Experiment set18S312 for Agrobacterium fabrum C58

Compare to:

LB_Sorghum F72 F505

200 most important genes:

  gene name fitness t score description  
Atu0030 -3.7 -2.5 phosphocarrier protein HPr compare
Atu8095 -3.2 -9.0 hypothetical protein compare
Atu2073 -3.1 -4.2 membrane protein compare
Atu1354 -3.1 -1.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2125 -3.1 -1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0051 -2.5 -2.4 two component sensor kinase compare
Atu0692 -2.3 -12.5 glutathione-regulated potassium-efflux system protein compare
Atu4317 -2.2 -2.7 TetR family transcriptional regulator compare
Atu0050 -2.2 -2.9 two component response regulator compare
Atu0769 -2.1 -1.4 protoheme IX farnesyltransferase compare
Atu0912 -2.1 -1.9 Na+/H+ antiporter compare
Atu2057 -2.1 -2.0 DNA helicase II compare
Atu0399 -2.1 -5.1 dihydroorotase compare
Atu0331 -2.0 -3.0 sigma-54 modulation protein compare
Atu0141 -2.0 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu0189 -2.0 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu1810 -1.9 -1.0 hypothetical protein compare
Atu0999 -1.9 -2.2 magnesium transport protein compare
Atu1739 -1.9 -3.3 permease compare
Atu1030 -1.6 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0070 -1.6 -8.4 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu1028 -1.6 -2.3 hypothetical protein compare
Atu0071 -1.6 -7.6 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu6098 -1.5 -1.4 transcriptional regulator, HTH family compare
Atu3009 -1.5 -0.9 exopolysaccharide production protein compare
Atu0368 -1.5 -5.6 tRNA pseudouridine synthase I compare
Atu0641 -1.5 -3.9 hypothetical protein compare
Atu2640 -1.5 -3.3 hypothetical protein compare
Atu0298 -1.5 -4.8 orotidine 5 compare
Atu3299 -1.5 -1.7 hypothetical protein compare
Atu1803 -1.4 -4.4 cold shock protein compare
Atu4072 -1.4 -1.2 nodulation protein N compare
Atu0876 -1.4 -1.9 superoxide dismutase compare
Atu0486 -1.4 -3.8 dihydroorotate dehydrogenase compare
Atu0533 -1.3 -1.8 putative inhibitor of septum formation compare
Atu1774 -1.3 -1.3 ABC transporter, substrate binding protein (peptide) compare
Atu1513 -1.3 -3.5 ABC excinuclease subunit A compare
Atu1446 -1.3 -2.4 two component response regulator compare
Atu3517 -1.3 -4.3 acetyltransferase compare
Atu2464 -1.3 -2.8 formyltetrahydrofolate deformylase compare
Atu3727 -1.3 -4.7 hypothetical protein compare
Atu0086 -1.3 -1.3 ribosome-binding factor A compare
Atu0978 -1.3 -4.1 two component response regulator compare
Atu1359 -1.2 -1.3 dnaK deletion suppressor protein compare
Atu8191 -1.2 -1.4 hypothetical protein compare
Atu4205 -1.2 -5.0 TetR family transcriptional regulator compare
Atu1874 -1.2 -1.9 RecA protein compare
Atu0039 -1.2 -1.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu1039 -1.2 -3.9 DNA repair protein RecO compare
Atu0777 -1.2 -0.9 hypothetical protein compare
Atu2692 -1.1 -2.7 intracellular septation protein compare
Atu1503 -1.1 -1.3 hypothetical protein compare
Atu5164 -1.1 -1.2 type IV secretion protein AvhB3 compare
Atu0031 -1.1 -0.8 PTS system, IIA component compare
Atu0784 -1.1 -2.2 hypothetical protein compare
Atu4161 -1.1 -2.3 hypothetical protein compare
Atu1242 -1.1 -5.8 cytochrome oxidase assembly factor compare
Atu0044 -1.1 -5.2 heat shock protein hslV compare
Atu0251 -1.1 -7.4 hypothetical protein compare
Atu2376 -1.1 -2.8 hypothetical protein compare
Atu0101 -1.1 -2.3 cytochrome c compare
Atu0977 -1.1 -2.6 serine protease DO-like protease compare
Atu3006 -1.0 -3.4 hypothetical protein compare
Atu3598 -1.0 -0.9 thiol:disulfide interchange protein compare
Atu0601 -1.0 -4.7 oxidoreductase compare
