Experiment set18S366 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu6098 -5.2 -1.2 transcriptional regulator, HTH family compare
Atu2040 -5.1 -5.0 phosphoserine phosphatase compare
Atu4166 -5.0 -2.3 UDP-glucose 4-epimerase compare
Atu4614 -4.6 -9.3 glycosyltransferase compare
Atu4617 -4.6 -10.9 dTDP-D-glucose-4,6-dehydratase compare
Atu3353 -4.2 -10.6 mannose-1-phosphate guanylyltransferase compare
Atu3311 -4.1 -12.9 phosphomannose isomerase compare
Atu4616 -4.1 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu2289 -3.9 -14.7 anthranilate synthase component I and II compare
Atu1030 -3.9 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3706 -3.8 -8.6 D-3-phosphoglycerate dehydrogenase compare
Atu4711 -3.8 -7.2 two component sensor kinase compare
Atu0978 -3.7 -5.7 two component response regulator compare
Atu0537 -3.7 -8.2 histidinol dehydrogenase compare
Atu2183 -3.6 -8.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2464 -3.6 -3.1 formyltetrahydrofolate deformylase compare
Atu4613 -3.6 -12.2 glycosyltransferase compare
Atu4615 -3.5 -7.8 glucose-1-phosphate thymidylyltransferase compare
Atu0030 -3.5 -1.6 phosphocarrier protein HPr compare
Atu0912 -3.5 -1.1 Na+/H+ antiporter compare
Atu0040 -3.5 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0041 -3.4 -1.9 glutamine amidotransferase compare
Atu0678 -3.4 -5.7 histidyl-tRNA synthetase compare
Atu3598 -3.4 -1.3 thiol:disulfide interchange protein compare
Atu1468 -3.4 -9.8 hypothetical protein compare
Atu3908 -3.3 -8.8 GntR family transcriptional regulator compare
Atu1588 -3.3 -9.1 homoserine dehydrogenase compare
Atu2522 -3.2 -8.5 agrobacterium chromosomal virulence protein B compare
Atu8087 -3.2 -1.0 putative peptidoglycan binding protein compare
Atu4618 -3.2 -9.9 dTDP-rhamnose-3,5-epimerase compare
Atu0050 -3.1 -2.1 two component response regulator compare
Atu0043 -3.1 -2.9 imidazoleglycerol-phosphate dehydratase compare
Atu2379 -3.1 -8.5 phosphomannomutase compare
Atu1570 -3.1 -1.0 hypothetical protein compare
Atu1750 -3.0 -5.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu0017 -3.0 -3.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3744 -2.9 -13.8 ABC transporter permease compare
Atu2073 -2.9 -2.9 membrane protein compare
Atu1417 -2.8 -7.0 enoyl-CoA hydratase compare
Atu0331 -2.7 -2.0 sigma-54 modulation protein compare
Atu3469 -2.7 -2.0 phosphoglyceromutase compare
Atu0039 -2.7 -2.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu8095 -2.7 -7.6 hypothetical protein compare
Atu0099 -2.7 -10.7 prephenate dehydratase compare
Atu0051 -2.6 -1.8 two component sensor kinase compare
Atu1446 -2.6 -1.9 two component response regulator compare
Atu4317 -2.6 -2.0 TetR family transcriptional regulator compare
Atu1242 -2.6 -9.0 cytochrome oxidase assembly factor compare
Atu4773 -2.6 -0.8 two component response regulator compare
Atu0038 -2.6 -4.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1688 -2.6 -7.3 indole-3-glycerol-phosphate synthase compare
Atu1646 -2.5 -3.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1705 -2.4 -4.7 SEC-independent protein translocase protein compare
Atu1687 -2.4 -9.6 anthranilate phosphoribosyltransferase compare
Atu4072 -2.4 -1.2 nodulation protein N compare
Atu2036 -2.3 -11.3 acetolactate synthase III, large subunit compare
Atu2433 -2.3 -1.3 hypothetical protein compare
Atu4610 -2.3 -8.6 sugar nucleotide epimerase/dehydratase compare
Atu0784 -2.3 -2.2 hypothetical protein compare
Atu0138 -2.3 -7.7 surfeit 1 compare
Atu0679 -2.2 -5.2 ATP phosphoribosyltransferase compare
Atu1364 -2.2 -4.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0432 -2.2 -7.5 O-succinylhomoserine sulfhydrylase compare
Atu1647 -2.2 -5.1 ABC transporter, membrane spanning protein compare
Atu0692 -2.2 -10.0 glutathione-regulated potassium-efflux system protein compare
Atu0977 -2.2 -3.0 serine protease DO-like protease compare
Atu2684 -2.2 -2.0 hypothetical protein compare
Atu0142 -2.1 -0.9 cytochrome o ubiquinol oxidase subunit II compare
Atu1644 -2.1 -1.7 hypothetical protein compare
Atu2718 -2.1 -5.5 homoserine O-succinyltransferase compare
Atu2274 -2.1 -5.4 cation efflux system protein compare
Atu0399 -2.1 -3.7 dihydroorotase compare
Atu0767 -2.1 -4.8 cytochrome c oxidase subunit II compare
Atu0768 -2.1 -9.0 cytochrome-c oxidase chain I compare
Atu3739 -2.1 -2.9 phosphoglycerate kinase compare
Atu0141 -2.0 -0.8 cytochrome O ubiquinol oxidase subunit I compare
Atu0101 -2.0 -4.2 cytochrome c compare
Atu1874 -2.0 -2.1 RecA protein compare
Atu2264 -2.0 -8.9 2-isopropylmalate synthase compare
Atu2709 -2.0 -12.5 3-isopropylmalate dehydratase, large subunit compare
Atu0189 -1.9 -0.7 ABC transporter, membrane spanning protein (peptide) compare
Atu2831 -1.9 -3.4 glucose inhibited division protein A compare
Atu2057 -1.9 -1.5 DNA helicase II compare
Atu1205 -1.9 -9.7 threonine dehydratase compare
Atu3634 -1.9 -3.8 penicillin-binding protein dacf precursor compare
Atu1028 -1.9 -1.4 hypothetical protein compare
Atu8167 -1.9 -8.2 putative transmembrane protein compare
Atu0269 -1.9 -3.4 exodeoxyribonuclease VII large subunit compare
Atu0031 -1.9 -0.7 PTS system, IIA component compare
Atu0769 -1.9 -0.8 protoheme IX farnesyltransferase compare
Atu3727 -1.9 -4.2 hypothetical protein compare
Atu1327 -1.9 -1.8 NADH-ubiquinone oxidoreductase compare
Atu0601 -1.9 -8.4 oxidoreductase compare
Atu1810 -1.9 -0.6 hypothetical protein compare
Atu0953 -1.9 -1.0 hypothetical protein compare
Atu1513 -1.8 -4.2 ABC excinuclease subunit A compare
Atu0999 -1.8 -1.3 magnesium transport protein compare
Atu1439 -1.8 -1.4 hypothetical protein compare
Atu3707 -1.8 -1.5 phosphoserine aminotransferase compare
Atu0368 -1.8 -3.9 tRNA pseudouridine synthase I compare
Atu3732 -1.8 -9.0 hemolysin compare
Atu3613 -1.8 -4.4 hypothetical protein compare
Atu2207 -1.8 -2.6 two component sensor kinase compare
Atu1103 -1.7 -2.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0153 -1.7 -4.9 transcriptional regulator, Fur family compare
Atu0026 -1.7 -0.7 hypothetical protein compare
Atu3885 -1.7 -7.7 inositol monophosphatase compare
Atu8036 -1.6 -2.7 protein YBGT-like protein compare
Atu0421 -1.6 -1.4 ABC transporter, membrane spanning protein compare
Atu4609 -1.6 -5.6 glycosyltransferase compare
Atu2521 -1.6 -8.7 Protein regulated by acid pH compare
Atu0434 -1.6 -1.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2155 -1.6 -8.0 methionine synthase compare
Atu2832 -1.6 -2.9 tRNA modification GTPase compare
Atu0029 -1.5 -4.9 S-adenosylhomocysteine hydrolase compare
Atu2682 -1.5 -2.1 hypothetical protein compare
Atu2722 -1.5 -5.0 porin compare
Atu1359 -1.5 -0.9 dnaK deletion suppressor protein compare
Atu1803 -1.5 -3.1 cold shock protein compare
Atu2790 -1.5 -1.9 3-isopropylmalate dehydratase, small subunit compare
Atu2399 -1.5 -3.6 hypothetical protein compare
Atu1039 -1.5 -3.1 DNA repair protein RecO compare
Atu0979 -1.5 -4.3 two component sensor kinase compare
Atu2067 -1.5 -0.7 hypothetical protein compare
Atu4446 -1.5 -7.6 hypothetical protein compare
Atu3775 -1.4 -1.3 hypothetical protein compare
Atu0894 -1.4 -1.6 ABC transporter, membrane spanning protein compare
Atu3730 -1.4 -0.8 hypothetical protein compare
Atu4323 -1.4 -3.8 ribitol 2-dehydrogenase compare
Atu4608 -1.4 -5.1 hypothetical protein compare
Atu1308 -1.4 -4.2 aspartate carbamoyl transferase catalytic subunit compare
Atu0062 -1.4 -5.7 transcriptional regulator, ROK family compare
Atu4435 -1.4 -3.7 oligopeptide ABC transporter ATPase compare
Atu0093 -1.4 -2.6 Recombination protein compare
Atu5088 -1.4 -1.9 hypothetical protein compare
Atu2437 -1.4 -3.0 hypothetical protein compare
Atu1356 -1.4 -5.9 hypothetical protein compare
Atu0647 -1.4 -3.2 phosphoribosylamine--glycine ligase compare
Atu4205 -1.3 -4.9 TetR family transcriptional regulator compare
Atu0149 -1.3 -2.5 enoyl-(acyl-carrier-protein) reductase compare
Atu4232 -1.3 -4.6 GntR family transcriptional regulator compare
Atu2791 -1.3 -4.5 3-isopropylmalate dehydrogenase compare
Atu2803 -1.3 -2.7 Cobalamin biosynthesis associated protein compare
Atu2439 -1.3 -0.4 hypothetical protein compare
Atu1447 -1.3 -1.2 two component sensor kinase compare
Atu4514 -1.3 -3.2 RpiR family transcriptional regulator compare
Atu1739 -1.3 -2.0 permease compare
Atu5125 -1.2 -2.9 GntR family transcriptional regulator compare
Atu1354 -1.2 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0346 -1.2 -2.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3609 -1.2 -3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3219 -1.2 -7.2 dihydroxy-acid dehydratase compare
Atu0047 -1.2 -6.2 malate synthase G compare
Atu1581 -1.2 -1.0 hypothetical protein compare
Atu0502 -1.2 -4.0 acetyl-CoA acetyltransferase compare
Atu1902 -1.2 -3.8 transketolase compare
Atu3544 -1.2 -4.3 arsenical pump membrane protein compare
Atu0962 -1.2 -3.7 hypothetical protein compare
Atu1645 -1.1 -3.6 ABC transporter, substrate binding protein compare
Atu0703 -1.1 -1.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1589 -1.1 -3.9 aminotransferase, class I compare
Atu3759 -1.1 -1.0 hypothetical protein compare
Atu1683 -1.1 -1.2 hypothetical protein compare
Atu3008 -1.1 -0.5 hypothetical protein compare
Atu1099 -1.1 -2.9 hypothetical protein compare
Atu5496 -1.1 -5.0 TetR family transcriptional regulator compare
Atu0296 -1.1 -3.2 NADH-ubiquinone oxidoreductase compare
Atu2728 -1.1 -0.8 beta (1-->2) glucan export ATP-binding protein compare
Atu6131 -1.1 -3.4 TraR Antiactivator compare
Atu0036 -1.1 -1.0 hypothetical protein compare
Atu1677 -1.1 -1.6 queuine tRNA-ribosyltransferase compare
Atu2585 -1.1 -3.6 hypothetical protein compare
Atu1129 -1.1 -3.3 excinuclease ABC chain C compare
Atu1503 -1.1 -0.7 hypothetical protein compare
Atu1062 -1.1 -1.0 phosphatidylserine synthase compare
Atu2583 -1.1 -6.5 glycosyltransferase compare
Atu0143 -1.1 -5.4 MFS permease compare
Atu1163 -1.1 -0.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1286 -1.1 -2.3 hypothetical protein compare
Atu1023 -1.1 -1.2 hypothetical protein compare
Atu3517 -1.1 -2.1 acetyltransferase compare
Atu1836 -1.0 -1.2 hypothetical protein compare
Atu1141 -1.0 -2.3 Phosphoribosylglycinamide synthetase compare
Atu1077 -1.0 -1.7 DNA repair protein compare
Atu4502 -1.0 -3.3 cobalamin synthesis protein compare
Atu8138 -1.0 -0.6 hypothetical protein compare
Atu1204 -1.0 -3.0 potassium uptake protein compare
Atu3963 -1.0 -4.2 GntR family transcriptional regulator compare
Atu8184 -1.0 -2.7 hypothetical protein compare
Atu2248 -1.0 -1.7 hypothetical protein compare
Atu2770 -1.0 -3.6 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu0687 -1.0 -1.3 hypothetical protein compare
Atu3036 -1.0 -2.4 dipeptide ABC transporter permease compare
Atu3144 -1.0 -1.8 GntR family transcriptional regulator compare
Atu4092 -1.0 -5.3 cytochrome d oxidase subunit II compare
Atu1980 -1.0 -1.5 hypothetical protein compare
Atu3608 -1.0 -3.2 hypothetical protein compare
Atu8118 -1.0 -2.7 putative universal stress protein compare
Atu1685 -1.0 -0.7 hypothetical protein compare
Atu2344 -1.0 -1.5 lactoylglutathione lyase compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms