Experiment set18S348 for Agrobacterium fabrum C58

Compare to:

Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu3732 -6.5 -8.9 hemolysin compare
Atu2036 -6.2 -9.5 acetolactate synthase III, large subunit compare
Atu2274 -5.9 -8.0 cation efflux system protein compare
Atu0030 -5.7 -1.1 phosphocarrier protein HPr compare
Atu0038 -5.4 -3.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu6098 -4.8 -0.9 transcriptional regulator, HTH family compare
Atu1359 -4.7 -0.9 dnaK deletion suppressor protein compare
Atu0537 -4.6 -6.7 histidinol dehydrogenase compare
Atu3908 -4.4 -13.9 GntR family transcriptional regulator compare
Atu2040 -4.4 -3.7 phosphoserine phosphatase compare
Atu1750 -4.3 -3.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0125 -4.2 -6.0 peptide methionine sulfoxide reductase compare
Atu0043 -4.1 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu2832 -4.0 -2.0 tRNA modification GTPase compare
Atu0908 -3.9 -3.3 transcriptional regulator compare
Atu1021 -3.9 -2.2 outer membrane protein compare
Atu1588 -3.8 -7.1 homoserine dehydrogenase compare
Atu0679 -3.7 -5.9 ATP phosphoribosyltransferase compare
Atu0031 -3.6 -0.7 PTS system, IIA component compare
Atu0041 -3.6 -1.4 glutamine amidotransferase compare
Atu4317 -3.6 -1.9 TetR family transcriptional regulator compare
Atu1967 -3.6 -4.6 hypothetical protein compare
Atu2831 -3.5 -3.5 glucose inhibited division protein A compare
Atu1030 -3.4 -1.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0876 -3.4 -1.4 superoxide dismutase compare
Atu2239 -3.3 -2.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2554 -3.3 -1.7 lysyl-tRNA synthetase compare
Atu0039 -3.3 -1.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu3885 -3.2 -6.6 inositol monophosphatase compare
Atu0784 -3.1 -1.7 hypothetical protein compare
Atu4773 -3.0 -0.8 two component response regulator compare
Atu1339 -3.0 -2.1 ribonuclease E compare
Atu3706 -3.0 -4.1 D-3-phosphoglycerate dehydrogenase compare
Atu1219 -3.0 -0.8 hypothetical protein compare
Atu2801 -3.0 -3.0 precorrin-2 C20 methyltransferase compare
Atu0040 -3.0 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2685 -3.0 -9.2 aconitate hydratase compare
Atu1688 -3.0 -6.9 indole-3-glycerol-phosphate synthase compare
Atu0029 -2.9 -4.5 S-adenosylhomocysteine hydrolase compare
Atu0692 -2.9 -5.6 glutathione-regulated potassium-efflux system protein compare
Atu0251 -2.9 -9.9 hypothetical protein compare
Atu0678 -2.9 -3.8 histidyl-tRNA synthetase compare
Atu0843 -2.8 -12.2 P type cation (metal) transporter, ATPase component compare
Atu0502 -2.8 -6.6 acetyl-CoA acetyltransferase compare
Atu3598 -2.8 -0.9 thiol:disulfide interchange protein compare
Atu2464 -2.8 -2.7 formyltetrahydrofolate deformylase compare
Atu0601 -2.7 -8.6 oxidoreductase compare
Atu1838 -2.7 -1.6 ABC transporter, substrate binding protein (amino acid) compare
Atu2684 -2.7 -0.8 hypothetical protein compare
Atu1620 -2.7 -8.7 triosephosphate isomerase compare
Atu3707 -2.7 -1.1 phosphoserine aminotransferase compare
Atu2578 -2.6 -5.1 cAMP-dependent protein kinase regulatory subunit compare
Atu1354 -2.6 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2803 -2.5 -3.4 Cobalamin biosynthesis associated protein compare
Atu1364 -2.5 -2.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1205 -2.5 -9.6 threonine dehydratase compare
Atu0368 -2.4 -4.5 tRNA pseudouridine synthase I compare
Atu2589 -2.4 -6.0 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu2113 -2.4 -1.8 N-acetylmuramoyl-L-alanine amidase compare
Atu4540 -2.3 -2.2 protocatechuate 3,4-dioxygenase subunit beta compare
Atu0768 -2.3 -8.0 cytochrome-c oxidase chain I compare
Atu1687 -2.3 -5.6 anthranilate phosphoribosyltransferase compare
Atu4205 -2.3 -6.5 TetR family transcriptional regulator compare
