Experiment set18S353 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

Group: in planta
Media: + Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Culturing: Agro_ML11b
By: Mitchell Thompson on 6/16/23

Specific Phenotypes

For 10 genes in this experiment

For in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct across organisms

SEED Subsystems

Subsystem #Specific
Biogenesis of cytochrome c oxidases 1
Glycogen metabolism 1
Isoleucine degradation 1
Leucine Degradation and HMG-CoA Metabolism 1
Lipid A modifications 1
Orphan regulatory proteins 1
Propionyl-CoA to Succinyl-CoA Module 1
Serine-glyoxylate cycle 1
Trehalose Biosynthesis 1
Valine degradation 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
2-oxoisovalerate decarboxylation to isobutanoyl-CoA 3 3 1
propanoyl CoA degradation I 3 3 1
conversion of succinate to propanoate 3 1 1
glycogen biosynthesis I (from ADP-D-Glucose) 4 4 1
2-oxobutanoate degradation I 4 3 1
glycogen biosynthesis II (from UDP-D-Glucose) 4 1 1
starch biosynthesis 10 6 2
pyruvate fermentation to propanoate I 7 4 1
glycogen biosynthesis III (from α-maltose 1-phosphate) 8 2 1
anaerobic energy metabolism (invertebrates, mitochondrial) 10 8 1
L-glutamate degradation VIII (to propanoate) 11 4 1
3-hydroxypropanoate cycle 13 8 1
(S)-lactate fermentation to propanoate, acetate and hydrogen 13 5 1
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered) 14 3 1
superpathway of L-methionine salvage and degradation 16 8 1
superpathway of anaerobic energy metabolism (invertebrates) 17 13 1
3-hydroxypropanoate/4-hydroxybutanate cycle 18 11 1
superpathway of the 3-hydroxypropanoate cycle 18 8 1
methylaspartate cycle 19 12 1