Experiment set18S338 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu1750 -6.5 -3.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0038 -5.7 -3.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0030 -5.6 -1.0 phosphocarrier protein HPr compare
Atu0679 -5.5 -4.8 ATP phosphoribosyltransferase compare
Atu0678 -5.3 -3.0 histidyl-tRNA synthetase compare
Atu0908 -5.3 -3.4 transcriptional regulator compare
Atu1327 -4.9 -1.2 NADH-ubiquinone oxidoreductase compare
Atu1503 -4.8 -0.8 hypothetical protein compare
Atu1359 -4.8 -0.8 dnaK deletion suppressor protein compare
Atu6098 -4.6 -0.8 transcriptional regulator, HTH family compare
Atu0876 -4.5 -1.4 superoxide dismutase compare
Atu0537 -4.5 -7.2 histidinol dehydrogenase compare
Atu3885 -4.5 -7.2 inositol monophosphatase compare
Atu3008 -4.4 -0.8 hypothetical protein compare
Atu2036 -4.3 -10.5 acetolactate synthase III, large subunit compare
Atu3908 -4.2 -9.1 GntR family transcriptional regulator compare
Atu2040 -4.1 -3.0 phosphoserine phosphatase compare
Atu0925 -4.1 -1.6 hypothetical protein compare
Atu6189 -4.0 -1.0 protein secretion chaperone compare
Atu1182 -3.9 -1.5 hypothetical protein compare
Atu2113 -3.9 -2.0 N-acetylmuramoyl-L-alanine amidase compare
Atu1103 -3.9 -1.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0043 -3.9 -1.5 imidazoleglycerol-phosphate dehydratase compare
Atu1705 -3.8 -4.0 SEC-independent protein translocase protein compare
Atu1687 -3.8 -7.0 anthranilate phosphoribosyltransferase compare
Atu0659 -3.8 -5.1 NTP pyrophosphohydrolase, MutT family compare
Atu0601 -3.8 -9.7 oxidoreductase compare
Atu3732 -3.8 -9.2 hemolysin compare
Atu0533 -3.7 -2.0 putative inhibitor of septum formation compare
Atu1967 -3.7 -5.2 hypothetical protein compare
Atu0641 -3.7 -1.8 hypothetical protein compare
Atu1588 -3.7 -7.2 homoserine dehydrogenase compare
Atu0434 -3.6 -1.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0031 -3.5 -0.6 PTS system, IIA component compare
Atu0041 -3.4 -1.2 glutamine amidotransferase compare
Atu1446 -3.4 -1.2 two component response regulator compare
Atu3706 -3.4 -6.2 D-3-phosphoglycerate dehydrogenase compare
Atu0486 -3.3 -2.7 dihydroorotate dehydrogenase compare
Atu0125 -3.2 -4.6 peptide methionine sulfoxide reductase compare
Atu4540 -3.2 -2.6 protocatechuate 3,4-dioxygenase subunit beta compare
Atu8023 -3.2 -1.1 hypothetical protein compare
Atu1836 -3.2 -1.5 hypothetical protein compare
Atu0544 -3.2 -1.6 hypothetical protein compare
Atu2464 -3.1 -1.7 formyltetrahydrofolate deformylase compare
Atu1030 -3.1 -0.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4407 -3.1 -2.1 periplasmic nitrate reductase, NapD protein compare
Atu0039 -3.1 -1.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu3467 -3.0 -1.4 hypothetical protein compare
Atu0767 -2.9 -3.7 cytochrome c oxidase subunit II compare
Atu0101 -2.9 -2.6 cytochrome c compare
Atu4882 -2.9 -2.2 hypothetical protein compare
Atu2802 -2.9 -4.2 precorrin-8X methylmutase compare
Atu0692 -2.9 -7.8 glutathione-regulated potassium-efflux system protein compare
Atu0040 -2.9 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0295 -2.8 -1.8 hypothetical protein compare
Atu4072 -2.8 -0.9 nodulation protein N compare
Atu8094 -2.8 -2.3 hypothetical protein compare
Atu4897 -2.8 -1.3 hypothetical protein compare
Atu0399 -2.8 -2.8 dihydroorotase compare
Atu1205 -2.8 -9.7 threonine dehydratase compare
Atu1688 -2.8 -5.5 indole-3-glycerol-phosphate synthase compare
Atu5160 -2.7 -1.9 transcriptional regulator protein compare
Atu2432 -2.7 -1.7 hypothetical protein compare
Atu2831 -2.7 -2.7 glucose inhibited division protein A compare
Atu0086 -2.7 -0.7 ribosome-binding factor A compare
Atu1308 -2.6 -3.8 aspartate carbamoyl transferase catalytic subunit compare
Atu3517 -2.6 -3.6 acetyltransferase compare
Atu4514 -2.6 -4.1 RpiR family transcriptional regulator compare
Atu1701 -2.6 -1.3 protein-L-isoaspartate O-methyltransferase compare
Atu1140 -2.6 -3.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3730 -2.6 -0.8 hypothetical protein compare
Atu3598 -2.5 -0.8 thiol:disulfide interchange protein compare
Atu1127 -2.5 -1.7 molybdopterin converting factor small subunit compare
Atu2684 -2.5 -0.7 hypothetical protein compare
Atu3392 -2.5 -2.4 methyltransferase compare
Atu4173 -2.5 -1.4 phosphoenolpyruvate-protein phosphotransferase compare
Atu0843 -2.5 -10.0 P type cation (metal) transporter, ATPase component compare
Atu0606 -2.4 -1.6 hypothetical protein compare
Atu1213 -2.4 -1.3 hypothetical protein compare
Atu1163 -2.4 -0.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0422 -2.4 -1.6 ABC transporter, membrane spanning protein compare
Atu3707 -2.4 -0.9 phosphoserine aminotransferase compare
Atu3780 -2.4 -3.4 hypothetical protein compare
Atu2274 -2.4 -4.7 cation efflux system protein compare
Atu1589 -2.4 -4.1 aminotransferase, class I compare
Atu3634 -2.3 -3.1 penicillin-binding protein dacf precursor compare
Atu8095 -2.3 -4.0 hypothetical protein compare
Atu3663 -2.3 -0.9 hypothetical protein compare
Atu2662 -2.2 -0.6 acetyltransferase compare
Atu3712 -2.2 -0.9 hypothetical protein compare
Atu2685 -2.2 -8.1 aconitate hydratase compare
Atu1470 -2.2 -0.8 Camphor resistance protein compare
Atu1223 -2.2 -0.9 hypothetical protein compare
Atu1232 -2.2 -1.7 hypothetical protein compare
Atu4317 -2.2 -1.4 TetR family transcriptional regulator compare
Atu2238 -2.2 -3.3 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0099 -2.2 -6.9 prephenate dehydratase compare
Atu4711 -2.1 -2.5 two component sensor kinase compare
Atu0888 -2.1 -3.6 transcriptional regulator, MerR family compare
Atu2239 -2.1 -1.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0029 -2.1 -2.2 S-adenosylhomocysteine hydrolase compare
Atu1847 -2.1 -1.3 hypothetical protein compare
Atu2273 -2.1 -2.9 hypothetical protein compare
Atu2790 -2.1 -1.2 3-isopropylmalate dehydratase, small subunit compare
Atu1028 -2.1 -0.9 hypothetical protein compare
Atu0602 -2.1 -4.5 glutamine synthetase compare
Atu0184 -2.1 -1.8 glucokinase compare
Atu1475 -2.1 -1.6 hypothetical protein compare
Atu3481 -2.1 -3.7 enoyl-CoA hydratase compare
Atu6131 -2.0 -1.7 TraR Antiactivator compare
Atu0768 -2.0 -5.8 cytochrome-c oxidase chain I compare
Atu0322 -2.0 -3.3 enoyl CoA hydratase compare
Atu2140 -2.0 -1.8 hypothetical protein compare
Atu2554 -2.0 -1.5 lysyl-tRNA synthetase compare
Atu2793 -2.0 -2.9 cobyrinic acid a,c-diamide synthase compare
Atu0502 -2.0 -4.0 acetyl-CoA acetyltransferase compare
Atu3095 -2.0 -2.2 hypothetical protein compare
Atu4502 -1.9 -3.6 cobalamin synthesis protein compare
Atu0479 -1.9 -3.9 ABC transporter, substrate binding protein (amino acid) compare
Atu1066 -1.9 -3.5 hypothetical protein compare
Atu2205 -1.9 -2.1 transcriptional regulator, MarR family compare
Atu0400 -1.9 -1.9 orotate phosphoribosyltransferase compare
Atu3757 -1.9 -1.6 hypothetical protein compare
Atu3759 -1.9 -0.8 hypothetical protein compare
Atu1748 -1.9 -3.5 NIFU-like protein compare
Atu1126 -1.9 -2.9 molybdopterin converting factor, large subunit compare
Atu2798 -1.9 -1.7 precorrin-6y methyltransferase compare
Atu1853 -1.8 -1.9 hypothetical protein compare
Atu4018 -1.8 -4.9 two component sensor kinase compare
Atu1779 -1.8 -0.9 hypothetical protein compare
Atu0017 -1.8 -1.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2433 -1.8 -0.7 hypothetical protein compare
Atu3009 -1.8 -0.7 exopolysaccharide production protein compare
Atu1286 -1.8 -2.5 hypothetical protein compare
Atu1077 -1.8 -2.0 DNA repair protein compare
Atu2478 -1.8 -2.1 hypothetical protein compare
Atu0953 -1.8 -0.6 hypothetical protein compare
Atu1307 -1.8 -2.4 dihydroorotase compare
Atu4040 -1.8 -1.5 hypothetical protein compare
Atu0201 -1.8 -1.1 hypothetical protein compare
Atu0894 -1.8 -1.1 ABC transporter, membrane spanning protein compare
Atu1695 -1.8 -5.9 molybdenum cofactor biosynthesis protein A compare
Atu2289 -1.8 -6.8 anthranilate synthase component I and II compare
Atu2626 -1.8 -3.3 hypothetical protein compare
Atu1849 -1.8 -2.8 hypothetical protein compare
Atu1175 -1.8 -0.7 hypothetical protein compare
Atu1620 -1.7 -5.3 triosephosphate isomerase compare
Atu0401 -1.7 -2.4 fructokinase compare
Atu0269 -1.7 -2.3 exodeoxyribonuclease VII large subunit compare
Atu4889 -1.7 -3.5 hypothetical protein compare
Atu0205 -1.7 -5.7 methylmalonate-semialdehyde dehydrogenase compare
Atu2588 -1.7 -3.1 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu0105 -1.7 -1.8 hypothetical protein compare
Atu0846 -1.7 -2.4 transcriptional regulator, MarR family compare
Atu0771 -1.7 -2.8 cytochrome c oxidase subunit III compare
Atu2522 -1.7 -4.6 agrobacterium chromosomal virulence protein B compare
Atu3183 -1.7 -0.5 hypothetical protein compare
Atu0893 -1.7 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu2800 -1.7 -1.8 precorrin-3B C17-methyltransferase compare
Atu8138 -1.7 -0.7 hypothetical protein compare
Atu2796 -1.7 -2.3 precorrin-4 C11-methyltransferase compare
Atu1354 -1.7 -0.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1581 -1.7 -0.9 hypothetical protein compare
Atu3575 -1.7 -2.9 xylose ABC transporter permease compare
Atu3013 -1.6 -2.5 hypothetical protein compare
Atu2808 -1.6 -3.4 cobyric acid synthase compare
Atu1685 -1.6 -0.6 hypothetical protein compare
Atu2306 -1.6 -2.8 methionine aminopeptidase compare
Atu3727 -1.6 -1.9 hypothetical protein compare
Atu2801 -1.6 -2.3 precorrin-2 C20 methyltransferase compare
Atu1850 -1.6 -1.8 phosphoribosylformylglycinamidine synthetase II compare
Atu3018 -1.6 -3.2 hypothetical protein compare
Atu5540 -1.6 -0.6 hypothetical protein compare
Atu3604 -1.6 -1.7 hypoxanthine phosphoribosyltransferase compare
Atu2795 -1.6 -3.3 cobalamin biosynthetic protein compare
Atu1570 -1.6 -0.5 hypothetical protein compare
Atu0344 -1.6 -1.9 hypothetical protein compare
Atu1690 -1.6 -2.9 molybdopterin biosynthesis protein compare
Atu1971 -1.6 -1.8 hypothetical protein compare
Atu3219 -1.6 -7.0 dihydroxy-acid dehydratase compare
Atu2747 -1.6 -4.0 hypothetical protein compare
Atu0251 -1.6 -4.3 hypothetical protein compare
Atu3505 -1.5 -3.1 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1177 -1.5 -2.1 hypothetical protein compare
Atu1793 -1.5 -2.7 phosphatidylcholine synthase compare
Atu2183 -1.5 -4.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4019 -1.5 -3.6 two component response regulator compare
Atu0786 -1.5 -2.7 peptidase, family M16 compare
Atu1364 -1.5 -2.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1904 -1.5 -1.6 transcriptional regulator compare
Atu4205 -1.5 -3.4 TetR family transcriptional regulator compare
Atu3014 -1.5 -1.1 hypothetical protein compare
Atu4112 -1.5 -3.9 proline dipeptidase compare
Atu0357 -1.5 -5.1 phosphate starvation inducible protein compare
Atu0119 -1.5 -0.6 hypothetical protein compare
Atu1422 -1.5 -4.6 transcriptional regulator, MarR family compare
Atu8053 -1.5 -1.6 hypothetical protein compare
Atu3270 -1.5 -1.8 hypothetical protein compare
Atu1810 -1.5 -0.4 hypothetical protein compare
Atu2709 -1.5 -7.3 3-isopropylmalate dehydratase, large subunit compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct across organisms