
Atu0331 -2.4 -1.6 sigma-54 modulation protein compare
Atu4166 -2.4 -2.8 UDP-glucose 4-epimerase compare
Atu1327 -2.4 -2.5 NADH-ubiquinone oxidoreductase compare
Atu3707 -2.4 -1.8 phosphoserine aminotransferase compare
Atu3730 -2.4 -1.3 hypothetical protein compare
Atu4317 -2.3 -2.2 TetR family transcriptional regulator compare
Atu0692 -2.3 -7.9 glutathione-regulated potassium-efflux system protein compare
Atu1647 -2.2 -5.5 ABC transporter, membrane spanning protein compare
Atu0784 -2.2 -2.3 hypothetical protein compare
Atu0269 -2.2 -4.3 exodeoxyribonuclease VII large subunit compare
Atu1688 -2.1 -5.4 indole-3-glycerol-phosphate synthase compare
Atu4616 -2.1 -1.2 dTDP-4-dehydrorhamnose reductase compare
Atu0298 -2.1 -4.6 orotidine 5 compare
Atu3739 -2.0 -2.7 phosphoglycerate kinase compare
Atu1417 -2.0 -6.4 enoyl-CoA hydratase compare
Atu0141 -2.0 -0.8 cytochrome O ubiquinol oxidase subunit I compare
Atu0062 -2.0 -8.6 transcriptional regulator, ROK family compare
Atu3510 -2.0 -3.4 amidohydrolase compare
Atu0099 -2.0 -7.2 prephenate dehydratase compare
Atu3732 -2.0 -8.2 hemolysin compare
Atu4618 -2.0 -4.7 dTDP-rhamnose-3,5-epimerase compare
Atu0769 -1.9 -1.0 protoheme IX farnesyltransferase compare
Atu0977 -1.9 -2.9 serine protease DO-like protease compare
Atu0101 -1.9 -4.6 cytochrome c compare
Atu1645 -1.9 -6.2 ABC transporter, substrate binding protein compare
Atu3744 -1.9 -9.6 ABC transporter permease compare
Atu1588 -1.9 -6.3 homoserine dehydrogenase compare
Atu0999 -1.9 -1.3 magnesium transport protein compare
Atu0703 -1.9 -1.9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1683 -1.9 -1.7 hypothetical protein compare
Atu0679 -1.8 -4.8 ATP phosphoribosyltransferase compare
Atu1242 -1.8 -8.8 cytochrome oxidase assembly factor compare
Atu1028 -1.8 -1.5 hypothetical protein compare
Atu1354 -1.8 -0.8 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1810 -1.8 -0.6 hypothetical protein compare
Atu4615 -1.8 -4.1 glucose-1-phosphate thymidylyltransferase compare
Atu4323 -1.8 -5.9 ribitol 2-dehydrogenase compare
Atu2831 -1.8 -3.5 glucose inhibited division protein A compare
Atu2521 -1.8 -9.5 Protein regulated by acid pH compare
Atu2041 -1.7 -1.8 acetyltransferase compare
Atu4613 -1.7 -4.9 glycosyltransferase compare
Atu0361 -1.7 -1.5 transcriptional regulator compare
Atu3613 -1.7 -4.8 hypothetical protein compare
Atu4773 -1.7 -0.8 two component response regulator compare
Atu1302 -1.7 -2.1 hypothetical protein compare
Atu1619 -1.7 -1.6 protein-export membrane protein SECG compare
Atu2684 -1.7 -2.0 hypothetical protein compare
Atu2036 -1.7 -8.2 acetolactate synthase III, large subunit compare
Atu1705 -1.6 -4.5 SEC-independent protein translocase protein compare
Atu3727 -1.6 -3.2 hypothetical protein compare
Atu2790 -1.6 -1.7 3-isopropylmalate dehydratase, small subunit compare
Atu0138 -1.6 -6.5 surfeit 1 compare
Atu1846 -1.6 -1.4 hypothetical protein compare
Atu0912 -1.6 -1.0 Na+/H+ antiporter compare
Atu0400 -1.6 -3.4 orotate phosphoribosyltransferase compare
Atu2379 -1.6 -4.5 phosphomannomutase compare
Atu3544 -1.5 -8.1 arsenical pump membrane protein compare
Atu0399 -1.5 -3.9 dihydroorotase compare
Atu0038 -1.5 -3.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4610 -1.5 -4.5 sugar nucleotide epimerase/dehydratase compare
Atu4232 -1.5 -6.0 GntR family transcriptional regulator compare
Atu5125 -1.5 -3.2 GntR family transcriptional regulator compare
Atu0601 -1.5 -5.7 oxidoreductase compare
Atu2155 -1.5 -9.4 methionine synthase compare
Atu3469 -1.5 -1.7 phosphoglyceromutase compare
Atu0979 -1.5 -4.9 two component sensor kinase compare
Atu1103 -1.5 -2.0 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2554 -1.5 -2.2 lysyl-tRNA synthetase compare
Atu0047 -1.4 -9.3 malate synthase G compare
Atu3885 -1.4 -6.6 inositol monophosphatase compare
Atu1225 -1.4 -1.4 hypothetical protein compare
Atu1838 -1.4 -2.3 ABC transporter, substrate binding protein (amino acid) compare
Atu1213 -1.4 -1.5 hypothetical protein compare
Atu1714 -1.4 -0.9 exonuclease III compare
Atu1902 -1.4 -4.6 transketolase compare
Atu0432 -1.4 -5.3 O-succinylhomoserine sulfhydrylase compare
Atu0925 -1.4 -2.6 hypothetical protein compare
Atu2057 -1.4 -1.5 DNA helicase II compare
Atu0368 -1.3 -2.8 tRNA pseudouridine synthase I compare
Atu2791 -1.3 -5.6 3-isopropylmalate dehydrogenase compare
Atu0602 -1.3 -5.3 glutamine synthetase compare
Atu1495 -1.3 -1.9 hypothetical protein compare
Atu1513 -1.3 -3.2 ABC excinuclease subunit A compare
Atu4609 -1.3 -5.2 glycosyltransferase compare
Atu0687 -1.3 -1.6 hypothetical protein compare
Atu1129 -1.3 -4.2 excinuclease ABC chain C compare
Atu1131 -1.3 -3.0 outer membrane protein compare
Atu1803 -1.3 -2.7 cold shock protein compare
Atu2709 -1.3 -7.3 3-isopropylmalate dehydratase, large subunit compare
Atu0184 -1.3 -2.5 glucokinase compare
Atu4502 -1.2 -3.8 cobalamin synthesis protein compare
Atu2113 -1.2 -2.2 N-acetylmuramoyl-L-alanine amidase compare
Atu2439 -1.2 -0.4 hypothetical protein compare
Atu8032 -1.2 -1.8 hypothetical protein compare
Atu8167 -1.2 -3.8 putative transmembrane protein compare
Atu3712 -1.2 -1.2 hypothetical protein compare
Atu8118 -1.2 -2.5 putative universal stress protein compare
Atu0319 -1.2 -1.0 ubiquinone biosynthesis protein compare
Atu0142 -1.2 -1.5 cytochrome o ubiquinol oxidase subunit II compare
Atu1219 -1.2 -0.7 hypothetical protein compare
Atu2163 -1.2 -1.0 hypothetical protein compare
Atu0401 -1.2 -4.8 fructokinase compare
Atu0923 -1.2 -2.8 hypothetical protein compare
Atu5470 -1.2 -1.4 hypothetical protein compare
Atu0768 -1.2 -6.2 cytochrome-c oxidase chain I compare
Atu0894 -1.2 -1.4 ABC transporter, membrane spanning protein compare
Atu1205 -1.1 -5.6 threonine dehydratase compare
Atu0920 -1.1 -2.7 hypothetical protein compare
Atu1904 -1.1 -2.4 transcriptional regulator compare
Atu2264 -1.1 -5.8 2-isopropylmalate synthase compare
Atu2125 -1.1 -0.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1644 -1.1 -1.7 hypothetical protein compare
Atu2800 -1.1 -2.0 precorrin-3B C17-methyltransferase compare
Atu0422 -1.1 -1.4 ABC transporter, membrane spanning protein compare
Atu1339 -1.1 -2.5 ribonuclease E compare
Atu1592 -1.1 -2.5 hypothetical protein compare
Atu4205 -1.1 -3.6 TetR family transcriptional regulator compare
Atu2728 -1.1 -0.7 beta (1-->2) glucan export ATP-binding protein compare
Atu2207 -1.1 -2.2 two component sensor kinase compare
Atu2832 -1.1 -2.3 tRNA modification GTPase compare
Atu1687 -1.1 -5.4 anthranilate phosphoribosyltransferase compare
Atu4099 -1.1 -3.8 hypothetical protein compare
Atu0976 -1.1 -1.3 cycL protein compare
Atu2462 -1.1 -1.4 hypothetical protein compare
Atu1291 -1.0 -1.6 hypothetical protein compare
Atu5430 -1.0 -0.9 hypothetical protein compare
Atu2722 -1.0 -2.8 porin compare
Atu0690 -1.0 -1.3 hypothetical protein compare
Atu8096 -1.0 -1.0 hypothetical protein compare
Atu1589 -1.0 -2.9 aminotransferase, class I compare
Atu1308 -1.0 -3.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0486 -1.0 -1.7 dihydroorotate dehydrogenase compare
Atu1847 -1.0 -1.5 hypothetical protein compare
Atu2710 -1.0 -1.8 hypothetical protein compare
Atu3219 -1.0 -6.1 dihydroxy-acid dehydratase compare
Atu1258 -1.0 -2.2 ATP-dependent Clp protease, proteolytic subunit compare
Atu0353 -1.0 -4.5 acetyltransferase compare
Atu4040 -1.0 -2.2 hypothetical protein compare
Atu2685 -1.0 -6.1 aconitate hydratase compare
Atu4055 -1.0 -3.5 endo-1,3-1,4-beta-glycanase compare
Atu0354 -1.0 -1.0 ferric uptake regulator compare
Atu3780 -1.0 -2.5 hypothetical protein compare
Atu1223 -1.0 -0.9 hypothetical protein compare
Atu2399 -1.0 -2.6 hypothetical protein compare
Atu0767 -1.0 -4.0 cytochrome c oxidase subunit II compare
Atu3634 -0.9 -1.8 penicillin-binding protein dacf precursor compare
Atu0322 -0.9 -3.3 enoyl CoA hydratase compare
Atu3628 -0.9 -3.6 hypothetical protein compare
Atu1355 -0.9 -5.0 hypothetical protein compare
Atu4446 -0.9 -4.1 hypothetical protein compare
Atu4677 -0.9 -0.8 hypothetical protein compare
Atu1679 -0.9 -1.5 peptidyl prolyl cis-trans isomerase compare
Atu1031 -0.9 -1.3 hypothetical protein compare
Atu0627 -0.9 -2.3 carboxymethylenebutenolidase compare
Atu2304 -0.9 -3.8 bacteroid development protein compare
Atu1307 -0.9 -2.6 dihydroorotase compare
Atu2824 -0.9 -1.9 hypothetical protein compare
Atu0029 -0.9 -2.8 S-adenosylhomocysteine hydrolase compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms