Experiment set18S353 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu2113 -7.2 -2.6 N-acetylmuramoyl-L-alanine amidase compare
Atu3732 -7.0 -4.8 hemolysin compare
Atu0038 -6.1 -3.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0030 -5.9 -1.1 phosphocarrier protein HPr compare
Atu2036 -5.3 -12.4 acetolactate synthase III, large subunit compare
Atu1327 -5.2 -1.3 NADH-ubiquinone oxidoreductase compare
Atu0537 -5.2 -6.5 histidinol dehydrogenase compare
Atu0876 -5.1 -1.6 superoxide dismutase compare
Atu1359 -5.1 -0.9 dnaK deletion suppressor protein compare
Atu2803 -5.0 -3.7 Cobalamin biosynthesis associated protein compare
Atu3712 -4.9 -1.5 hypothetical protein compare
Atu6098 -4.8 -0.9 transcriptional regulator, HTH family compare
Atu2270 -4.4 -1.1 ATP-dependent Clp protease, proteolytic subunit compare
Atu0043 -4.3 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu2040 -4.3 -3.9 phosphoserine phosphatase compare
Atu2831 -4.3 -3.3 glucose inhibited division protein A compare
Atu2832 -4.2 -2.0 tRNA modification GTPase compare
Atu3885 -4.2 -7.1 inositol monophosphatase compare
Atu1760 -4.1 -0.7 hypothetical protein compare
Atu5451 -4.1 -1.1 hypothetical protein compare
Atu1705 -4.1 -5.4 SEC-independent protein translocase protein compare
Atu4616 -4.1 -1.2 dTDP-4-dehydrorhamnose reductase compare
Atu1850 -4.0 -2.7 phosphoribosylformylglycinamidine synthetase II compare
Atu1103 -4.0 -1.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1588 -3.9 -6.8 homoserine dehydrogenase compare
Atu2799 -3.9 -4.0 precorrin-6x reductase compare
Atu4677 -3.9 -1.0 hypothetical protein compare
Atu0041 -3.9 -1.4 glutamine amidotransferase compare
Atu3908 -3.9 -9.0 GntR family transcriptional regulator compare
Atu1030 -3.8 -1.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2125 -3.7 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu3009 -3.6 -0.9 exopolysaccharide production protein compare
Atu3469 -3.6 -1.6 phosphoglyceromutase compare
Atu1470 -3.6 -0.9 Camphor resistance protein compare
Atu0039 -3.5 -1.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu2532 -3.5 -4.4 transcriptional regulator, MarR family compare
Atu0912 -3.4 -0.9 Na+/H+ antiporter compare
Atu1364 -3.4 -4.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4072 -3.3 -1.0 nodulation protein N compare
Atu1750 -3.2 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0659 -3.2 -4.9 NTP pyrophosphohydrolase, MutT family compare
Atu2746 -3.1 -3.5 hypothetical protein compare
Atu0040 -3.1 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0679 -3.1 -3.3 ATP phosphoribosyltransferase compare
Atu2685 -3.1 -8.9 aconitate hydratase compare
Atu0533 -3.1 -2.3 putative inhibitor of septum formation compare
Atu3598 -3.1 -0.9 thiol:disulfide interchange protein compare
Atu0692 -3.0 -8.3 glutathione-regulated potassium-efflux system protein compare
Atu0678 -3.0 -4.8 histidyl-tRNA synthetase compare
Atu2522 -3.0 -8.4 agrobacterium chromosomal virulence protein B compare
Atu2795 -3.0 -5.3 cobalamin biosynthetic protein compare
Atu2237 -3.0 -3.3 cytochrome c1 compare
Atu0978 -2.9 -4.4 two component response regulator compare
Atu1952 -2.9 -1.0 hypothetical protein compare
Atu3707 -2.9 -1.2 phosphoserine aminotransferase compare
Atu3017 -2.9 -1.2 phosphoglyceromutase compare
Atu1589 -2.8 -5.7 aminotransferase, class I compare
Atu1021 -2.8 -1.9 outer membrane protein compare
Atu2808 -2.7 -6.8 cobyric acid synthase compare
Atu3579 -2.7 -2.0 lactoylglutathione lyase compare
Atu1874 -2.7 -1.4 RecA protein compare
Atu1140 -2.7 -2.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0770 -2.6 -5.4 cytochrome C oxidase assembly protein compare
Atu1646 -2.6 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2801 -2.6 -2.6 precorrin-2 C20 methyltransferase compare
Atu0107 -2.5 -1.9 hypothetical protein compare