Atu0912 -2.3 -0.9 Na+/H+ antiporter compare
Atu0645 -2.3 -0.6 hypothetical protein compare
Atu3008 -2.3 -0.7 hypothetical protein compare
Atu1874 -2.2 -1.2 RecA protein compare
Atu1225 -2.2 -1.2 hypothetical protein compare
Atu3468 -2.2 -0.6 hypothetical protein compare
Atu2522 -2.2 -8.8 agrobacterium chromosomal virulence protein B compare
Atu2793 -2.1 -4.7 cobyrinic acid a,c-diamide synthase compare
Atu3466 -2.1 -1.9 ArsR family transcriptional regulator compare
Atu0331 -2.1 -1.6 sigma-54 modulation protein compare
Atu0602 -2.1 -5.8 glutamine synthetase compare
Atu1589 -2.1 -6.0 aminotransferase, class I compare
Atu1739 -2.1 -2.1 permease compare
Atu1286 -2.0 -2.0 hypothetical protein compare
Atu4514 -2.0 -4.2 RpiR family transcriptional regulator compare
Atu2588 -2.0 -4.3 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu1705 -2.0 -4.4 SEC-independent protein translocase protein compare
Atu1904 -2.0 -3.6 transcriptional regulator compare
Atu1902 -2.0 -4.2 transketolase compare
Atu0269 -2.0 -2.9 exodeoxyribonuclease VII large subunit compare
Atu1103 -1.9 -1.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0422 -1.9 -1.5 ABC transporter, membrane spanning protein compare
Atu0211 -1.9 -6.2 hypothetical protein compare
Atu0770 -1.9 -5.1 cytochrome C oxidase assembly protein compare
Atu8095 -1.9 -3.9 hypothetical protein compare
Atu1446 -1.9 -1.3 two component response regulator compare
Atu3012 -1.9 -1.6 hypothetical protein compare
Atu4173 -1.9 -1.5 phosphoenolpyruvate-protein phosphotransferase compare
Atu8191 -1.9 -0.7 hypothetical protein compare
Atu1175 -1.9 -0.9 hypothetical protein compare
Atu0972 -1.9 -1.8 lipA protein compare
Atu4616 -1.9 -0.8 dTDP-4-dehydrorhamnose reductase compare
Atu2587 -1.8 -8.9 ABC transporter, substrate binding protein (oligopeptide) compare
Atu0017 -1.8 -2.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0225 -1.8 -0.6 hypothetical protein compare
Atu4685 -1.8 -4.7 LacI family transcriptional regulator compare
Atu0501 -1.8 -6.9 acyl-CoA dehydrogenase compare
Atu3739 -1.8 -1.9 phosphoglycerate kinase compare
Atu3730 -1.8 -0.8 hypothetical protein compare
Atu4896 -1.8 -1.7 acetyltransferase compare
Atu3219 -1.8 -8.4 dihydroxy-acid dehydratase compare
Atu1417 -1.8 -4.7 enoyl-CoA hydratase compare
Atu0101 -1.8 -2.0 cytochrome c compare
Atu1513 -1.8 -3.2 ABC excinuclease subunit A compare
Atu3579 -1.8 -2.3 lactoylglutathione lyase compare
Atu1252 -1.8 -2.2 hypothetical protein compare
Atu0421 -1.7 -1.0 ABC transporter, membrane spanning protein compare
Atu0767 -1.7 -2.6 cytochrome c oxidase subunit II compare
Atu0893 -1.7 -3.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2209 -1.7 -2.3 pyrroline-5-carboxylate reductase compare
Atu2555 -1.7 -2.4 L-lysine 2,3-aminomutase compare
Atu2204 -1.7 -1.6 hypothetical protein compare
Atu6131 -1.7 -3.1 TraR Antiactivator compare
Atu0726 -1.6 -6.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu1327 -1.6 -1.3 NADH-ubiquinone oxidoreductase compare
Atu2795 -1.6 -3.8 cobalamin biosynthetic protein compare
Atu0978 -1.6 -3.0 two component response regulator compare
Atu5540 -1.6 -0.7 hypothetical protein compare
Atu1495 -1.6 -2.5 hypothetical protein compare
Atu2808 -1.6 -3.5 cobyric acid synthase compare
Atu5164 -1.6 -0.7 type IV secretion protein AvhB3 compare
Atu2238 -1.6 -2.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2586 -1.6 -6.7 ABC transporter, nucleotide binding/ATPase protein (oligopeptide) compare
Atu4040 -1.6 -2.3 hypothetical protein compare
Atu2796 -1.6 -4.1 precorrin-4 C11-methyltransferase compare
Atu2115 -1.6 -4.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1581 -1.6 -0.8 hypothetical protein compare
Atu4711 -1.6 -2.9 two component sensor kinase compare
Atu1182 -1.5 -1.2 hypothetical protein compare
Atu1689 -1.5 -2.3 molybdenum cofactor biosynthesis protein C compare
