Experiment set18S376 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu4615 -5.8 -12.4 glucose-1-phosphate thymidylyltransferase compare
Atu2522 -5.7 -15.2 agrobacterium chromosomal virulence protein B compare
Atu2183 -5.6 -8.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4617 -5.6 -12.0 dTDP-D-glucose-4,6-dehydratase compare
Atu3353 -5.3 -13.4 mannose-1-phosphate guanylyltransferase compare
Atu6098 -5.1 -1.7 transcriptional regulator, HTH family compare
Atu4618 -5.1 -17.2 dTDP-rhamnose-3,5-epimerase compare
Atu4614 -5.0 -11.1 glycosyltransferase compare
Atu0978 -4.8 -3.3 two component response regulator compare
Atu2379 -4.8 -11.5 phosphomannomutase compare
Atu3311 -4.8 -13.6 phosphomannose isomerase compare
Atu4613 -4.7 -16.1 glycosyltransferase compare
Atu4616 -4.4 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu3544 -4.2 -11.3 arsenical pump membrane protein compare
Atu0039 -4.1 -2.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu0043 -4.1 -3.1 imidazoleglycerol-phosphate dehydratase compare
Atu1030 -4.0 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4711 -4.0 -9.3 two component sensor kinase compare
Atu0030 -3.9 -2.2 phosphocarrier protein HPr compare
Atu1359 -3.5 -1.6 dnaK deletion suppressor protein compare
Atu3598 -3.5 -1.9 thiol:disulfide interchange protein compare
Atu2521 -3.5 -16.1 Protein regulated by acid pH compare
Atu2073 -3.4 -4.1 membrane protein compare
Atu0331 -3.4 -2.3 sigma-54 modulation protein compare
Atu3908 -3.4 -13.2 GntR family transcriptional regulator compare
Atu3707 -3.4 -2.3 phosphoserine aminotransferase compare
Atu1417 -3.3 -7.8 enoyl-CoA hydratase compare
Atu1646 -3.2 -5.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu1364 -3.2 -5.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0050 -3.2 -2.2 two component response regulator compare
Atu1468 -3.0 -10.6 hypothetical protein compare
Atu0678 -3.0 -6.6 histidyl-tRNA synthetase compare
Atu2040 -2.9 -4.9 phosphoserine phosphatase compare
Atu1647 -2.9 -6.9 ABC transporter, membrane spanning protein compare
Atu0687 -2.8 -2.9 hypothetical protein compare
Atu1645 -2.8 -6.8 ABC transporter, substrate binding protein compare
Atu3706 -2.8 -8.9 D-3-phosphoglycerate dehydrogenase compare
Atu3727 -2.8 -6.1 hypothetical protein compare
Atu2289 -2.7 -11.8 anthranilate synthase component I and II compare
Atu0051 -2.7 -1.9 two component sensor kinase compare
Atu2831 -2.7 -5.3 glucose inhibited division protein A compare
Atu1163 -2.7 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4166 -2.7 -2.4 UDP-glucose 4-epimerase compare
Atu0038 -2.7 -4.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4610 -2.6 -9.4 sugar nucleotide epimerase/dehydratase compare
Atu1446 -2.6 -2.6 two component response regulator compare
Atu0894 -2.6 -2.5 ABC transporter, membrane spanning protein compare
Atu2274 -2.5 -8.1 cation efflux system protein compare
Atu4608 -2.5 -11.7 hypothetical protein compare
Atu2125 -2.5 -1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3732 -2.5 -10.6 hemolysin compare
Atu0979 -2.5 -7.2 two component sensor kinase compare
Atu0679 -2.5 -7.1 ATP phosphoribosyltransferase compare
Atu8095 -2.4 -6.9 hypothetical protein compare
Atu0537 -2.4 -8.0 histidinol dehydrogenase compare
Atu1242 -2.4 -9.4 cytochrome oxidase assembly factor compare
Atu0041 -2.4 -2.5 glutamine amidotransferase compare
Atu0040 -2.3 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3744 -2.3 -13.0 ABC transporter permease compare
Atu1750 -2.3 -3.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu1889 -2.3 -2.9 diacylglycerol kinase compare
Atu3469 -2.3 -2.5 phosphoglyceromutase compare
Atu4609 -2.2 -9.7 glycosyltransferase compare
Atu2684 -2.2 -2.7 hypothetical protein compare
