Experiment set18S350 for Agrobacterium fabrum C58

Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

Group: in planta
Media: + Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Culturing: Agro_ML11b
By: Mitchell Thompson on 6/16/23

Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct across organisms

SEED Subsystems

Subsystem	#Specific
Molybdenum cofactor biosynthesis	2
Cobalamin synthesis	1
Coenzyme B12 biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Benzoate degradation via hydroxylation
• Fluorobenzoate degradation
• Benzoate degradation via CoA ligation
• Porphyrin and chlorophyll metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
aminopropanol phosphate biosynthesis I	2	1	1
benzoate degradation I (aerobic)	2	1	1
proline betaine degradation I	3	2	1
tRNA-uridine 2-thiolation (thermophilic bacteria)	5	2	1
meta cleavage pathway of aromatic compounds	10	4	1
toluene degradation IV (aerobic) (via catechol)	13	5	1
superpathway of L-threonine metabolism	18	11	1
mandelate degradation to acetyl-CoA	18	8	1
superpathway of aerobic toluene degradation	30	12	1
adenosylcobalamin biosynthesis II (aerobic)	33	29	1
superpathway of aromatic compound degradation via 3-oxoadipate	35	15	1
adenosylcobalamin biosynthesis I (anaerobic)	36	26	1
superpathway of aromatic compound degradation via 2-hydroxypentadienoate	42	11	1