Experiment set18S338 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

200 most detrimental genes:

  gene name fitness t score description  
Atu6165 +3.0 1.6 hypothetical protein compare
Atu1737 +2.7 1.2 hypothetical protein compare
Atu0225 +2.1 1.7 hypothetical protein compare
Atu1511 +2.1 4.5 hypothetical protein compare
Atu0785 +1.9 3.0 ribosomal-protein (S5)-alanine N-acetyltransferase compare
Atu0381 +1.8 2.4 hypothetical protein compare
Atu1062 +1.8 2.5 phosphatidylserine synthase compare
Atu0413 +1.8 2.1 stress induced protein compare
Atu0427 +1.8 2.0 hypothetical protein compare
Atu5427 +1.7 2.1 hypothetical protein compare
Atu2017 +1.7 1.1 hypothetical protein compare
Atu4527 +1.7 1.7 hypothetical protein compare
Atu4616 +1.6 1.3 dTDP-4-dehydrorhamnose reductase compare
Atu4144 +1.6 1.3 hypothetical protein compare
Atu2381 +1.5 1.8 hypothetical protein compare
Atu1777 +1.5 2.7 hypothetical protein compare
Atu4605 +1.5 1.7 IS3 family transposase compare
Atu0297 +1.5 1.2 hypothetical protein compare
Atu0572 +1.4 0.8 hypothetical protein compare
Atu3100 +1.4 1.5 sugar ABC transporter permease compare
Atu0886 +1.4 1.0 hypothetical protein compare
Atu0795 +1.4 1.1 hypothetical protein compare
Atu1254 +1.3 1.8 transcriptional regulator, ArsR family compare
Atu1727 +1.3 1.4 hypothetical protein compare
Atu3668 +1.3 1.4 siderophore biosynthesis protein compare
Atu0917 +1.3 2.0 hypothetical protein compare
Atu0809 +1.3 1.5 hypothetical protein compare
Atu8162 +1.3 0.8 hypothetical protein compare
Atu3258 +1.3 2.3 hypothetical protein compare
Atu5163 +1.3 1.7 type IV secretion protein AvhB2 compare
Atu3171 +1.3 1.9 sugar ABC transporter ATPase compare
Atu8088 +1.3 1.3 hypothetical protein compare
Atu5157 +1.2 2.8 hypothetical protein compare
Atu4406 +1.2 1.6 periplasmic nitrate reductase, ferredoxin-like protein compare
Atu2176 +1.1 2.3 hypothetical protein compare
Atu3085 +1.1 2.7 hydantoin racemase compare
Atu8012 +1.1 1.4 hypothetical protein compare
Atu4779 +1.1 1.4 hypothetical protein compare
Atu0904 +1.1 1.2 hypothetical protein compare
Atu5162 +1.1 2.9 type IV secretion protein AvhB1 compare
Atu1137 +1.1 2.1 NTP pyrophosphohydrolase, MutT family compare
Atu3289 +1.1 1.6 thiamine-phosphate pyrophosphorylase compare
Atu3614 +1.1 4.2 glyoxalase II compare
Atu3632 +1.1 4.0 hypothetical protein compare
Atu1009 +1.1 1.6 hypothetical protein compare
Atu2249 +1.1 0.8 hypothetical protein compare
Atu1098 +1.1 1.5 hypothetical protein compare
Atu4524 +1.1 2.2 oligopeptide ABC transporter permease compare
Atu2732 +1.1 2.5 hippurate hydrolase compare
Atu5043 +1.0 2.0 hypothetical protein compare
Atu0477 +1.0 1.5 hypothetical protein compare
Atu8187 +1.0 1.9 hypothetical protein compare
Atu6054 +1.0 2.1 conserved hypothetical protein compare
Atu4757 +1.0 1.9 Xaa-Pro dipeptidase compare
Atu3148 +1.0 2.2 sugar ABC transporter ATPase compare
Atu3494 +1.0 1.9 hypothetical protein compare
Atu3432 +1.0 1.2 desulfurizing enzyme compare
Atu4428 +1.0 2.8 amidohydrolase compare
Atu5455 +1.0 1.7 hypothetical protein compare
Atu2163 +1.0 0.9 hypothetical protein compare
Atu0142 +1.0 1.4 cytochrome o ubiquinol oxidase subunit II compare
Atu2124 +1.0 2.3 transcriptional regulator, ArsR family compare
Atu1679 +1.0 1.3 peptidyl prolyl cis-trans isomerase compare
Atu1640 +1.0 2.3 hypothetical protein compare
Atu3098 +1.0 2.6 sn-glycerol-3-phosphate ABC transporter membrane protein compare
Atu8176 +1.0 1.1 hypothetical protein compare
Atu8032 +1.0 1.4 hypothetical protein compare