Atu1688 -2.5 -4.4 indole-3-glycerol-phosphate synthase compare
Atu0908 -2.5 -2.4 transcriptional regulator compare
Atu8012 -2.5 -1.2 hypothetical protein compare
Atu4077 -2.5 -6.1 glycogen branching protein compare
Atu0972 -2.5 -2.1 lipA protein compare
Atu8054 -2.4 -0.6 hypothetical protein compare
Atu4050 -2.4 -2.2 UTP-glucose-1-phosphate uridylyltransferase compare
Atu1687 -2.4 -5.2 anthranilate phosphoribosyltransferase compare
Atu1904 -2.4 -4.1 transcriptional regulator compare
Atu2800 -2.4 -2.3 precorrin-3B C17-methyltransferase compare
Atu2809 -2.3 -4.5 cobalamin biosynthesis protein compare
Atu2238 -2.3 -4.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0400 -2.2 -2.4 orotate phosphoribosyltransferase compare
Atu2267 -2.2 -5.5 hypothetical protein compare
Atu0050 -2.2 -2.3 two component response regulator compare
Atu0843 -2.2 -6.3 P type cation (metal) transporter, ATPase component compare
Atu2587 -2.2 -8.5 ABC transporter, substrate binding protein (oligopeptide) compare
Atu0602 -2.2 -5.8 glutamine synthetase compare
Atu0486 -2.2 -3.0 dihydroorotate dehydrogenase compare
Atu2578 -2.2 -2.3 cAMP-dependent protein kinase regulatory subunit compare
Atu4317 -2.1 -1.6 TetR family transcriptional regulator compare
Atu4686 -2.1 -1.9 hypothetical protein compare
Atu8138 -2.1 -0.9 hypothetical protein compare
Atu1077 -2.1 -2.4 DNA repair protein compare
Atu0354 -2.1 -0.9 ferric uptake regulator compare
Atu0101 -2.1 -3.3 cytochrome c compare
Atu1344 -2.1 -1.5 hypothetical protein compare
Atu4018 -2.0 -5.6 two component sensor kinase compare
Atu4053 -2.0 -1.1 succinoglycan biosynthesis protein compare
Atu0846 -2.0 -2.4 transcriptional regulator, MarR family compare
Atu0331 -2.0 -1.5 sigma-54 modulation protein compare
Atu2163 -2.0 -0.8 hypothetical protein compare
Atu0029 -2.0 -2.6 S-adenosylhomocysteine hydrolase compare
Atu2684 -2.0 -1.2 hypothetical protein compare
Atu2274 -2.0 -3.9 cation efflux system protein compare
Atu1308 -2.0 -3.3 aspartate carbamoyl transferase catalytic subunit compare
Atu2239 -1.9 -2.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1803 -1.9 -3.2 cold shock protein compare
Atu2797 -1.9 -1.6 cobalamin biosynthesis protein compare
Atu1286 -1.9 -2.3 hypothetical protein compare
Atu1754 -1.9 -1.3 hypothetical protein compare
Atu1620 -1.9 -5.9 triosephosphate isomerase compare
Atu3008 -1.9 -0.7 hypothetical protein compare
Atu8041 -1.9 -1.9 hypothetical protein compare
Atu3604 -1.9 -2.1 hypoxanthine phosphoribosyltransferase compare
Atu0767 -1.9 -4.4 cytochrome c oxidase subunit II compare
Atu3219 -1.9 -7.0 dihydroxy-acid dehydratase compare
Atu4019 -1.9 -4.4 two component response regulator compare
Atu0399 -1.9 -3.3 dihydroorotase compare
Atu4711 -1.9 -4.2 two component sensor kinase compare
Atu0501 -1.8 -6.1 acyl-CoA dehydrogenase compare
Atu0269 -1.8 -3.1 exodeoxyribonuclease VII large subunit compare
Atu2589 -1.8 -4.5 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu0211 -1.8 -5.3 hypothetical protein compare
Atu1205 -1.8 -6.6 threonine dehydratase compare
Atu0762 -1.8 -2.0 hypothetical protein compare
Atu8095 -1.8 -3.4 hypothetical protein compare
Atu1844 -1.8 -1.4 Phosphoribosylformylglycinamidine synthetase compare
Atu1902 -1.8 -3.0 transketolase compare
Atu8118 -1.8 -3.6 putative universal stress protein compare
Atu3012 -1.8 -1.3 hypothetical protein compare
Atu0999 -1.8 -1.2 magnesium transport protein compare
Atu2588 -1.8 -3.1 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu0368 -1.7 -3.3 tRNA pseudouridine synthase I compare
Atu1810 -1.7 -0.4 hypothetical protein compare
Atu1739 -1.7 -1.6 permease compare
Atu3727 -1.7 -1.5 hypothetical protein compare
Atu1546 -1.7 -3.8 transcriptional regulator, MerR family compare
Atu2083 -1.7 -2.0 DNA repair protein RecN compare