Atu2237 -1.5 -2.4 cytochrome c1 compare
Atu0322 -1.5 -2.6 enoyl CoA hydratase compare
Atu2484 -1.5 -0.9 hypothetical protein compare
Atu0846 -1.5 -2.9 transcriptional regulator, MarR family compare
Atu0659 -1.5 -3.5 NTP pyrophosphohydrolase, MutT family compare
Atu2267 -1.5 -4.5 hypothetical protein compare
Atu1028 -1.5 -1.0 hypothetical protein compare
Atu0771 -1.5 -4.0 cytochrome c oxidase subunit III compare
Atu3517 -1.4 -2.7 acetyltransferase compare
Atu5125 -1.4 -2.6 GntR family transcriptional regulator compare
Atu0503 -1.4 -5.9 enoyl-CoA hydratase compare
Atu1810 -1.4 -0.4 hypothetical protein compare
Atu3392 -1.4 -1.5 methyltransferase compare
Atu6009 -1.4 -3.8 indole-3-lactate synthase compare
Atu1242 -1.4 -4.2 cytochrome oxidase assembly factor compare
Atu3603 -1.4 -1.1 two component response regulator compare
Atu1646 -1.4 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu3009 -1.4 -0.7 exopolysaccharide production protein compare
Atu0999 -1.4 -1.0 magnesium transport protein compare
Atu3018 -1.4 -3.5 hypothetical protein compare
Atu0205 -1.4 -6.4 methylmalonate-semialdehyde dehydrogenase compare
Atu0045 -1.4 -4.5 heat shock chaperone compare
Atu2349 -1.4 -0.9 hypothetical protein compare
Atu4187 -1.4 -0.7 tRNA-Met compare
Atu1039 -1.4 -2.2 DNA repair protein RecO compare
Atu2306 -1.4 -4.4 methionine aminopeptidase compare
Atu3473 -1.3 -4.1 2-oxoisovalerate dehydrogenase subunit alpha compare
Atu8056 -1.3 -0.6 hypothetical protein compare
Atu0769 -1.3 -0.5 protoheme IX farnesyltransferase compare
Atu0836 -1.3 -1.4 Glutathione-S-transferase compare
Atu5160 -1.3 -1.7 transcriptional regulator protein compare
Atu0141 -1.3 -0.4 cytochrome O ubiquinol oxidase subunit I compare
Atu1748 -1.3 -4.1 NIFU-like protein compare
Atu4077 -1.3 -4.0 glycogen branching protein compare
Atu5471 -1.3 -2.6 hypothetical protein compare
Atu2163 -1.3 -0.7 hypothetical protein compare
Atu1127 -1.3 -1.4 molybdopterin converting factor small subunit compare
Atu1803 -1.3 -2.1 cold shock protein compare
Atu0210 -1.3 -3.8 hypothetical protein compare
Atu2798 -1.3 -2.7 precorrin-6y methyltransferase compare
Atu2807 -1.3 -2.7 cob(I)alamin adenosyltransferase compare
Atu0201 -1.3 -1.1 hypothetical protein compare
Atu1919 -1.3 -3.5 hypothetical protein compare
Atu0976 -1.3 -1.6 cycL protein compare
Atu0099 -1.3 -6.2 prephenate dehydratase compare
Atu3280 -1.3 -4.0 GntR family transcriptional regulator compare
Atu0189 -1.3 -0.4 ABC transporter, membrane spanning protein (peptide) compare
Atu2289 -1.3 -6.5 anthranilate synthase component I and II compare
Atu0062 -1.3 -4.0 transcriptional regulator, ROK family compare
Atu4873 -1.3 -2.6 TetR family transcriptional regulator compare
Atu4530 -1.2 -3.3 TetR family transcriptional regulator compare
Atu1850 -1.2 -1.5 phosphoribosylformylglycinamidine synthetase II compare
Atu2057 -1.2 -0.9 DNA helicase II compare
Atu3727 -1.2 -2.2 hypothetical protein compare
Atu0361 -1.2 -0.9 transcriptional regulator compare
Atu0400 -1.2 -1.6 orotate phosphoribosyltransferase compare
Atu2127 -1.2 -3.5 L-carnitine dehydratase compare
Atu0044 -1.2 -2.9 heat shock protein hslV compare
Atu0486 -1.2 -1.8 dihydroorotate dehydrogenase compare
Atu2747 -1.2 -4.7 hypothetical protein compare
Atu0883 -1.2 -1.7 hypothetical protein compare
Atu0611 -1.2 -2.5 ABC transporter, membrane spanning protein compare
Atu1690 -1.2 -3.3 molybdopterin biosynthesis protein compare
Atu2433 -1.2 -0.6 hypothetical protein compare
Atu3755 -1.2 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2264 -1.2 -6.1 2-isopropylmalate synthase compare
Atu2114 -1.2 -3.0 molecular chaperone, DnaJ family compare


Specific Phenotypes

For 11 genes in this experiment

For in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct across organisms