Atu3249 -1.0 -4.6 septum formation inhibitor compare
Atu1129 -1.0 -4.3 excinuclease ABC chain C compare
Atu8096 -1.0 -1.6 hypothetical protein compare
Atu0190 -1.0 -0.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2684 -1.0 -2.1 hypothetical protein compare
Atu1077 -1.0 -2.5 DNA repair protein compare
Atu2083 -1.0 -1.9 DNA repair protein RecN compare
Atu1468 -1.0 -5.3 hypothetical protein compare
Atu8167 -1.0 -5.5 putative transmembrane protein compare
Atu1308 -1.0 -3.2 aspartate carbamoyl transferase catalytic subunit compare
Atu2831 -0.9 -2.4 glucose inhibited division protein A compare
Atu1327 -0.9 -2.1 NADH-ubiquinone oxidoreductase compare
Atu1904 -0.9 -2.1 transcriptional regulator compare
Atu0400 -0.9 -2.6 orotate phosphoribosyltransferase compare
Atu1099 -0.9 -3.3 hypothetical protein compare
Atu2832 -0.9 -2.1 tRNA modification GTPase compare
Atu0602 -0.9 -4.2 glutamine synthetase compare
Atu1475 -0.9 -2.3 hypothetical protein compare
Atu0544 -0.9 -1.9 hypothetical protein compare
Atu2184 -0.9 -2.6 transcriptional regulator, AsnC family compare
Atu0188 -0.9 -0.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0237 -0.9 -3.7 hypothetical protein compare
Atu0971 -0.9 -1.0 two component sensor kinase compare
Atu1683 -0.9 -1.3 hypothetical protein compare
Atu1754 -0.9 -1.7 hypothetical protein compare
Atu3744 -0.8 -5.1 ABC transporter permease compare
Atu0269 -0.8 -2.7 exodeoxyribonuclease VII large subunit compare
Atu1103 -0.8 -1.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1449 -0.8 -2.9 potassium uptake protein compare
Atu3739 -0.8 -2.5 phosphoglycerate kinase compare
Atu4616 -0.8 -0.8 dTDP-4-dehydrorhamnose reductase compare
Atu8177 -0.8 -2.5 hypothetical protein compare
Atu0923 -0.8 -2.6 hypothetical protein compare
Atu3663 -0.8 -1.6 hypothetical protein compare
Atu1838 -0.8 -1.8 ABC transporter, substrate binding protein (amino acid) compare
Atu4711 -0.8 -3.3 two component sensor kinase compare
Atu2634 -0.8 -1.8 hypothetical protein compare
Atu1307 -0.8 -3.6 dihydroorotase compare
Atu2052 -0.8 -2.0 hypothetical protein compare
Atu3011 -0.8 -2.6 ArsR family transcriptional regulator compare
Atu0142 -0.8 -1.2 cytochrome o ubiquinol oxidase subunit II compare
Atu0479 -0.8 -2.8 ABC transporter, substrate binding protein (amino acid) compare
Atu2633 -0.8 -1.2 RhtB family transporter compare
Atu0045 -0.8 -3.8 heat shock chaperone compare
Atu1525 -0.8 -2.5 hypothetical protein compare
Atu6189 -0.8 -1.2 protein secretion chaperone compare
Atu1163 -0.7 -0.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0029 -0.7 -2.3 S-adenosylhomocysteine hydrolase compare
Atu4407 -0.7 -1.8 periplasmic nitrate reductase, NapD protein compare
Atu2800 -0.7 -1.5 precorrin-3B C17-methyltransferase compare
Atu2616 -0.7 -1.6 hypothetical protein compare
Atu2746 -0.7 -1.8 hypothetical protein compare
Atu2554 -0.7 -1.6 lysyl-tRNA synthetase compare
Atu3014 -0.7 -1.1 hypothetical protein compare
Atu2484 -0.7 -1.2 hypothetical protein compare
Atu0690 -0.7 -1.2 hypothetical protein compare
Atu4897 -0.7 -1.1 hypothetical protein compare
Atu3604 -0.7 -1.8 hypoxanthine phosphoribosyltransferase compare
Atu2662 -0.7 -0.7 acetyltransferase compare
Atu4540 -0.7 -2.3 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2685 -0.7 -5.3 aconitate hydratase compare
Atu3460 -0.7 -2.9 RhtB family transporter compare
Atu2183 -0.7 -4.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0762 -0.7 -2.4 hypothetical protein compare
Atu4133 -0.7 -1.3 hypothetical protein compare
Atu3732 -0.7 -4.5 hemolysin compare
Atu3740 -0.7 -3.7 fructose bisphosphate aldolase compare
Atu0434 -0.7 -1.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1558 -0.7 -2.3 permease compare
Atu0354 -0.7 -1.0 ferric uptake regulator compare
Atu1364 -0.7 -2.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0138 -0.7 -3.7 surfeit 1 compare
Atu0580 -0.6 -1.1 flagellar biosynthetic protein compare
Atu3712 -0.6 -1.2 hypothetical protein compare
Atu3353 -0.6 -3.7 mannose-1-phosphate guanylyltransferase compare
Atu0925 -0.6 -1.7 hypothetical protein compare
Atu0047 -0.6 -4.2 malate synthase G compare
Atu4541 -0.6 -2.7 carboxymuconolactone decarboxylase compare
Atu3698 -0.6 -1.9 thioredoxin compare
Atu0953 -0.6 -0.6 hypothetical protein compare
Atu0972 -0.6 -1.5 lipA protein compare
Atu1258 -0.6 -1.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu1417 -0.6 -4.1 enoyl-CoA hydratase compare
Atu2728 -0.6 -0.9 beta (1-->2) glucan export ATP-binding protein compare
Atu4615 -0.6 -4.5 glucose-1-phosphate thymidylyltransferase compare
Atu1219 -0.6 -0.7 hypothetical protein compare
Atu8018 -0.6 -0.7 hypothetical protein compare
Atu1344 -0.6 -1.1 hypothetical protein compare
Atu2555 -0.6 -2.4 L-lysine 2,3-aminomutase compare
Atu2626 -0.6 -1.5 hypothetical protein compare
Atu2267 -0.6 -3.1 hypothetical protein compare
Atu4618 -0.6 -4.1 dTDP-rhamnose-3,5-epimerase compare
Atu3608 -0.6 -2.9 hypothetical protein compare
Atu3248 -0.6 -2.8 cell division inhibitor compare
Atu2515 -0.6 -2.4 ABC transporter, nucleotide binding/ATPase protein (dipeptide) compare
Atu0689 -0.6 -3.6 ribosomal large subunit pseudouridine synthase B compare
Atu0535 -0.6 -2.4 hypothetical protein compare
Atu1793 -0.6 -2.9 phosphatidylcholine synthase compare
Atu0894 -0.6 -1.0 ABC transporter, membrane spanning protein compare
Atu3985 -0.6 -3.0 pyrroline-5-carboxylate reductase compare
Atu0678 -0.6 -2.5 histidyl-tRNA synthetase compare
Atu2231 -0.6 -3.1 acetyltransferase compare
Atu3780 -0.6 -2.1 hypothetical protein compare
Atu3469 -0.6 -1.3 phosphoglyceromutase compare
Atu3291 -0.6 -2.1 Lpr family transcriptional regulator compare
Atu1467 -0.6 -1.1 hypothetical protein compare
Atu1836 -0.6 -1.1 hypothetical protein compare
Atu8143 -0.6 -1.8 hypothetical protein compare
Atu8025 -0.5 -0.7 hypothetical protein compare
Atu0926 -0.5 -2.2 hypothetical protein compare
Atu4342 -0.5 -1.7 hypothetical protein compare
Atu2204 -0.5 -1.0 hypothetical protein compare
Atu3336 -0.5 -1.2 hypothetical protein compare
Atu3429 -0.5 -0.8 hypothetical protein compare
Atu3115 -0.5 -1.6 TetR family transcriptional regulator compare
Atu3763 -0.5 -0.3 hypothetical protein compare
Atu1204 -0.5 -2.3 potassium uptake protein compare
Atu2650 -0.5 -3.0 glycerol-3-phosphate dehydrogenase compare
Atu8117 -0.5 -1.4 hypothetical protein compare
Atu4177 -0.5 -3.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2682 -0.5 -2.3 hypothetical protein compare
Atu4469 -0.5 -0.9 iron ABC transporter permease compare
Atu2796 -0.5 -2.3 precorrin-4 C11-methyltransferase compare
Atu2304 -0.5 -3.6 bacteroid development protein compare
Atu3628 -0.5 -1.8 hypothetical protein compare
Atu0572 -0.5 -0.7 hypothetical protein compare
Atu8138 -0.5 -0.8 hypothetical protein compare
Atu5493 -0.5 -2.8 hypothetical protein compare
Atu4217 -0.5 -0.3 TetR family transcriptional regulator compare
Atu2432 -0.5 -1.4 hypothetical protein compare
Atu2606 -0.5 -1.8 transcriptional regulator, GntR family compare
Atu4502 -0.5 -2.2 cobalamin synthesis protein compare
Atu4129 -0.5 -2.7 3-hydroxyisobutyrate dehydrogenase compare
Atu2237 -0.5 -2.5 cytochrome c1 compare
Atu6153 -0.5 -1.9 conserved hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For lb_sorghum f72 f505 LB_Sorghum F72 F505 in Agrobacterium fabrum C58

For lb_sorghum f72 f505 LB_Sorghum F72 F505 across organisms