Atu5115 +0.9 1.1 hypothetical protein compare
Atu3507 +0.9 2.3 hypothetical protein compare
Atu8177 +0.9 1.5 hypothetical protein compare
Atu0941 +0.9 0.6 hypothetical protein compare
Atu5121 +0.9 4.1 two component response regulator compare
Atu3052 +0.9 1.7 MarR family transcriptional regulator compare
Atu0743 +0.9 2.0 hypothetical protein compare
Atu2410 +0.9 1.8 ABC transporter, nucleotide binding/ATPase protein (urea/amide) compare
Atu5166 +0.9 1.8 type IV secretion protein AvhB5 compare
Atu3644 +0.9 1.8 hypothetical protein compare
Atu0638 +0.9 0.6 hypothetical protein compare
Atu1626 +0.9 2.2 NAD dependent epimerase/dehydratase family protein compare
Atu3391 +0.9 2.5 ABC transporter substrate-binding protein compare
Atu1649 +0.9 1.7 hypothetical protein compare
Atu1629 +0.9 0.8 transcriptional regulator, ArsR family compare
Atu1078 +0.9 0.9 hypothetical protein compare
Atu5159 +0.9 2.2 hypothetical protein compare
Atu2335 +0.9 1.0 hypothetical protein compare
Atu5489 +0.9 1.4 hypothetical protein compare
Atu8056 +0.9 0.7 hypothetical protein compare
Atu2757 +0.9 1.8 nitrogen regulatory protein PII compare
Atu1968 +0.9 1.0 hypothetical protein compare
Atu0036 +0.9 0.9 hypothetical protein compare
Atu1184 +0.9 1.0 hypothetical protein compare
Atu5130 +0.9 1.3 attachment protein compare
Atu1573 +0.9 0.7 hypothetical protein compare
Atu0792 +0.9 1.3 hypothetical protein compare
Atu1916 +0.9 1.9 hypothetical protein compare
Atu4030 +0.9 3.2 sugar ABC transporter permease compare
Atu1846 +0.9 0.9 hypothetical protein compare
Atu0223 +0.9 2.1 components of type IV pilus, prepilin peptidase compare
Atu2028 +0.9 1.2 transcriptional regulator, ArsR family compare
Atu3126 +0.9 1.9 hypothetical protein compare
Atu4252 +0.9 2.5 sugar ABC transporter substrate-binding protein compare
Atu4235 +0.9 2.8 amino acid ABC transporter ATPase/permease compare
Atu0847 +0.9 1.3 organic hydroperoxide resistance protein compare
Atu1905 +0.9 2.4 short chain dehydrogenase compare
Atu2665 +0.9 1.8 transcriptional regulator, MarR family compare
Atu3545 +0.9 1.2 hypothetical protein compare
Atu3054 +0.9 3.1 hypothetical protein compare
Atu3073 +0.9 1.6 aspartate racemase compare
Atu3080 +0.9 2.7 hypothetical protein compare
Atu0662 +0.9 1.5 transcriptional regulator, GntR family compare
Atu0959 +0.8 2.8 hypothetical protein compare
Atu0997 +0.8 2.8 hypothetical protein compare
Atu2080 +0.8 3.3 acetyltransferase compare
Atu2380 +0.8 1.3 hypothetical protein compare
Atu2351 +0.8 0.9 hypothetical protein compare
Atu2694 +0.8 1.0 hypothetical protein compare
Atu0230 +0.8 1.0 hypothetical protein compare
Atu3926 +0.8 1.6 translation initiation inhibitor compare
Atu8033 +0.8 1.5 hypothetical protein compare
Atu0885 +0.8 1.0 hypothetical protein compare
Atu8180 +0.8 2.1 hypothetical protein compare
Atu0996 +0.8 1.6 zinc-binding dehydrogenase compare
Atu2584 +0.8 2.3 hypothetical protein compare
Atu2221 +0.8 1.0 Lipid A biosynthesis protein compare
Atu2322 +0.8 2.4 hypothetical protein compare
Atu0354 +0.8 0.8 ferric uptake regulator compare
Atu5462 +0.8 1.3 ABC transporter nucleotide binding/ATPase compare
Atu2600 +0.8 2.5 ABC transporter, nucleotide binding/ATPase protein (maltose/maltodextrin) compare
Atu0197 +0.8 2.1 ABC transporter, nucleotide binding/ATPase protein (proline/glycine/betaine) compare
Atu8156 +0.8 2.4 hypothetical protein compare
Atu1038 +0.8 1.6 two component response regulator compare
Atu4161 +0.8 1.0 hypothetical protein compare
Atu3808 +0.8 1.4 LysR family transcriptional regulator compare
Atu8120 +0.8 1.0 hypothetical protein compare
Atu5095 +0.8 2.6 hypothetical protein compare
Atu3031 +0.8 0.7 hypothetical protein compare
Atu1227 +0.8 0.9 hypothetical protein compare
Atu4669 +0.8 2.2 hypothetical protein compare
Atu3012 +0.8 0.7 hypothetical protein compare
Atu4035 +0.8 2.1 two component response regulator compare
Atu4366 +0.8 1.4 short chain dehydrogenase compare
Atu5513 +0.8 0.8 cold shock protein compare
Atu4806 +0.8 3.5 glycosyltransferase compare
Atu3835 +0.8 2.2 hypothetical protein compare
Atu1501 +0.8 1.6 hypothetical protein compare
Atu3960 +0.8 2.4 dihydrodipicolinate synthase compare
Atu1522 +0.8 3.1 transcriptional regulator, LacI family compare
Atu2277 +0.8 3.3 adenylate cyclase protein compare
Atu3345 +0.8 1.1 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu1896 +0.8 1.6 hypothetical protein compare
Atu0592 +0.8 1.8 ABC transporter, membrane spanning protein compare
Atu3537 +0.8 1.4 hypothetical protein compare
Atu6157 +0.8 2.6 conserved hypothetical protein compare
Atu1301 +0.8 1.4 hypothetical protein compare
Atu2376 +0.8 0.5 hypothetical protein compare
Atu4168 +0.7 1.4 hypothetical protein compare
Atu5494 +0.7 1.9 hypothetical protein compare
Atu4234 +0.7 1.7 amino acid ABC transporter permease compare
Atu4697 +0.7 1.3 oligopeptide ABC transporter permease compare
Atu2367 +0.7 2.2 hypothetical protein compare
Atu3677 +0.7 2.5 polyketide synthase compare
Atu0515 +0.7 2.1 hypothetical protein compare
Atu1557 +0.7 2.3 alcohol dehydrogenase compare
Atu0365 +0.7 2.3 hypothetical protein compare
Atu5164 +0.7 0.5 type IV secretion protein AvhB3 compare
Atu3193 +0.7 1.4 MarR family transcriptional regulator compare
Atu0812 +0.7 0.7 hypothetical protein compare
Atu4634 +0.7 1.5 hypothetical protein compare
Atu3324 +0.7 1.3 hypothetical protein compare
Atu4292 +0.7 2.2 chloramphenicol resistance protein compare
Atu2162 +0.7 1.3 periplasmic immunogenic protein compare
Atu0890 +0.7 2.7 hypothetical protein compare
Atu1439 +0.7 0.5 hypothetical protein compare
Atu0280 +0.7 0.7 hypothetical protein compare
Atu2733 +0.7 1.1 hypothetical protein compare
Atu2270 +0.7 0.8 ATP-dependent Clp protease, proteolytic subunit compare
Atu2526 +0.7 1.4 hypothetical protein compare
Atu8082 +0.7 0.8 hypothetical protein compare
Atu1346 +0.7 2.0 phenazine antibiotic biosynthesis related protein compare
Atu0133 +0.7 2.2 thymidine phosphorylase compare
Atu3627 +0.7 1.1 hypothetical protein compare
Atu3443 +0.7 1.1 hypothetical protein compare
Atu0849 +0.7 2.2 hypothetical protein compare
Atu1799 +0.7 2.6 hypothetical protein compare
Atu3802 +0.7 2.8 proline/glycine betaine ABC transporter ATPase compare
Atu8164 +0.7 2.3 hypothetical protein compare
Atu3565 +0.7 2.4 hypothetical protein compare
Atu4229 +0.7 1.9 glutamate synthase large subunit compare
Atu4266 +0.7 2.6 GntR family transcriptional regulator compare
Atu4201 +0.7 2.0 flavodoxin, WrbA-like protein compare
Atu3048 +0.7 2.1 oligopeptide ABC transporter permease compare
Atu2605 +0.7 1.1 hypothetical protein compare
Atu1206 +0.7 1.2 hypothetical protein compare
Atu0393 +0.7 2.0 ABC transporter, membrane spanning protein compare
Atu8191 +0.7 0.6 hypothetical protein compare
Atu2591 +0.7 2.8 glucosyltransferase compare
Atu1663 +0.7 2.1 amidohydrolase compare
Atu4492 +0.7 1.3 hypothetical protein compare
Atu4487 +0.7 1.3 ABC transporter permease compare
Atu8019 +0.7 1.2 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct across organisms