Atu1327 -2.2 -2.6 NADH-ubiquinone oxidoreductase compare
Atu1588 -2.2 -7.3 homoserine dehydrogenase compare
Atu0692 -2.2 -8.2 glutathione-regulated potassium-efflux system protein compare
Atu0141 -2.1 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu2155 -2.1 -13.3 methionine synthase compare
Atu0769 -2.1 -1.3 protoheme IX farnesyltransferase compare
Atu0189 -2.1 -1.1 ABC transporter, membrane spanning protein (peptide) compare
Atu8087 -2.0 -1.1 putative peptidoglycan binding protein compare
Atu1760 -2.0 -1.1 hypothetical protein compare
Atu0999 -2.0 -1.4 magnesium transport protein compare
Atu1705 -1.9 -6.1 SEC-independent protein translocase protein compare
Atu0142 -1.9 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu0421 -1.9 -2.2 ABC transporter, membrane spanning protein compare
Atu0399 -1.9 -5.0 dihydroorotase compare
Atu3730 -1.9 -1.3 hypothetical protein compare
Atu1810 -1.9 -0.8 hypothetical protein compare
Atu0099 -1.9 -7.9 prephenate dehydratase compare
Atu1131 -1.9 -6.8 outer membrane protein compare
Atu1688 -1.9 -5.4 indole-3-glycerol-phosphate synthase compare
Atu0138 -1.9 -7.5 surfeit 1 compare
Atu0086 -1.9 -1.4 ribosome-binding factor A compare
Atu4053 -1.8 -1.7 succinoglycan biosynthesis protein compare
Atu1902 -1.8 -5.9 transketolase compare
Atu2052 -1.8 -2.4 hypothetical protein compare
Atu1644 -1.8 -2.4 hypothetical protein compare
Atu8167 -1.7 -8.2 putative transmembrane protein compare
Atu3613 -1.7 -5.3 hypothetical protein compare
Atu1077 -1.7 -2.9 DNA repair protein compare
Atu4232 -1.7 -6.5 GntR family transcriptional regulator compare
Atu8118 -1.7 -6.4 putative universal stress protein compare
Atu1062 -1.7 -1.9 phosphatidylserine synthase compare
Atu2464 -1.7 -3.4 formyltetrahydrofolate deformylase compare
Atu2832 -1.6 -3.0 tRNA modification GTPase compare
Atu2790 -1.6 -2.5 3-isopropylmalate dehydratase, small subunit compare
Atu0434 -1.6 -2.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2791 -1.6 -7.2 3-isopropylmalate dehydrogenase compare
Atu2722 -1.6 -5.6 porin compare
Atu1308 -1.6 -4.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0319 -1.6 -1.5 ubiquinone biosynthesis protein compare
Atu0876 -1.6 -1.4 superoxide dismutase compare
Atu2113 -1.6 -2.7 N-acetylmuramoyl-L-alanine amidase compare
Atu3634 -1.6 -2.6 penicillin-binding protein dacf precursor compare
Atu0298 -1.5 -6.0 orotidine 5 compare
Atu0340 -1.5 -2.1 SAM dependent methyltransferase compare
Atu3031 -1.5 -1.5 hypothetical protein compare
Atu0368 -1.5 -4.6 tRNA pseudouridine synthase I compare
Atu0601 -1.5 -6.9 oxidoreductase compare
Atu0047 -1.5 -8.9 malate synthase G compare
Atu3010 -1.5 -7.9 hypothetical protein compare
Atu0062 -1.5 -6.2 transcriptional regulator, ROK family compare
Atu4317 -1.5 -2.0 TetR family transcriptional regulator compare
Atu0153 -1.5 -3.6 transcriptional regulator, Fur family compare
Atu3486 -1.5 -2.3 DeoR family transcriptional regulator compare
Atu0767 -1.5 -5.6 cytochrome c oxidase subunit II compare
Atu1838 -1.4 -2.4 ABC transporter, substrate binding protein (amino acid) compare
Atu1687 -1.4 -6.0 anthranilate phosphoribosyltransferase compare
Atu8202 -1.4 -5.5 hypothetical protein compare
Atu4072 -1.4 -1.0 nodulation protein N compare
Atu5125 -1.4 -4.2 GntR family transcriptional regulator compare
Atu2036 -1.4 -8.3 acetolactate synthase III, large subunit compare
Atu4323 -1.4 -4.9 ribitol 2-dehydrogenase compare
Atu1570 -1.4 -1.0 hypothetical protein compare
Atu1354 -1.4 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3011 -1.4 -4.0 ArsR family transcriptional regulator compare
Atu2264 -1.4 -6.4 2-isopropylmalate synthase compare
Atu1175 -1.3 -1.4 hypothetical protein compare
Atu4888 -1.3 -4.7 hypothetical protein compare