Atu0503 -1.7 -6.3 enoyl-CoA hydratase compare
Atu0051 -1.7 -2.5 two component sensor kinase compare
Atu0769 -1.7 -0.6 protoheme IX farnesyltransferase compare
Atu0025 -1.7 -1.4 hypothetical protein compare
Atu8018 -1.7 -0.6 hypothetical protein compare
Atu0322 -1.7 -2.3 enoyl CoA hydratase compare
Atu3519 -1.7 -3.4 peptidyl-prolyl cis-trans isomerase compare
Atu3018 -1.7 -3.8 hypothetical protein compare
Atu4887 -1.7 -3.4 hypothetical protein compare
Atu1793 -1.7 -3.2 phosphatidylcholine synthase compare
Atu2289 -1.7 -6.6 anthranilate synthase component I and II compare
Atu3011 -1.7 -3.1 ArsR family transcriptional regulator compare
Atu3471 -1.7 -6.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
Atu0017 -1.6 -1.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu8087 -1.6 -0.7 putative peptidoglycan binding protein compare
Atu3706 -1.6 -3.0 D-3-phosphoglycerate dehydrogenase compare
Atu3755 -1.6 -2.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2718 -1.6 -4.5 homoserine O-succinyltransferase compare
Atu1074 -1.6 -5.3 NAD/NADP dependent oxidoreductase compare
Atu3750 -1.6 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu4173 -1.6 -1.4 phosphoenolpyruvate-protein phosphotransferase compare
Atu3505 -1.6 -4.1 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1689 -1.6 -2.1 molybdenum cofactor biosynthesis protein C compare
Atu2790 -1.6 -1.2 3-isopropylmalate dehydratase, small subunit compare
Atu2617 -1.6 -1.8 chemotaxis protein compare
Atu3013 -1.6 -3.3 hypothetical protein compare
Atu0771 -1.6 -3.4 cytochrome c oxidase subunit III compare
Atu0099 -1.6 -3.7 prephenate dehydratase compare
Atu1503 -1.6 -0.7 hypothetical protein compare
Atu2207 -1.6 -1.8 two component sensor kinase compare
Atu3010 -1.5 -4.9 hypothetical protein compare
Atu2464 -1.5 -2.0 formyltetrahydrofolate deformylase compare
Atu8096 -1.5 -1.0 hypothetical protein compare
Atu3465 -1.5 -2.4 metallo-beta-lactamase superfamily protein compare
Atu0888 -1.5 -2.1 transcriptional regulator, MerR family compare
Atu2802 -1.5 -2.3 precorrin-8X methylmutase compare
Atu8093 -1.5 -4.2 hypothetical protein compare
Atu1126 -1.5 -3.3 molybdopterin converting factor, large subunit compare
Atu4873 -1.5 -2.4 TetR family transcriptional regulator compare
Atu2650 -1.5 -4.4 glycerol-3-phosphate dehydrogenase compare
Atu0502 -1.5 -2.4 acetyl-CoA acetyltransferase compare
Atu1354 -1.5 -0.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0189 -1.5 -0.4 ABC transporter, membrane spanning protein (peptide) compare
Atu1695 -1.5 -3.6 molybdenum cofactor biosynthesis protein A compare
Atu3472 -1.5 -1.9 2-oxoisovalerate dehydrogenase subunit beta compare
Atu0777 -1.5 -0.4 hypothetical protein compare
Atu0062 -1.5 -4.7 transcriptional regulator, ROK family compare
Atu3478 -1.5 -3.5 3-methylcrotonoyl-CoA carboxylase beta subunit compare
Atu1542 -1.5 -3.1 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1683 -1.5 -0.8 hypothetical protein compare
Atu0074 -1.4 -3.9 molybdopterin biosynthesis protein compare
Atu1062 -1.4 -0.9 phosphatidylserine synthase compare
Atu2694 -1.4 -1.6 hypothetical protein compare
Atu3754 -1.4 -2.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4685 -1.4 -3.6 LacI family transcriptional regulator compare
Atu1508 -1.4 -2.7 hypothetical protein compare
Atu0768 -1.4 -4.6 cytochrome-c oxidase chain I compare
Atu1647 -1.4 -3.3 ABC transporter, membrane spanning protein compare
Atu4792 -1.4 -1.2 hypothetical protein compare
Atu3014 -1.4 -1.6 hypothetical protein compare
Atu0647 -1.4 -3.6 phosphoribosylamine--glycine ligase compare
Atu1007 -1.4 -2.2 hypothetical protein compare
Atu0031 -1.4 -0.4 PTS system, IIA component compare
Atu2057 -1.4 -0.9 DNA helicase II compare
Atu0251 -1.4 -4.8 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct across organisms