Atu0486 -1.3 -3.1 dihydroorotate dehydrogenase compare
Atu2718 -1.3 -3.9 homoserine O-succinyltransferase compare
Atu3219 -1.3 -7.1 dihydroxy-acid dehydratase compare
Atu4893 -1.3 -4.9 hypothetical protein compare
Atu2439 -1.3 -0.6 hypothetical protein compare
Atu1967 -1.3 -4.2 hypothetical protein compare
Atu2615 -1.3 -1.2 hypothetical protein compare
Atu1254 -1.3 -1.8 transcriptional regulator, ArsR family compare
Atu0977 -1.3 -2.2 serine protease DO-like protease compare
Atu3013 -1.3 -3.8 hypothetical protein compare
Atu0837 -1.3 -5.7 transcriptional regulator, MarR family compare
Atu3963 -1.3 -5.1 GntR family transcriptional regulator compare
Atu0031 -1.3 -0.8 PTS system, IIA component compare
Atu2554 -1.3 -2.3 lysyl-tRNA synthetase compare
Atu4514 -1.3 -4.0 RpiR family transcriptional regulator compare
Atu0149 -1.3 -2.0 enoyl-(acyl-carrier-protein) reductase compare
Atu0749 -1.2 -3.0 biotin synthesis BioY protein compare
Atu4205 -1.2 -6.1 TetR family transcriptional regulator compare
Atu1513 -1.2 -3.6 ABC excinuclease subunit A compare
Atu4887 -1.2 -5.7 hypothetical protein compare
Atu0768 -1.2 -8.0 cytochrome-c oxidase chain I compare
Atu0269 -1.2 -3.2 exodeoxyribonuclease VII large subunit compare
Atu0602 -1.2 -6.3 glutamine synthetase compare
Atu0101 -1.2 -3.4 cytochrome c compare
Atu0784 -1.2 -2.0 hypothetical protein compare
Atu2728 -1.2 -0.8 beta (1-->2) glucan export ATP-binding protein compare
Atu0432 -1.2 -4.6 O-succinylhomoserine sulfhydrylase compare
Atu0029 -1.2 -3.8 S-adenosylhomocysteine hydrolase compare
Atu3608 -1.2 -4.1 hypothetical protein compare
Atu3006 -1.2 -4.5 hypothetical protein compare
Atu1307 -1.2 -3.7 dihydroorotase compare
Atu4892 -1.2 -8.0 hypothetical protein compare
Atu3018 -1.2 -4.2 hypothetical protein compare
Atu2685 -1.2 -8.0 aconitate hydratase compare
Atu3739 -1.1 -2.2 phosphoglycerate kinase compare
Atu5115 -1.1 -1.2 hypothetical protein compare
Atu1739 -1.1 -1.6 permease compare
Atu4685 -1.1 -5.0 LacI family transcriptional regulator compare
Atu0746 -1.1 -1.8 hypothetical protein compare
Atu0422 -1.1 -1.9 ABC transporter, membrane spanning protein compare
Atu0296 -1.1 -3.6 NADH-ubiquinone oxidoreductase compare
Atu0143 -1.1 -7.6 MFS permease compare
Atu4873 -1.1 -4.0 TetR family transcriptional regulator compare
Atu5123 -1.1 -7.6 acetolactate synthase catalytic subunit compare
Atu0590 -1.1 -5.2 transcriptional regulator repressor compare
Atu3162 -1.1 -5.4 LacI family transcriptional regulator compare
Atu2239 -1.1 -3.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu4173 -1.0 -2.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu2083 -1.0 -2.0 DNA repair protein RecN compare
Atu1028 -1.0 -1.5 hypothetical protein compare
Atu1005 -1.0 -2.3 hypothetical protein compare
Atu8018 -1.0 -0.8 hypothetical protein compare
Atu2200 -1.0 -1.9 cold shock protein compare
Atu4187 -1.0 -1.1 tRNA-Met compare
Atu1333 -1.0 -2.0 outer membrane protein compare
Atu0971 -1.0 -0.7 two component sensor kinase compare
Atu2041 -1.0 -1.3 acetyltransferase compare
Atu1874 -1.0 -1.7 RecA protein compare
Atu0703 -1.0 -2.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2057 -1.0 -1.2 DNA helicase II compare
Atu4446 -1.0 -6.2 hypothetical protein compare
Atu2207 -1.0 -2.6 two component sensor kinase compare
Atu4502 -1.0 -4.1 cobalamin synthesis protein compare
Atu1793 -1.0 -3.6 phosphatidylcholine synthase compare
Atu0188 -1.0 -0.6 ABC transporter, membrane spanning protein (peptide) compare
Atu2798 -1.0 -2.8 precorrin-6y methyltransferase compare
Atu0912 -1.0 -1.0 Na+/H+ antiporter compare
Atu8036 -1.0 -3.1 protein YBGT-like protein compare
Atu2616 -1.0 -1.7 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms